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US20090264315A1 - Dipeptide mimics, libraries combining two dipeptide mimics with a third group, and methods for production thereof - Google Patents

Dipeptide mimics, libraries combining two dipeptide mimics with a third group, and methods for production thereof Download PDF

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US20090264315A1
US20090264315A1 US12/181,168 US18116808A US2009264315A1 US 20090264315 A1 US20090264315 A1 US 20090264315A1 US 18116808 A US18116808 A US 18116808A US 2009264315 A1 US2009264315 A1 US 2009264315A1
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Kevin Burgess
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STRIKE BIO Inc
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Texas A&M University System
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Assigned to NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT reassignment NATIONAL INSTITUTES OF HEALTH (NIH), U.S. DEPT. OF HEALTH AND HUMAN SERVICES (DHHS), U.S. GOVERNMENT CONFIRMATORY LICENSE (SEE DOCUMENT FOR DETAILS). Assignors: TEXAS A&M UNIVERSITY SYSTEM
Priority to US13/418,917 priority patent/US9562023B2/en
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D249/00Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms
    • C07D249/02Heterocyclic compounds containing five-membered rings having three nitrogen atoms as the only ring hetero atoms not condensed with other rings
    • C07D249/041,2,3-Triazoles; Hydrogenated 1,2,3-triazoles
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D241/00Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings
    • C07D241/02Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings
    • C07D241/06Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having one or two double bonds between ring members or between ring members and non-ring members
    • C07D241/08Heterocyclic compounds containing 1,4-diazine or hydrogenated 1,4-diazine rings not condensed with other rings having one or two double bonds between ring members or between ring members and non-ring members with oxygen atoms directly attached to ring carbon atoms
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D271/00Heterocyclic compounds containing five-membered rings having two nitrogen atoms and one oxygen atom as the only ring hetero atoms
    • C07D271/02Heterocyclic compounds containing five-membered rings having two nitrogen atoms and one oxygen atom as the only ring hetero atoms not condensed with other rings
    • C07D271/101,3,4-Oxadiazoles; Hydrogenated 1,3,4-oxadiazoles
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D273/00Heterocyclic compounds containing rings having nitrogen and oxygen atoms as the only ring hetero atoms, not provided for by groups C07D261/00 - C07D271/00
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/04Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings directly linked by a ring-member-to-ring-member bond
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings
    • C07D401/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D401/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
    • C07D401/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/02Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings
    • C07D403/12Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D403/00Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00
    • C07D403/14Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, not provided for by group C07D401/00 containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D405/00Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom
    • C07D405/14Heterocyclic compounds containing both one or more hetero rings having oxygen atoms as the only ring hetero atoms, and one or more rings having nitrogen as the only ring hetero atom containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/02Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings
    • C07D413/12Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures
    • C40B40/04Libraries containing only organic compounds
    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B50/00Methods of creating libraries, e.g. combinatorial synthesis
    • C40B50/08Liquid phase synthesis, i.e. wherein all library building blocks are in liquid phase or in solution during library creation; Particular methods of cleavage from the liquid support

Definitions

  • a point of interaction may be termed a ‘hot-spot.’
  • Molecules may be designed having pharmacophores positioned with known separation to interact with these hot-spots.
  • a molecule positioning two pharmacophores for interaction with hot spots may be termed a bivalent molecule.
  • Bivalent compounds may have increased binding energy over similar monovalent compounds, since more than one pharmacophore may interact with the protein.
  • Such compounds may be useful for studying protein-protein interactions, comprise a pharmaceutical lead compounds, or comprise pharmaceuticals.
  • amino acid side chain groups or side chains based on amino acid side chain groups contribute a majority of the binding energy, whereas main-chain carbonyl groups contribute relatively little toward the binding energy.
  • pharmacophores bearing amino acid side chain groups or groups based on amino acid side chain groups are likely to have enhanced binding properties over compounds not having amino acid side chains.
  • Drug leads utilizing unprotected amino acids as pharmacophores are undesirable from both a synthetic and pharmacological standpoint.
  • peptidomimetics have been developed as a means to improve pharmacological properties and lessen synthetic burden. A number of different peptidomimetics have been prepared.
  • the disclosure describes a compound whose structure is selected from the group consisting of:
  • R 1 and R 2 are comprised by at least one moiety comprising an amino acid side chain.
  • R 1 and R 2 further comprise non-peptidic bonds.
  • X1 comprises a core molecule selected from the group consisting of heteroarylenes, arylenes and heterocyclenes and a nucleophilic moiety bound to said core molecule.
  • K 1 and K 2 comprise at least one spacer atom between said core molecule and said at least one moiety comprising an amino acid side chain
  • the disclosure describes a compound having the structure
  • A1 comprises a macrocyclic ring comprising at least two amino acids, wherein said at least two amino acids are bound to each other in a ring comprising at least one peptide bond.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
  • S1 comprises a spacer group having at least one carbonyl moiety, wherein S1 does not comprise glycine.
  • the disclosure describes a compound having the structure
  • B1 is a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes.
  • P1 and P2 comprise an organic moiety comprising removal of a hydrogen atom from compounds disclosed herein.
  • P1 and P2 are independently selected.
  • the disclosure describes a compound having the structure
  • P3 and P4 comprise an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of compounds disclosed herein.
  • P3 and P4 are independently selected.
  • P5 comprises a moiety selected from the group consisting of an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of compounds disclosed herein and a labeling tag T1.
  • P5 is selected independently of P3 and P4.
  • the disclosure provides a method of producing a library of compounds, comprising the following steps:
  • T1 comprises a labeling tag
  • T1 comprises a labeling tag
  • first equivalent of a piperazine or piperidine compound disclosed herein or morpholine in the presence of a base and a solvent
  • second equivalent of a piperazine or piperidine compound disclosed herein or morpholine in the presence of a base and a sovlent. Selection of said first equivalent and said second equivalent is conducted with the proviso that said first equivalent and said second equivalent are not both morpholine.
  • the disclosure also provides pharmaceutical compounds, pharmaceutical lead compounds, and pharmacological probes selected from the compounds described herein.
  • the disclosure also provides compounds selected from the compounds described herein which demonstrate protein-protein interactions.
  • Alkyl refers to groups comprising straight, branched, and cyclic substituents containing about 1 to about 20 carbons, or about 1 to about 10 carbons in some embodiments. Alkyl groups may have carbon-carbon double bonds and contain about 2 to about 20 carbons, or about 2 to about 10 carbons in some embodiments. Alkyl groups may also have carbon-carbon triple bonds and contain about 2 to about 20 carbons, or about 2 to about 10 carbons in some embodiments. In an embodiment, an alkyl group is a methyl group.
  • alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, isobutyl, n-butyl, sec-butyl, tert-butyl, isopentyl, neopentyl, tert-pentyl, isohexyl, ethenyl, propenyl, butenyl, pentenyl, acetylenely, propynyl, butynyl, pentynyl, hexynyl, cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl.
  • Alkyl groups may be substituted with heteroatoms in the carbon chain comprising the alkyl group, wherein heteroatoms include, but are not limited to oxygen, nitrogen, and sulfur.
  • Alkyl groups may be substituted with one or more substituents, in certain embodiments one substituent, and in other embodiments three or four substituents.
  • amino acid side chain moieties includes groups of atoms linked to the ⁇ -carbon of naturally-occurring amino acids and their derivatives, homologues, and analogues.
  • Arylene is a monocyclic or polycyclic aromatic group having from about 5 to about 20 carbon atoms, at least one aromatic ring, and at least two substituents. In some embodiments, the arylene group has about 5 to about 12 carbon atoms. In an embodiment, the arylene is monocyclic and has 5 or 6 carbon atoms. Arylene groups may include, but are not limited to 1,2-, 1,3- and 1,4-disubstituted phenylene.
  • Heteroarylene is a monocyclic or polycyclic aromatic ring having about 5 to about 15 atoms in the ring, wherein about 1 to about 5 of the atoms in the ring are heteroatoms, and said ring has at least two substituents.
  • Heteroatom as defined herein, is an atom other than carbon, including but not limited to nitrogen, oxygen, and sulfur.
  • a heteroarylene is monocyclic and has 5 or 6 atoms, wherein 1 to 3 of the atoms are heteroatoms.
  • Heterocyclene is a monocyclic or polycyclic non-aromatic ring having about 5 to about 11 atoms in the ring, wherein about 1 to about 4 of the atoms in the ring are heteroatoms, and said ring has at least two substituents. Heteroatoms are atoms other than carbon that may include, but are not limited to, nitrogen, oxygen, and sulfur. In an embodiment, a heterocyclene is monocyclic and has 5 or 6 atoms, wherein 1 to 3 of the atoms are heteroatoms.
  • a heterocyclene is monocyclic and has 6 or 7 atoms, wherein 1 to 3 of the atoms are heteroatoms. In an embodiment, a heterocyclene is monocyclic, has 6 atoms, and 2 heteroatoms.
  • Microcyclic ring is a ring having more than about 12 atoms. In an embodiment, a macrocyclic ring has more than about 14 atoms. In an embodiment, a macrocyclic ring has 14 atoms. Macrocyclic rings may contain heteroatoms.
  • Non-peptidic bond is a chemical bond not comprising a peptide bond.
  • a non-peptidic bond may be an amide bond, provided the amide bond is not between two amino acids, wherein said amide bond between two amino acids is between the backbone amino and carboxylic acid groups of said amino acids.
  • a non-peptidic bond may be a bond between two amino acids, if said bond comprises any one other atom than the backbone amino and carboxylic acid groups.
  • “Peptide bond,” as defined herein, is an amide bond formed between the backbone amino and carboxylic acid groups of amino acids, peptides, proteins, and any of their derivatives or analogs.
  • compounds provided herein may contain chiral centers. Such chiral centers may be of either the (R) or (S) configuration, or a mixture thereof. Compounds containing more than one chiral center may be enantiomerically pure, or be a mixture of stereoisomeric and diastereomeric forms.
  • substantially pure as disclosed herein comprises a purity assay of >85% as determined by reversed-phase HPLC and identification of a molecular ion peak or fragment thereof by mass spectrometry (MS).
  • MS mass spectrometry
  • a substantially pure compound may be a mixture of stereoisomers, which may be further separable if desired.
  • R 1 and R 2 are comprised by at least one moiety comprising an amino acid side chain, and R 1 and R 2 further comprise non-peptidic bonds.
  • X1 comprises a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes.
  • a nucleophilic moiety also comprises X1 with the nucleophilic moiety bound to the core molecule in some manner.
  • X1 may be further comprised by at least one 1,2,3-triazine moiety bound to the core molecule. In an embodiment, two 1,2,3-triazine moieties are bound to the core molecule.
  • K 1 and K 2 comprise at least one spacer atom between the core molecule and the at least one moiety comprising an amino acid side chain.
  • Spacer atoms may comprise chains or rings of atoms and may contain single bonds, double bonds, triple bonds, and combinations thereof.
  • Compounds comprising this aspect of the disclosure may be considered diamino acid peptidomimetics, since the compounds mimic two amino acids present in protein structures.
  • Amino acid side chain moieties which comprise R 1 and R 2 , may include a structural fragment including, but not limited to:
  • Structural fragment refers to a grouping of atoms comprising the amino acid side chain moieties listed hereinabove.
  • R 1 and R 2 may be comprised solely by the amino acid side chain moieties comprising a structural fragment, or the structural fragment may be part of a larger grouping of atoms comprising R 1 and R 2 .
  • the point of attachment to the amino acid side chain moieties is indicated by the bond disconnection shown in the listing of moieties hereinabove.
  • R 1 and R 2 may be independently selected and comprise any of the amino acid side chain moieties listed hereinabove.
  • the nucleophilic moiety comprising X1 comprises a moiety selected from piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
  • the nucleophilic moiety is piperidine.
  • the nucleophilic moiety is piperazine.
  • the nucleophilic moiety may be bound directly to X1 in an embodiment.
  • the nucleophilic moiety may be bound to X1 through at least one spacer atom.
  • the at least one spacer atom may comprise R 1 or R 2 or comprise additional atoms bound to X1.
  • the nucleophilic moiety may provide a synthetic handle for further synthetic manipulation of the compounds.
  • the core molecule comprising X1 may be an aromatic ring in some embodiments, a heteroaromatic ring in other embodiments, or a heterocyclic ring in still other embodiments.
  • Aromatic rings may include, but are not limited to, a 1,2-substituted phenyl ring, a 1,3-substituted phenyl ring, and a 1,4-substituted phenyl ring.
  • An aromatic ring may be trisubstituted, such as a 1,2,4-substituted phenyl ring, a 1,2,5-substituted phenyl ring, a 1,2,3-substituted phenyl ring, and a 1,3,5-substituted phenyl ring.
  • An aromatic ring may be tetrasubstituted, such as a 1,2,3,4-substituted phenyl ring, a 1,2,3,5-substituted phenyl ring, and a 1,2,4,5-substituted phenyl ring.
  • An aromatic ring may be pentasubstituted, such as a 1,2,3,4,5-substituted phenyl ring.
  • An aromatic ring may be hexasubstituted, such as a 1,2,3,4,5,6-substituted phenyl ring.
  • a heteroaromatic ring may include, but is not limited to, a 1,2,3-triazole ring, a 1,3,4-oxadiazole ring, and a pyridine ring.
  • a heterocyclic ring may include, but is not limited to a diketopiperazine ring. In embodiments of the disclosure, derivatives and analogs of any of these rings are contemplated.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • Z1 is a moiety that may include, but is not limited to —CH 2 —, —CH 2 CH 2 — and —CH 2 CH 2 O—, and n1 is an integer from 1-20.
  • a compound having the structure having the structure
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • Z3 and Z4 comprise moieties independently selected from the group consisting of CO 2 R 3 , CONR 4 R 5 , and CH 2 OH, wherein R 3 is H or alkyl, R 4 is H or alkyl, and R 5 is H or alkyl.
  • R 4 and R 5 are selected independently from one another.
  • the compound has the structure
  • R 6 and R 7 are independently selected from the group consisting of hydrogen and alkyl. In certain embodiments of the disclosure, R 6 is methyl and R 7 is H. In other embodiments of the disclosure, R 6 is H and R 7 is methyl. In still other embodiments of the disclosure, both R 6 and R 7 are methyl.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • a compound having the structure having the structure
  • Z1 is a moiety that may include, but is not limited to, —CH 2 —, —CH 2 CH 2 — and —CH 2 CH 2 O—, and n1 is an integer from 1-20.
  • a compound having the structure having the structure
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • R 8 , and R 9 are independently selected from the group consisting of hydrogen and alkyl. In an embodiment, both R 8 and R 9 are hydrogen. In another embodiment, both R 8 and R 9 are methyl groups.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • R 10 and R 11 are independently selected from the group consisting of hydrogen and alkyl. In an embodiment, both R 10 and R 11 are hydrogen.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R 1 and R 2 are defined as detailed hereinabove.
  • the compounds may have the structure selected from the group, including but not limited to:
  • a general aspect of the disclosure describes compounds having the structure
  • A1 comprises a macrocyclic ring comprising at least two amino acids.
  • the at least two amino acids are bound to each other in a ring comprising at least one peptide bond.
  • Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
  • S1 comprises a spacer group having at least one carbonyl moiety, wherein S1 does not comprise glycine.
  • the compound has a structure selected from the group of compounds, including but not limited to:
  • Compounds produced hereinabove may be useful as monovalent diamino acid mimics.
  • the compounds may also be useful as pharmaceuticals or pharmaceutical leads. They demonstrate utility in that two of these monovalent amino acid mimics may be assembled into one molecule to give a bivalent amino acid mimic.
  • the monovalent compounds may be assembled into bivalent compounds using a their appended nucleophile in a non-limiting example.
  • the compounds disclosed hereinabove may be synthesized in a protected form.
  • Such a protected form may comprise protecting groups known to those skilled in the art.
  • amino groups may be protected with a tert-butoxycarbonyl group and carboxylic acids may be protected as t-butyl esters.
  • Other protecting groups may be more advantageous for use with certain moieties, and the utility of substituting different protecting groups for a given situation will be evident to those skilled in the art.
  • the compounds disclosed hereinabove may comprise a fragment of a larger molecule, wherein the fragment comprises removal of a hydrogen atom from the secondary nitrogen of the piperidine or piperazine ring of any of the compounds. Said fragment may be bonded to any other molecule conceivable to one skilled in the art.
  • the compounds disclosed hereinabove may comprise a bivalent amino acid mimic.
  • amino acid side chains may be incorporated into the compounds to mimic proteins that are involved in any protein-protein interaction of interest.
  • the amino acid side chains may be those derived from the group including, but not limited to, Trp, Arg, Tyr, Lys, Glu, Ser, Asn and Leu.
  • the amino acid side chains may be incorporated at a variety of separations and presentation angles by choice of the core molecule.
  • the organic framework is relatively rigid. These differences in distance and presentation angle may correspond to proximal amino acids in any secondary structural element, such as turns, helices, sheets, and loops, in a protein of interest.
  • syntheses of the compounds do not require amino acid protection.
  • the compounds contain a nucleophilic group, which allows the monovalent compounds to be assembled into bivalent compounds, again without the requirement for protecting groups. Said nucleophilic group may or may not influence the pharmacological or biological activity in the monovalent or bivalent compounds.
  • the compounds present the following advantages: 1) convenient preparation of a plurality of amino acid side chains and derivatives, 2) rigid frameworks to which the amino acid side-chains are bound, 3) variable separation and presentation angles of the amino acid side chains, allowing mimicking of various protein secondary structures, and 4) incorporation of a nucleophilic group which allows assembly of the monovalent compounds into divalent compounds.
  • Another aspect of the present disclosure is a compound having the structure
  • B1 is a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes.
  • P1 and P2 are independently selected and comprise an organic moiety comprising removal of a hydrogen atom from any of the compounds disclosed hereinabove.
  • the compound may be further comprised by a labeling tag T1 which is bound to B1.
  • T1 may be a group such as a fluorescein tag, a biotin tag, a polyether tag, or a 1,2,3-triazole-functionalized polyether tag, in non-limiting examples.
  • the compound may also be further comprised by a third organic moiety comprising removal of a hydrogen atom from the compounds disclosed hereinabove bound to B1, wherein said third organic moiety is selected independently of P1 and P2.
  • P3 and P4 comprise an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of the compounds disclosed hereinabove.
  • P3 and P4 are independently selected.
  • P5 comprises a moiety selected from the group consisting of an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of the compounds disclosed hereinabove and a labeling tag T1.
  • P5 is selected independently of P3 and P4.
  • the compound has the structure
  • P3, P4, and T1 are defined as described hereinabove.
  • at least one of P3 and P4 may further comprise a morpholinyl group (structure p below), with the proviso that both P3 and P4 are not a morpholinyl group.
  • T1 may be a group such as a fluorescein tag, a biotin tag, a polyether tag, or a 1,2,3-triazole-functionalized polyether tag, in non-limiting examples.
  • the labeling tag T1 may be selected from the group, including but not limited to the following structures:
  • fragment 1 may be useful for fluorescence detection assays.
  • Fragment 2 may be useful in strepavidin-based assays.
  • Fragment 3 may be useful for conveying improved water solubility.
  • Fragment 3 also bears functionality beneficial for synthesizing fragment 4, which has a 1,2,3-triazine moiety appended to its polyether chain.
  • Fragment 4 may be useful for impregnation of the compounds comprising fragment 4 into a liposome structure.
  • Compounds comprising P3, P4, and T1 may comprise a combinatorial library.
  • an exemplary member of the library of bivalent compounds may be made from a P3 fragment comprising removal of a hydrogen atom from the piperazine ring of b, a P4 fragment comprising removal of a hydrogen atom from the piperazine ring of d, and a labeling tag comprising 1.
  • Such a library member has the structure:
  • the fragments comprising P3 and P4 may be chosen from any compound disclosed hereinabove, with the proviso that both P3 and P4 are not morpholinyl. Further any valid combination of P3 and P4 may be combined with any combination of T1.
  • Members of the library may be expressed in the shorthand form P3P4T1, wherein P3, P4, and T1 describe the individual fragments bound to the central triazine core comprising the library.
  • P3 may be selected from the group including, but not limited to, a, A, b, B, C, C, d, D, e, E, f, F, g, G, h, H, i, I, j, J, k, K, l, L, m, M, n, N, o, O, p, q, Q, r, R, s, S, t, T, u, U, v, V, w, W, x, X, y, Y, z, Z, a′, A′, b′, B′, c′, C′, d′, D′, e′, E′, f′, F′, g′, G′, h′, H′, i′, I′, j′, J′, k′, K′, l′, L′, m′, M′, n′, N′, o′, O′, p′, P
  • P4 may be selected from the group including, but not limited to, a, A, b, B, c, C, d, D, e, E, f, F, g, G, h, H, i, I, j, J, k, K, l, L, m, M, n, N, o, O, p, q, Q, r, R, s, S, t, T, u, U, v, V, w, W, x, X, y, Y, z, Z, a′, A′, b′, B′, c′, C′, d′, D′, e′, E′, f′, F′, g′, G′, h′, H′, i′, I′, j′, J′, k′, K′, l′, L′, m′, M′, n′, N′, o′, O′, p′,
  • the present disclosure provides a method of producing a library
  • T1 comprises a labeling tag
  • T1 comprises a labeling tag
  • first equivalent any of the monovalent compounds described hereinabove or morpholine
  • second equivalent any of the monovalent compounds described hereinabove or morpholine
  • the base is potassium carbonate.
  • T1 is selected from the group including, but not limited to
  • the method used to prepare the library of bivalent compounds is advantageous in that it is an entirely solution phase method.
  • An additional advantage of the method is that the intermediate produced in step 2 may generally be used without further purification following removal of the solvent in step 3.
  • the library may be synthesized from monovalent fragments comprising the monovalent compounds hereinabove, wherein the amino acid side chain moieties of the monovalent compounds do not require protection. It is further notable that the nucleophilic group comprising the monovalent compounds was designed specifically to ensure chemoselective reaction over the protein amino acid side chains. Further, the method utilizes different solvents in steps 2 and 4 to ensure monoaddition to the triazine core during coupling of the first monovalent compound.
  • any of the monovalent and bivalent compounds described hereinabove and derivatives thereof may be pharmaceuticals. Any of the monovalent and bivalent compounds described hereinabove may pharmaceutical leads. A derivative or analog of a pharmaceutical lead may be a pharmaceutical.
  • compounds having a labeling tag may be useful for conducting pharmacological assays. In another embodiment, compounds having a labeling tag may be pharmacological probes. For example, a non-limiting use of the monovalent and divalent compounds may comprise demonstrating protein-protein interactions.
  • the compounds disclosed hereinabove have been designed to mimic certain proteins implicated in protein-protein interactions of particular interest. For instance, certain monovalent compounds have been designed with side-chains that correspond to amino acid residues at putative ‘hot-spots’ for the neurotrophins (NGF, BDNF, NT-3, NT-4) interacting with their receptors (TrkA, TrkB, TrkC, and p75), for the tumor necrosis factors (TNF ⁇ and TNF ⁇ ) interacting with their receptors (including p55 and p75), and for the so called “BH3-only proteins” (Bad, Bim, Bid, and Noxa) interacting with other Bcl2 proteins (eg Bcl2, Mcl1, BclW, BclB, Bax, Bak and Bok).
  • Bcl2 proteins eg Bcl2, Mcl1, BclW, BclB, Bax, Bak and Bok.
  • Monovalent compounds were synthesized with their amino groups protected as t-butoxycarbonyl derivatives.
  • carboxylic acid was protected as the t-butyl ester derivative.
  • Phenols were either protected as the t-butyl ester derivative or left unprotected. The protecting groups are removed only just prior to coupling with a with a triazine derivative to prepare a library compound.
  • Analyses, including 1 H and 13 C NMR, MS, and HPLC were conducted on the fully protected monovalent precursor compounds. The following experimental data was obtained:
  • the protected monovalent compounds may be reacted with a 1,3,5-triazine moiety having a labeling tag attached.
  • An exemplary but non-limiting general procedure for synthesizing the 1,3,5-triazine bivalent compounds follows: The protected monovalent compound was deprotected with TFA in CH 2 Cl 2 . The deprotected monovalent compound was dissolved in THF and reacted at room temperature with a dichlorotriazine derivative in the presence of K 2 CO 3 . In the example that follows, the dichlorotriazine derivative is labeled with a fluorescein tag (i.e., DTAF). The solvent was removed at reduced pressure, and the product was sufficiently pure to use without further purification.
  • DTAF fluorescein tag
  • Tables 1-7 provide listings of bivalent compounds prepared and experimental characterization of those compounds when available.

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Abstract

Monovalent compounds having moieties comprising at least one amino acid side chain are bound to a core molecule, which also comprises a nucleophilic moiety bound to said core molecule. Monovalent compounds also comprise a macrocyclic ring, a nucleophilic moiety, and a spacer group. Monovalent compounds may be combined into bivalent and trivalent compounds, some of which may have a labeling tag. Methods of production of bivalent compounds and contemplated uses thereof are disclosed.

Description

    CROSS-REFERENCE TO RELATED APPLICATIONS
  • This application claims priority to U.S. provisional patent application 60/952,149, filed Jul. 26, 2007, which is incorporated by reference as if written herein in its entirety.
  • STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH
  • This work was funded, in part, through support from the National Institutes of Health, Grant Nos. MH070040 and GM076261.
  • BACKGROUND
  • Many proteins interact via two or more contact points that account for the majority of the binding energy between the two. Such a point of interaction may be termed a ‘hot-spot.’ Molecules may be designed having pharmacophores positioned with known separation to interact with these hot-spots. A molecule positioning two pharmacophores for interaction with hot spots may be termed a bivalent molecule. Bivalent compounds may have increased binding energy over similar monovalent compounds, since more than one pharmacophore may interact with the protein. Such compounds may be useful for studying protein-protein interactions, comprise a pharmaceutical lead compounds, or comprise pharmaceuticals.
  • For protein-protein interactions, studies have shown that amino acid side chain groups or side chains based on amino acid side chain groups contribute a majority of the binding energy, whereas main-chain carbonyl groups contribute relatively little toward the binding energy. Thus, pharmacophores bearing amino acid side chain groups or groups based on amino acid side chain groups are likely to have enhanced binding properties over compounds not having amino acid side chains. Drug leads utilizing unprotected amino acids as pharmacophores are undesirable from both a synthetic and pharmacological standpoint. In response to this need, peptidomimetics have been developed as a means to improve pharmacological properties and lessen synthetic burden. A number of different peptidomimetics have been prepared.
  • The ability to rapidly prepare libraries of compounds is advantageous for screening of new pharmacophores. Preparation of compound libraries is often achieved by combinatorial methods utilizing solid-phase syntheses. Solution-phase syntheses offer considerable handling advantages over solid-phase methods, but they are usually much slower than solid phase methods for production of compound libraries.
  • In view of the foregoing, it would be highly beneficial to design peptidomimetics having amino acid side chains or groups based on amino acid side chains, whose structures are amenable to rapid bivalent compound library syntheses by solution phase synthesis methods.
  • SUMMARY
  • In some aspects, the disclosure describes a compound whose structure is selected from the group consisting of:
  • Figure US20090264315A1-20091022-C00001
  • R1 and R2 are comprised by at least one moiety comprising an amino acid side chain. R1 and R2 further comprise non-peptidic bonds. X1 comprises a core molecule selected from the group consisting of heteroarylenes, arylenes and heterocyclenes and a nucleophilic moiety bound to said core molecule. K1 and K2 comprise at least one spacer atom between said core molecule and said at least one moiety comprising an amino acid side chain
  • In other aspects, the disclosure describes a compound having the structure
  • Figure US20090264315A1-20091022-C00002
  • A1 comprises a macrocyclic ring comprising at least two amino acids, wherein said at least two amino acids are bound to each other in a ring comprising at least one peptide bond. Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof. S1 comprises a spacer group having at least one carbonyl moiety, wherein S1 does not comprise glycine.
  • In another aspect, the disclosure describes a compound having the structure
  • Figure US20090264315A1-20091022-C00003
  • B1 is a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes. P1 and P2 comprise an organic moiety comprising removal of a hydrogen atom from compounds disclosed herein. P1 and P2 are independently selected.
  • In still another aspect, the disclosure describes a compound having the structure
  • Figure US20090264315A1-20091022-C00004
  • P3 and P4 comprise an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of compounds disclosed herein. P3 and P4 are independently selected. P5 comprises a moiety selected from the group consisting of an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of compounds disclosed herein and a labeling tag T1. P5 is selected independently of P3 and P4.
  • In still another aspect, the disclosure provides a method of producing a library of compounds, comprising the following steps:
  • Figure US20090264315A1-20091022-C00005
  • 1) providing wherein T1 comprises a labeling tag;
    2) reacting a first equivalent of a piperazine or piperidine compound disclosed herein or morpholine in the presence of a base and a solvent; 3) removing the solvent; and 4) reacting a second equivalent of a piperazine or piperidine compound disclosed herein or morpholine in the presence of a base and a sovlent. Selection of said first equivalent and said second equivalent is conducted with the proviso that said first equivalent and said second equivalent are not both morpholine.
  • The disclosure also provides pharmaceutical compounds, pharmaceutical lead compounds, and pharmacological probes selected from the compounds described herein. The disclosure also provides compounds selected from the compounds described herein which demonstrate protein-protein interactions.
  • The foregoing has outlined rather broadly the features of the present disclosure in order that the detailed description that follows may be better understood. Additional features and advantages of the disclosure will be described hereinafter, which form the subject of the claims.
  • DETAILED DESCRIPTION
  • In the following description, certain details are set forth such as specific quantities, sizes, etc. so as to provide a thorough understanding of the present embodiments disclosed herein. However, it will be obvious to those skilled in the art that the present disclosure may be practiced without such specific details. In many cases, details concerning such considerations and the like have been omitted inasmuch as such details are not necessary to obtain a complete understanding of the present disclosure and are within the skills of persons of ordinary skill in the relevant art.
  • While most of the terms used herein will be recognizable to those of skill in the art, the following definitions are nevertheless put forth to aid in the understanding of the present disclosure. It should be understood, however, that when not explicitly defined, terms should be interpreted as adopting a meaning presently accepted by those of skill in the art.
  • “Alkyl,” as defined herein refers to groups comprising straight, branched, and cyclic substituents containing about 1 to about 20 carbons, or about 1 to about 10 carbons in some embodiments. Alkyl groups may have carbon-carbon double bonds and contain about 2 to about 20 carbons, or about 2 to about 10 carbons in some embodiments. Alkyl groups may also have carbon-carbon triple bonds and contain about 2 to about 20 carbons, or about 2 to about 10 carbons in some embodiments. In an embodiment, an alkyl group is a methyl group. Representative alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, isobutyl, n-butyl, sec-butyl, tert-butyl, isopentyl, neopentyl, tert-pentyl, isohexyl, ethenyl, propenyl, butenyl, pentenyl, acetylenely, propynyl, butynyl, pentynyl, hexynyl, cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl. Alkyl groups may be substituted with heteroatoms in the carbon chain comprising the alkyl group, wherein heteroatoms include, but are not limited to oxygen, nitrogen, and sulfur. Alkyl groups may be substituted with one or more substituents, in certain embodiments one substituent, and in other embodiments three or four substituents.
  • “Amino acid side chain moieties,” as defined herein includes groups of atoms linked to the α-carbon of naturally-occurring amino acids and their derivatives, homologues, and analogues.
  • “Arylene,” as defined herein, is a monocyclic or polycyclic aromatic group having from about 5 to about 20 carbon atoms, at least one aromatic ring, and at least two substituents. In some embodiments, the arylene group has about 5 to about 12 carbon atoms. In an embodiment, the arylene is monocyclic and has 5 or 6 carbon atoms. Arylene groups may include, but are not limited to 1,2-, 1,3- and 1,4-disubstituted phenylene.
  • “Heteroarylene,” as defined herein, is a monocyclic or polycyclic aromatic ring having about 5 to about 15 atoms in the ring, wherein about 1 to about 5 of the atoms in the ring are heteroatoms, and said ring has at least two substituents. “Heteroatom,” as defined herein, is an atom other than carbon, including but not limited to nitrogen, oxygen, and sulfur. In an embodiment, a heteroarylene is monocyclic and has 5 or 6 atoms, wherein 1 to 3 of the atoms are heteroatoms.
  • “Heterocyclene,” as defined herein, is a monocyclic or polycyclic non-aromatic ring having about 5 to about 11 atoms in the ring, wherein about 1 to about 4 of the atoms in the ring are heteroatoms, and said ring has at least two substituents. Heteroatoms are atoms other than carbon that may include, but are not limited to, nitrogen, oxygen, and sulfur. In an embodiment, a heterocyclene is monocyclic and has 5 or 6 atoms, wherein 1 to 3 of the atoms are heteroatoms.
  • In another embodiment, a heterocyclene is monocyclic and has 6 or 7 atoms, wherein 1 to 3 of the atoms are heteroatoms. In an embodiment, a heterocyclene is monocyclic, has 6 atoms, and 2 heteroatoms.
  • “Macrocyclic ring,” as defined herein, is a ring having more than about 12 atoms. In an embodiment, a macrocyclic ring has more than about 14 atoms. In an embodiment, a macrocyclic ring has 14 atoms. Macrocyclic rings may contain heteroatoms.
  • “Non-peptidic bond,” as defined herein, is a chemical bond not comprising a peptide bond. A non-peptidic bond may be an amide bond, provided the amide bond is not between two amino acids, wherein said amide bond between two amino acids is between the backbone amino and carboxylic acid groups of said amino acids. A non-peptidic bond may be a bond between two amino acids, if said bond comprises any one other atom than the backbone amino and carboxylic acid groups.
  • “Peptide bond,” as defined herein, is an amide bond formed between the backbone amino and carboxylic acid groups of amino acids, peptides, proteins, and any of their derivatives or analogs.
  • It is to be understood that compounds provided herein may contain chiral centers. Such chiral centers may be of either the (R) or (S) configuration, or a mixture thereof. Compounds containing more than one chiral center may be enantiomerically pure, or be a mixture of stereoisomeric and diastereomeric forms.
  • Compounds disclosed herein are substantially pure. “Substantially pure,” as disclosed herein comprises a purity assay of >85% as determined by reversed-phase HPLC and identification of a molecular ion peak or fragment thereof by mass spectrometry (MS). A substantially pure compound may be a mixture of stereoisomers, which may be further separable if desired.
  • In a general aspect of the disclosure, a compound having the structure selected from the group consisting of:
  • Figure US20090264315A1-20091022-C00006
  • is described. R1 and R2 are comprised by at least one moiety comprising an amino acid side chain, and R1 and R2 further comprise non-peptidic bonds. X1 comprises a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes. A nucleophilic moiety also comprises X1 with the nucleophilic moiety bound to the core molecule in some manner. X1 may be further comprised by at least one 1,2,3-triazine moiety bound to the core molecule. In an embodiment, two 1,2,3-triazine moieties are bound to the core molecule. K1 and K2 comprise at least one spacer atom between the core molecule and the at least one moiety comprising an amino acid side chain. Spacer atoms may comprise chains or rings of atoms and may contain single bonds, double bonds, triple bonds, and combinations thereof. Compounds comprising this aspect of the disclosure may be considered diamino acid peptidomimetics, since the compounds mimic two amino acids present in protein structures.
  • Amino acid side chain moieties, which comprise R1 and R2, may include a structural fragment including, but not limited to:
  • Figure US20090264315A1-20091022-C00007
  • Structural fragment, as used hereinabove, refers to a grouping of atoms comprising the amino acid side chain moieties listed hereinabove. R1 and R2 may be comprised solely by the amino acid side chain moieties comprising a structural fragment, or the structural fragment may be part of a larger grouping of atoms comprising R1 and R2. The point of attachment to the amino acid side chain moieties is indicated by the bond disconnection shown in the listing of moieties hereinabove. R1 and R2 may be independently selected and comprise any of the amino acid side chain moieties listed hereinabove.
  • The nucleophilic moiety comprising X1 comprises a moiety selected from piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof. In an embodiment of the disclosure, the nucleophilic moiety is piperidine. In another embodiment of the disclosure, the nucleophilic moiety is piperazine. The nucleophilic moiety may be bound directly to X1 in an embodiment. In another embodiment, the nucleophilic moiety may be bound to X1 through at least one spacer atom. The at least one spacer atom may comprise R1 or R2 or comprise additional atoms bound to X1. The nucleophilic moiety may provide a synthetic handle for further synthetic manipulation of the compounds.
  • The core molecule comprising X1 may be an aromatic ring in some embodiments, a heteroaromatic ring in other embodiments, or a heterocyclic ring in still other embodiments. Aromatic rings may include, but are not limited to, a 1,2-substituted phenyl ring, a 1,3-substituted phenyl ring, and a 1,4-substituted phenyl ring. An aromatic ring may be trisubstituted, such as a 1,2,4-substituted phenyl ring, a 1,2,5-substituted phenyl ring, a 1,2,3-substituted phenyl ring, and a 1,3,5-substituted phenyl ring. An aromatic ring may be tetrasubstituted, such as a 1,2,3,4-substituted phenyl ring, a 1,2,3,5-substituted phenyl ring, and a 1,2,4,5-substituted phenyl ring. An aromatic ring may be pentasubstituted, such as a 1,2,3,4,5-substituted phenyl ring. An aromatic ring may be hexasubstituted, such as a 1,2,3,4,5,6-substituted phenyl ring. A heteroaromatic ring may include, but is not limited to, a 1,2,3-triazole ring, a 1,3,4-oxadiazole ring, and a pyridine ring. A heterocyclic ring may include, but is not limited to a diketopiperazine ring. In embodiments of the disclosure, derivatives and analogs of any of these rings are contemplated.
  • In one aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00008
  • is described, wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove.
  • In one aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00009
  • is described, wherein Z1, R1 and R2 are defined as detailed hereinabove. Z2 is a moiety that may include, but is not limited to —CH2—, —CH2CH2— and —CH2CH2O—, and n1 is an integer from 1-20. In an embodiment of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00010
  • is described, wherein Z1, R1 and R2 are defined as detailed hereinabove.
  • In another aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00011
  • is described wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove. Z3 and Z4 comprise moieties independently selected from the group consisting of CO2R3, CONR4R5, and CH2OH, wherein R3 is H or alkyl, R4 is H or alkyl, and R5 is H or alkyl. R4 and R5 are selected independently from one another. In an embodiment, the compound has the structure
  • Figure US20090264315A1-20091022-C00012
  • wherein Z1, R1, and R2 are defined as detailed hereinabove. R6 and R7 are independently selected from the group consisting of hydrogen and alkyl. In certain embodiments of the disclosure, R6 is methyl and R7 is H. In other embodiments of the disclosure, R6 is H and R7 is methyl. In still other embodiments of the disclosure, both R6 and R7 are methyl.
  • In another aspect of the disclosure, a compound having a structure
  • Figure US20090264315A1-20091022-C00013
  • is described, wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove. In an embodiment, a compound having the structure
  • Figure US20090264315A1-20091022-C00014
  • is described, wherein Z1, R1 and R2 are defined as detailed hereinabove. Z2 is a moiety that may include, but is not limited to, —CH2—, —CH2CH2— and —CH2CH2O—, and n1 is an integer from 1-20. In an embodiment of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00015
  • is described, wherein Z1, R1 and R2 are defined as detailed hereinabove
  • In another aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00016
  • is described, wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove. R8, and R9 are independently selected from the group consisting of hydrogen and alkyl. In an embodiment, both R8 and R9 are hydrogen. In another embodiment, both R8 and R9 are methyl groups.
  • In another aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00017
  • is described, wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove. R10 and R11 are independently selected from the group consisting of hydrogen and alkyl. In an embodiment, both R10 and R11 are hydrogen.
  • In another aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00018
  • is described, wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove.
  • In still another aspect of the disclosure a compound having the structure
  • Figure US20090264315A1-20091022-C00019
  • is described, wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and wherein R1 and R2 are defined as detailed hereinabove.
  • In the embodiments described hereinabove, the compounds may have the structure selected from the group, including but not limited to:
  • Figure US20090264315A1-20091022-C00020
    Figure US20090264315A1-20091022-C00021
    Figure US20090264315A1-20091022-C00022
    Figure US20090264315A1-20091022-C00023
    Figure US20090264315A1-20091022-C00024
    Figure US20090264315A1-20091022-C00025
    Figure US20090264315A1-20091022-C00026
    Figure US20090264315A1-20091022-C00027
    Figure US20090264315A1-20091022-C00028
    Figure US20090264315A1-20091022-C00029
    Figure US20090264315A1-20091022-C00030
    Figure US20090264315A1-20091022-C00031
    Figure US20090264315A1-20091022-C00032
    Figure US20090264315A1-20091022-C00033
    Figure US20090264315A1-20091022-C00034
    Figure US20090264315A1-20091022-C00035
    Figure US20090264315A1-20091022-C00036
    Figure US20090264315A1-20091022-C00037
    Figure US20090264315A1-20091022-C00038
    Figure US20090264315A1-20091022-C00039
    Figure US20090264315A1-20091022-C00040
    Figure US20090264315A1-20091022-C00041
  • A general aspect of the disclosure describes compounds having the structure
  • Figure US20090264315A1-20091022-C00042
  • wherein A1 comprises a macrocyclic ring comprising at least two amino acids. The at least two amino acids are bound to each other in a ring comprising at least one peptide bond. Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof. S1 comprises a spacer group having at least one carbonyl moiety, wherein S1 does not comprise glycine. In certain embodiments, the compound has a structure selected from the group of compounds, including but not limited to:
  • Figure US20090264315A1-20091022-C00043
  • Compounds produced hereinabove may be useful as monovalent diamino acid mimics. The compounds may also be useful as pharmaceuticals or pharmaceutical leads. They demonstrate utility in that two of these monovalent amino acid mimics may be assembled into one molecule to give a bivalent amino acid mimic. The monovalent compounds may be assembled into bivalent compounds using a their appended nucleophile in a non-limiting example. In practicing the disclosure to form monovalent and bivalent amino acid mimics, the compounds disclosed hereinabove may be synthesized in a protected form. Such a protected form may comprise protecting groups known to those skilled in the art. In non-limiting examples, amino groups may be protected with a tert-butoxycarbonyl group and carboxylic acids may be protected as t-butyl esters. Other protecting groups may be more advantageous for use with certain moieties, and the utility of substituting different protecting groups for a given situation will be evident to those skilled in the art.
  • The compounds disclosed hereinabove may comprise a fragment of a larger molecule, wherein the fragment comprises removal of a hydrogen atom from the secondary nitrogen of the piperidine or piperazine ring of any of the compounds. Said fragment may be bonded to any other molecule conceivable to one skilled in the art. In an embodiment, the compounds disclosed hereinabove may comprise a bivalent amino acid mimic.
  • An advantage of the compounds disclosed hereinabove as monovalent amino acid mimics is that the syntheses of most of the compounds may be conducted directly from amino acid starting materials. This feature allows a wide range of amino acid side chains to be incorporated into the monovalent compounds. Through methods known to those skilled in the art, side chains that are analogs, derivatives, or homologues of naturally-occurring amino acid side chains may be incorporated into the molecules as well. In another aspect, amino acid side chains may be incorporated into the compounds to mimic proteins that are involved in any protein-protein interaction of interest. In a non-limiting example, the amino acid side chains may be those derived from the group including, but not limited to, Trp, Arg, Tyr, Lys, Glu, Ser, Asn and Leu. Another advantage of the monovalent amino acid mimics is that the amino acid side chains may be incorporated at a variety of separations and presentation angles by choice of the core molecule. Further, the organic framework is relatively rigid. These differences in distance and presentation angle may correspond to proximal amino acids in any secondary structural element, such as turns, helices, sheets, and loops, in a protein of interest. In yet another advantage, syntheses of the compounds do not require amino acid protection. Yet another advantage of the compounds, is that they contain a nucleophilic group, which allows the monovalent compounds to be assembled into bivalent compounds, again without the requirement for protecting groups. Said nucleophilic group may or may not influence the pharmacological or biological activity in the monovalent or bivalent compounds. In summary, the compounds present the following advantages: 1) convenient preparation of a plurality of amino acid side chains and derivatives, 2) rigid frameworks to which the amino acid side-chains are bound, 3) variable separation and presentation angles of the amino acid side chains, allowing mimicking of various protein secondary structures, and 4) incorporation of a nucleophilic group which allows assembly of the monovalent compounds into divalent compounds.
  • Another aspect of the present disclosure is a compound having the structure
  • Figure US20090264315A1-20091022-C00044
  • wherein B1 is a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes. P1 and P2 are independently selected and comprise an organic moiety comprising removal of a hydrogen atom from any of the compounds disclosed hereinabove. The compound may be further comprised by a labeling tag T1 which is bound to B1. In embodiments of the disclosure, T1 may be a group such as a fluorescein tag, a biotin tag, a polyether tag, or a 1,2,3-triazole-functionalized polyether tag, in non-limiting examples. The compound may also be further comprised by a third organic moiety comprising removal of a hydrogen atom from the compounds disclosed hereinabove bound to B1, wherein said third organic moiety is selected independently of P1 and P2.
  • In another general aspect of the disclosure, a compound having the structure
  • Figure US20090264315A1-20091022-C00045
  • is described, wherein P3 and P4 comprise an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of the compounds disclosed hereinabove. P3 and P4 are independently selected. P5 comprises a moiety selected from the group consisting of an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of the compounds disclosed hereinabove and a labeling tag T1. P5 is selected independently of P3 and P4. In an embodiment, the compound has the structure
  • Figure US20090264315A1-20091022-C00046
  • wherein P3, P4, and T1 are defined as described hereinabove. In a further embodiment, at least one of P3 and P4 may further comprise a morpholinyl group (structure p below), with the proviso that both P3 and P4 are not a morpholinyl group.
  • Figure US20090264315A1-20091022-C00047
  • In embodiments wherein there is a labeling tag T1, T1 may be a group such as a fluorescein tag, a biotin tag, a polyether tag, or a 1,2,3-triazole-functionalized polyether tag, in non-limiting examples. In certain embodiments, the labeling tag T1 may be selected from the group, including but not limited to the following structures:
  • Figure US20090264315A1-20091022-C00048
  • These labeling tags are representative of the groups that may be useful for tagging the library and should not be considered limiting of the disclosure. For example, fragment 1, may be useful for fluorescence detection assays. Fragment 2 may be useful in strepavidin-based assays. Fragment 3 may be useful for conveying improved water solubility. Fragment 3 also bears functionality beneficial for synthesizing fragment 4, which has a 1,2,3-triazine moiety appended to its polyether chain. Fragment 4 may be useful for impregnation of the compounds comprising fragment 4 into a liposome structure.
  • Compounds comprising P3, P4, and T1 may comprise a combinatorial library. By way of non-limiting example, an exemplary member of the library of bivalent compounds may be made from a P3 fragment comprising removal of a hydrogen atom from the piperazine ring of b, a P4 fragment comprising removal of a hydrogen atom from the piperazine ring of d, and a labeling tag comprising 1. Such a library member has the structure:
  • Figure US20090264315A1-20091022-C00049
  • The fragments comprising P3 and P4 may be chosen from any compound disclosed hereinabove, with the proviso that both P3 and P4 are not morpholinyl. Further any valid combination of P3 and P4 may be combined with any combination of T1. Members of the library may be expressed in the shorthand form P3P4T1, wherein P3, P4, and T1 describe the individual fragments bound to the central triazine core comprising the library. P3 may be selected from the group including, but not limited to, a, A, b, B, C, C, d, D, e, E, f, F, g, G, h, H, i, I, j, J, k, K, l, L, m, M, n, N, o, O, p, q, Q, r, R, s, S, t, T, u, U, v, V, w, W, x, X, y, Y, z, Z, a′, A′, b′, B′, c′, C′, d′, D′, e′, E′, f′, F′, g′, G′, h′, H′, i′, I′, j′, J′, k′, K′, l′, L′, m′, M′, n′, N′, o′, O′, p′, P′, q′, Q′, r′, R′, s′, S′, t′, T′, u′, U′, v′, V′, w′, W′, x′, X′, y′, Y′, z′, Z′, a″, A″, b″, B″, c″, C″, d″, D″, e″, E″, f″, F″, g″, G″, h″, H″, i″, I″, j′, J″, k″, K″, l″, L″, m″, M″, n″, N″, o″, O″, p″, P″, q″, Q″, r″, R″, s″, S″, t″, T″, u″, U″, v″, V″, w″, W″, x″, X″, y″, Y″, z″, Z″, a′″, A′″, b′″, B′″, c′″, C′″, d′″, D′″, e′″, E′″, f′″, F′″, g′″, G′″, h′″, H′″, i′″, I′″, j′″, J′″, k′″, K′″, l′″, L′″, m′″, M′″, n′″, N′″, o′″, O′″, p′″, P′″, q′″, Q′″, r′″, R′″, s′″, S′″, t′″, T′″, u′″, U′″, v′″, V′″, w′″, W′″, x′″, X′″, y′″, Y′″, z′″, Z′″, a″″, A″″, b″″, B″″, c″″, C″″, d″″, D″″, e″″, and E″″. P4 may be selected from the group including, but not limited to, a, A, b, B, c, C, d, D, e, E, f, F, g, G, h, H, i, I, j, J, k, K, l, L, m, M, n, N, o, O, p, q, Q, r, R, s, S, t, T, u, U, v, V, w, W, x, X, y, Y, z, Z, a′, A′, b′, B′, c′, C′, d′, D′, e′, E′, f′, F′, g′, G′, h′, H′, i′, I′, j′, J′, k′, K′, l′, L′, m′, M′, n′, N′, o′, O′, p′, P′, q′, Q′, r′, R′, s′, S′, t′, T′, u′, U′, v′, V′, w′, W′, x′, X′, y′, Y′, z′, Z′, a″, A″, b″, B″, c″, C″, d″, D″, e″, E″, f″, F″, g″, G″, h″, H″, i″, I″, j″, J″, k″, K″, l″, L″, m″, M″, n″, N″, o″, O″, p″, P″, q″, Q″, r″, R″, s″, S″, t″, T″, u″, U″, v″, V″, w″, W″, x″, X″, y″, Y″, z″, Z″, a′″, A′″, b′″, B′″, c′″, C′″, d′″, D′″, e′″, E′″, f′″, F′″, g′″, G′″, h′″, H′″, i′″, I′″, j′″, J′″, k′″, K′″, l′″, L′″, m′″, M′″, n′″, N′″, o′″, O′″, p′″, P′″, q′″, Q′″, r′″, R′″, s′″, S′″, t′″, T′″, u′″, U′″, v′″, V′″, w′″, W′″, x′″, X′″, y′″, Y′″, z′″, Z′″, a″″, A″″, b″″, B″″, c″″, C″″, d″″, D″″, e″″, and E″″. T1 may be selected from the group including, but not limited to, 1, 2, 3, and 4. All allowable combinations may comprise the library. For the non-limiting example presented hereinabove, the shorthand notation describing the library compound is bd1.
  • In another general aspect, the present disclosure provides a method of producing a library
  • Figure US20090264315A1-20091022-C00050
  • of compounds comprising: 1) providing wherein T1 comprises a labeling tag; 2) reacting a first equivalent of any of the monovalent compounds described hereinabove or morpholine with the compound of step 1 in the presence of a base and a solvent; 3) removing the solvent; and 4) reacting a second equivalent of any of the monovalent compounds described hereinabove or morpholine with the compound produced in step 2 of the method. Selection of said first equivalent and said second equivalent is conducted with the proviso that said first equivalent and said second equivalent are not both morpholine. In certain embodiments of the method, the base is potassium carbonate. In certain embodiments of the method, T1 is selected from the group including, but not limited to
  • Figure US20090264315A1-20091022-C00051
  • The method used to prepare the library of bivalent compounds is advantageous in that it is an entirely solution phase method. An additional advantage of the method is that the intermediate produced in step 2 may generally be used without further purification following removal of the solvent in step 3. Finally, the library may be synthesized from monovalent fragments comprising the monovalent compounds hereinabove, wherein the amino acid side chain moieties of the monovalent compounds do not require protection. It is further notable that the nucleophilic group comprising the monovalent compounds was designed specifically to ensure chemoselective reaction over the protein amino acid side chains. Further, the method utilizes different solvents in steps 2 and 4 to ensure monoaddition to the triazine core during coupling of the first monovalent compound.
  • Any of the monovalent and bivalent compounds described hereinabove and derivatives thereof may be pharmaceuticals. Any of the monovalent and bivalent compounds described hereinabove may pharmaceutical leads. A derivative or analog of a pharmaceutical lead may be a pharmaceutical. In another embodiment of the disclosure, compounds having a labeling tag may be useful for conducting pharmacological assays. In another embodiment, compounds having a labeling tag may be pharmacological probes. For example, a non-limiting use of the monovalent and divalent compounds may comprise demonstrating protein-protein interactions.
  • The compounds disclosed hereinabove have been designed to mimic certain proteins implicated in protein-protein interactions of particular interest. For instance, certain monovalent compounds have been designed with side-chains that correspond to amino acid residues at putative ‘hot-spots’ for the neurotrophins (NGF, BDNF, NT-3, NT-4) interacting with their receptors (TrkA, TrkB, TrkC, and p75), for the tumor necrosis factors (TNFα and TNFβ) interacting with their receptors (including p55 and p75), and for the so called “BH3-only proteins” (Bad, Bim, Bid, and Noxa) interacting with other Bcl2 proteins (eg Bcl2, Mcl1, BclW, BclB, Bax, Bak and Bok). These protein targets are merely exemplary and are not meant to be limiting of the protein targets thay may interact with the compounds described in the disclosure.
  • EXAMPLES
  • The following experimental examples are included to demonstrate particular aspects of the present disclosure. It should be appreciated by those of skill in the art that the methods described in the examples that follow merely represent exemplary embodiments of the disclosure. Those of skill in the art should, in light of the present disclosure, appreciate that many changes can be made in the specific embodiments described and still obtain a like or similar result without departing from the spirit and scope of the present disclosure.
  • Example 1 Synthesis and Characterization of Protected Monovalent Compounds
  • Monovalent compounds were synthesized with their amino groups protected as t-butoxycarbonyl derivatives. For compounds having carboxylic acid groups, the carboxylic acid was protected as the t-butyl ester derivative. Phenols were either protected as the t-butyl ester derivative or left unprotected. The protecting groups are removed only just prior to coupling with a with a triazine derivative to prepare a library compound. Analyses, including 1H and 13C NMR, MS, and HPLC were conducted on the fully protected monovalent precursor compounds. The following experimental data was obtained:
  • The following general method may be used to prepare protected monovalent compounds a through o (Scheme 1). Synthesis of protected monovalent compound 1 is demonstrated in Scheme 2 as a representative example.
  • Figure US20090264315A1-20091022-C00052
  • Figure US20090264315A1-20091022-C00053
  • Characterization data for protected monovalent compounds a through o follows:
  • Figure US20090264315A1-20091022-C00054
  • 1H NMR (300 MHz, CDCl3) δ 5.42 (d, 1H, J=10.5 Hz), 5.28 (s, 1H), 4.56 (s, 2H), 3.67-3.29 (m, 12H), 2.36 (m, 1H), 1.04 (s, 18H), 1.02-0.78 (m, 8H); 13C NMR (75 MHz, CDCl3) δ 166.9, 156.2, 154.6, 145.5, 121.7, 80.8, 79.5, 64.7, 46.3, 44.0 (b), 42.5, 40.5, 38.2, 28.7, 28.5, 28.4, 26.3, 25.0, 24.7, 15.9, 10.6; MS (ESI, m/z) 531 (M+Li)+.
  • Figure US20090264315A1-20091022-C00055
  • 1H NMR (300 MHz, CDCl3) δ 7.48 (s, 1H), 5.21 (s, 2H), 4.60 (s, 1H), 3.61-3.52 (m, 8H), 3.12 (m, 2H), 2.75 (t, 2H, J=7.5 Hz), 1.71 (m, 2H), 1.55 (m, 2H), 1.52 (s, 9H), 1.43 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 164.0, 156.2, 154.6, 148.4, 122.7, 80.9, 79.3, 51.2, 45.3, 43.8 (b), 42.4, 40.5, 29.8, 28.7, 28.6, 26.7, 25.5; MS (ESI, m/z) 467 (M+H)+.
  • Figure US20090264315A1-20091022-C00056
  • 1H NMR (300 MHz, CDCl3) δ 8.75 (b, 1H), 7.71 (s, 1H), 5.40 (d, 1H, J=10.5 Hz), 3.67-3.04 (m, 8H), 3.02 (t, 2H, J=7.2 Hz), 2.74 (t, 2H, 7.2 Hz), 1.23 (s, 9H), 0.97-0.76 (m, 8H); 13C NMR (75 MHz, CDCl3) δ 176.4, 167.0, 154.8, 147.0, 120.6, 80.9, 63.6, 46.3, 44.0 (b), 42.5, 38.1, 33.6, 28.5, 24.7, 21.1, 15.9, 10.7; MS (ESI, m/z) 422 (M−H)+.
  • Figure US20090264315A1-20091022-C00057
  • 1H NMR (300 MHz, CD3OD) δ 7.75 (b, 1H), 5.45 (s, 2H), 3.82 (t, 2H, J=6.3 Hz), 3.60-3.52 (m, 8H), 2.91 (t, 2H, J=6.3 Hz), 1.47 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 164.1, 154.6, 146.2, 123.7, 80.9, 61.7, 51.1, 45.4, 43.8 (b), 42.4, 31.2, 28.6; MS (ESI, m/z) 340 (M+H)+.
  • Figure US20090264315A1-20091022-C00058
  • 1H NMR (300 MHz, CD3OD) δ 7.74 (s, 1H), 5.49 (s, 2H), 4.00 (m, 1H), 3.60-3.54 (m, 8H), 2.81 (d, 2H, J=6.3 Hz), 1.47 (s, 9H), 1.20 (d, 3H, J=6.3 Hz); 13C NMR (75 MHz, CDCl3) δ 164.1, 154.6, 145.8, 123.9, 80.9, 67.3, 51.1, 45.4, 44.0 (b), 42.4, 35.2, 28.6, 23.2; MS (ESI, m/z) 360 (M+Li)+.
  • Figure US20090264315A1-20091022-C00059
  • 1H NMR (300 MHz, CDCl3) δ 7.74 (s, 1H), 5.28 (d, 1H, 7.5 Hz), 3.89 (s, 2H), 3.72-3.17 (m, 8H), 2.94 (m, 4H), 2.55 (m, 1H), 1.42 (s, 9H), 0.99 (m, 3H), 0.74 (m, 3H); 13C NMR (75 MHz, CDCl3) δ 166.9, 154.6, 146.2, 120.7, 80.8, 65.1, 61.0, 46.3, 44.2 (b), 43.6, 42.5, 32.2, 28.6, 19.7, 18.6; MS (ESI, m/z) 382 (M+H)+.
  • Figure US20090264315A1-20091022-C00060
  • 1H NMR (300 MHz, CD3OD) δ 7.98 (s, 1H), 5.74 (d, 1H, J=5.7 Hz), 4.83 (s, 2H), 4.46 (m, 1H), 3.66-3.12 (m, 8H), 3.05 (t, 2H, J=6.6 Hz), 2.73 (m, 2H), 1.67 (m, 2H), 1.54 (m, 2H), 1.48 (s, 9H), 1.44 (s, 9H), 1.13 (d, 3H, J=6.3 Hz); 13C NMR (75 MHz, CD3OD) δ 167.2, 158.3, 156.0, 148.3, 124.0, 81.6, 79.7, 68.3, 66.1, 46.8, 43.5 (b), 43.3, 40.9, 30.3, 28.8, 28.6, 27.6, 25.9, 20.1; MS (ESI, m/z) 511 (M+H)+.
  • Figure US20090264315A1-20091022-C00061
  • 1H NMR (300 MHz, CD3OD) δ 7.93 (s, 1H), 5.88 (t, 1H, J=7.2 Hz), 4.05 (m, 1H), 3.71-3.05 (m, 8H), 2.86 (m, 2H), 2.84 (d, 2H, J=6.3 Hz), 2.14 (m, 2H), 1.39 (m, 11H), 1.27 (m, 11H), 1.20 (d, 3H, J=6.3 Hz); 13C NMR (75 MHz, CD3OD) δ 167.5, 157.4, 155.0, 145.2, 122.4, 80.6, 78.7, 66.8, 59.9, 45.6, 43.6 (b), 42.3, 39.6, 35.0, 31.9, 29.2, 27.7, 27.5, 22.7, 21.9; MS (ESI, m/z) 531 (M+Li)+.
  • Figure US20090264315A1-20091022-C00062
  • 1H NMR (300 MHz, CD3OD) δ 7.95 (s, 1H), 6.00 (q, 1H, J=6.6 Hz), 3.68-3.34 (m, 10H), 2.83 (t, 2H, J=7.5 Hz), 1.80 (m, 2H), 1.76 (d, 3H, J=6.6 Hz), 1.74 (s, 9H), 1.54 (s, 9H); 13C NMR (75 MHz, CD3OD) δ 168.0, 163.5, 156.5, 155.0, 153.0, 147.2, 121.5, 83.3, 80.6, 79.2, 55.7, 45.4, 44.0 (b), 42.3, 40.0, 28.7, 27.4, 27.1, 22.5, 17.2; MS (ESI, m/z) 609 (M+H)+.
  • Figure US20090264315A1-20091022-C00063
  • 1H NMR (300 MHz, CDCl3) δ 11.44 (s, 1H), 8.36 (s, 1H), 7.62 (s, 1H), 5.33 (d, 1H, J=9.9 Hz), 3.61-3.11 (m, 10H), 2.71 (m, 2H), 2.32 (s, 1H), 1.93 (m, 2H), 1.43 (s, 18H), 1.32 (s, 9H), 0.94 (m, 5H), 0.74 (m, 3H); 13C NMR (75 MHz, CDCl3) δ 166.9, 163.7, 156.4, 154.5, 153.4, 147.6, 119.8, 83.2, 80.5, 79.3, 63.4, 46.2, 43.4, 42.4 (b), 38.4, 37.9, 34.0, 28.8, 28.4, 28.2, 24.6, 23.3, 15.9, 10.6; MS (ESI, m/z) 651 (M+H)+.
  • Figure US20090264315A1-20091022-C00064
  • 1H NMR (3000 MHz, CD3OD) δ 7.89 (s, 1H), 7.79 (s, 1H), 5.44 (s, 2H), 3.56-3.30 (m, 10H), 2.77 (t, 2H, J=7.5 Hz), 1.94 (m, 2H), 1.52 (s, 9H), 1.46 (s, 18H); 13C NMR (75 MHz, CD3OD) δ 165.3, 163.4, 156.5, 155.0, 153.0, 147.0, 124.2, 83.3, 80.6, 79.2, 50.9, 44.7, 43.4, 42.7 (b), 42.0, 39.8, 28.8, 27.5, 27.1, 22.4; MS (ESI, m/z) 595 (M+H)+.
  • Figure US20090264315A1-20091022-C00065
  • 1H NMR (300 MHz, CD3OD) δ 7.91 (s, 1H), 5.87 (t, 1H, J=7.2 Hz), 3.72-3.33 (m, 8H), 3.04 (t, 2H, J=7.5 Hz), 2.74 (t, 2H, J=7.2 Hz), 2.18 (m, 2H), 1.69 (2 Hz); 13C NMR (75 MHz, CD3OD) δ 167.4, 157.3, 154.9, 121.3, 80.5, 78.6, 59.9, 47.1, 45.6, 44.0 (b), 42.3, 39.7, 31.9, 31.6, 29.3, 27.8, 27.6, 25.0, 22.7, 22.1, 13.1; MS (ESI, m/z) 537 (M−H)+.
  • Figure US20090264315A1-20091022-C00066
  • 1H NMR (300 MHz, CDCl3) δ 7.62 (b, 1H), 7.27 (s, 1H), 5.81 (q, 1H, J=7.2 Hz), 3.75-3.20 (m, 8H), 3.03 (t, 2H, J=7.2 Hz), 2.75 (t, 2H, J=7.2 Hz), 1.68 (d, 3H, J=7.2 Hz), 1.43 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 176.4, 167.1, 154.9, 146.9, 120.6, 80.9, 55.4, 45.8, 44.0 (b), 42.6, 33.5, 28.6, 21.1, 18.9; MS (ESI, m/z) 380 (M−H)+.
  • Figure US20090264315A1-20091022-C00067
  • 1H NMR (300 MHz, CDCl3) δ 7.88 (s, 1H), 6.92 (d, 2H, J=8.4 Hz), 6.72 (d, 2H, J=8.4 Hz), 5.88 (t, 1H, J=7.8 Hz), 3.87 (t, 2H, J=6.0 Hz), 3.52-3.16 (m, 9H), 2.93 (m, 3H), 1.43 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 166.8, 156.6, 154.7, 145.7, 130.6, 125.8, 121.8, 116.1, 81.0, 61.5, 60.6, 46.0, 43.4, 42.7(b), 42.5, 39.1, 28.6; MS (ESI, m/z) 446 (M+H)+.
  • Figure US20090264315A1-20091022-C00068
  • 1H NMR (300 MHz, CD3OD) δ 7.91 (s, 1H), 6.5.4 (s, 1H), 5.87 (t, 1H, J=7.2 Hz), 3.72-3.33 (m, 8H), 3.04 (t, 2H, J=7.5 Hz), 2.74 (t, 2H, J=7.2 Hz), 2.18 (m, 2H), 1.69 (2 Hz); 13C NMR (75 MHz, CD3OD) δ 167.4, 157.3, 154.9, 121.3, 80.5, 78.6, 59.9, 47.1, 45.6, 43.6 (b), 42.3, 39.7, 31.9, 31.6, 29.3, 27.8, 27.6, 25.0, 22.7, 22.1, 13.1; MS (ESI, m/z) 523 (M+H)+.
  • The following general method may be used to prepare protected monovalent compounds q through e′ (Scheme 3). Synthesis of protected monovalent compound q is demonstrated in Scheme 4 as a representative example.
  • Figure US20090264315A1-20091022-C00069
  • Figure US20090264315A1-20091022-C00070
  • Characterization data for protected monovalent compounds q through e′ follows:
  • Figure US20090264315A1-20091022-C00071
  • 1H NMR (500 MHz, CD3OD) δ 8.44 (d, J=3.0 Hz, 1H), 8.34 (d, J=11.0 Hz, 1H), 8.21 (d, J=9.5 Hz, 1H), 7.79 (s, 1H), 7.71 (s, 1H), 7.44 (d, J=7.5 Hz, 1H), 7.27 (d, J=8.0 Hz, 1H), 7.04 (t, J=7.5 Hz, 1H), 6.98-6.95 (m, 3H), 6.89 (s, 1H), 6.62 (d, J=8.5 Hz, 2H), 5.80-5.77 (m, 1H), 5.55 (dd, J=9.5, 6.0 Hz, 1H), 3.81-3.67 (m, 15H), 1.45 (s, 9H), 1.42 (s, 9H); 13C NMR (125 MHz, CD3OD) δ 171.7, 170.3, 168.8, 157.7, 156.2, 147.2, 138.1, 137.8, 133.0, 131.2, 128.2, 127.4, 125.0, 124.79, 124.76, 124.5, 123.5, 123.2, 122.6, 120.1, 118.8, 116.3, 112.4, 109.3, 84.5, 81.6, 66.5, 65.2, 53.6, 44.8, 43.2, 38.2, 29.3, 28.6, 28.0; MS (MALDI) calcd for C45H52N9O8 (M+H)+ 846, found 846.
  • Figure US20090264315A1-20091022-C00072
  • 1H NMR (500 MHz, CD3OD) δ 8.53 (s, 1H), 8.36 (s, 1H), 8.27 (s, 1H), 7.84 (s, 1H), 7.72 (s, 1H), 7.45 (d, J=8.0 Hz, 1H), 7.27 (d, J=8.5 Hz, 1H), 7.21 (s, 1H), 7.04 (t, J=7.5 Hz, 1H), 6.96 (t, J=7.3 Hz, 1H), 6.90 (s, 1H), 5.80-5.77 (m, 1H), 5.49-5.46 (m, 1H), 3.77-3.38 (m, 16H), 2.98 (t, J=6.5, 2H), 2.31-2.23 (m, 2H), 1.45 (s, 9H), 1.34 (s, 9H), 1.33-1.14 (m, 4H); 13C NMR (125 MHz, CDCl3) δ 171.6, 170.6, 170.4, 158.4, 156.2, 147.6, 138.1, 137.8, 132.9, 129.4, 128.8, 128.6, 128.1, 125.0, 124.8, 124.5, 123.5, 122.9, 122.6, 120.1, 118.8, 112.4, 109.3, 81.6, 79.8, 67.2, 65.1, 64.2, 53.6, 45.0 (br), 43.2, 40.7, 32.5, 30.1, 29.3, 28.7, 28.6, 24.0; MS (MALDI) calcd for C44H57N10O9 (M+H)+ 869 found 869.
  • Figure US20090264315A1-20091022-C00073
  • 1H NMR (500 MHz, CDCl3) δ 8.38 (s, 1H), 8.27 (d, J=5.0 Hz, 1H), 8.10 (s, 1H), 7.93 (s, 1H), 7.89 (s, 1H), 7.77 (s, 1H), 7.51 (d, J=7.5 Hz, 1H), 7.35 (d, J=8.0 Hz, 1H), 7.18 (t, J=7.5 Hz, 1H), 7.12 (t, J=7.5 Hz, 1H), 6.81 (s, 1H), 5.76-5.73 (m, 1H), 5.41 (dd, J=9.5, 6.0 Hz, 1H), 3.79 (s, 3H), 3.75-3.35 (m, 10H), 2.05-2.01 (m, 1H), 1.49 (s, 9H), 1.48 (s, 9H), 1.47-1.37 (m, 2H), 0.99 (d, J=3.3 Hz, 3H), 0.95 (d, J=3.3 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 169.8, 168.9, 168.8, 168.3, 154.5, 146.5, 146.3, 136.7, 136.0, 131.6, 131.5, 126.7, 124.0, 123.8, 123.2, 122.4, 120.7, 119.8, 119.7, 118.0, 111.5, 108.7, 83.6, 80.3, 63.4, 62.1, 53.2, 47.6, 43.7 (br), 42.1, 41.6, 29.0, 28.3, 27.9, 24.7, 22.6, 21.3; MS (MALDI) calcd for C42H54N9O7 (M+H)+ 796, found 796.
  • Figure US20090264315A1-20091022-C00074
  • 1H NMR (300 MHz, CD3OD) δ 8.56 (s, 1H), 8.37 (s, 1H), 8.28 (s, 1H), 7.86 (s, 1H), 7.74 (s, 1H), 7.45 (d, J=7.8 Hz, 1H), 7.28 (d, J=8.4 Hz, 1H), 7.05 (t, J=7.4 Hz, 1H), 6.97 (t, J=7.4 Hz, 1H), 6.90 (s, 1H), 5.80 (dd, J=9.3, 5.4 Hz, 1H), 5.47 (dd, J=9.9, 5.4 Hz, 1H), 3.79 (s, 3H), 3.78-3.40 (m, 10H), 2.61-2.38 (m, 2H), 2.45 (t, J=6.9 Hz, 2H), 1.47 (s, 9H), 1.46 (s, 9H), 1.41 (s, 9H); 13C NMR (75 MHz, CDCl3) δ 171.7, 170.6, 169.2, 167.7, 155.0, 146.5, 146.0, 137.1, 136.7, 131.9, 131.9, 127.0, 123.9, 123.6, 123.4, 123.3, 122.3, 121.9, 121.5, 118.9, 117.6, 111.3, 108.2, 83.5, 80.9, 80.5, 64.0, 62.9, 52.4, 43.7 (br), 42.1, 30.9, 28.2, 27.4, 27.1, 27.0, 26.9; MS (MALDI) calcd for C45H58N9O9 (M+H)+ 868, found 868.
  • Figure US20090264315A1-20091022-C00075
  • 1H NMR (500 MHz, CD3OD) δ 9.53 (s, 1H), 8.30 (d, J=4.0 Hz, 1H), 8.19 (d, J=5.0 Hz, 1H), 7.80 (s, 1H), 7.68 (s, 1H), 7.44 (d, J=8.0 Hz, 1H), 7.26 (d, J=8.5 Hz, 1H), 7.02 (t, J=7.5 Hz, 1H), 6.95 (t, J=7.5 Hz, 1H), 6.87 (s, 1H), 5.75 (dd, J=9.5, 5.0 Hz, 1H), 5.66 (dd, J=6.0, 3.5 Hz, 1H), 4.36 (dd, J=12.0, 5.5 Hz, 1H), 4.14 (dd, J=12.5, 3.5 Hz, 1H), 3.77 (s, 3H), 3.75 (s, 3H), 3.74-3.38 (m, 10H), 1.44 (s, 9H); 13C NMR (125 MHz, CDCl3) δ 171.6, 170.4, 169.1, 156.2, 147.2, 147.1, 138.1, 137.8, 133.0, 132.9, 128.2, 125.0, 124.9, 124.5, 123.7, 123.4, 122.6, 120.1, 118.8, 112.5, 109.4, 81.6, 66.3, 65.1, 62.8, 53.62, 53.61, 42.4 (br), 43.2, 29.3, 28.6; MS (MALDI) calcd for C36H42N9O8 (M+H)+ 728, found 728.
  • Figure US20090264315A1-20091022-C00076
  • 1H NMR (500 MHz, CD3OD) δ 8.64 (t, J=1.5 Hz, 1H), 8.51 (s, 1H), 8.38 (t, J=1.5 Hz, 1H), 7.88 (s, 1H), 7.83 (t, J=1.5 Hz, 1H), 6.96 (d, J=8.5 Hz, 2H), 6.63 (d, J=8.5 Hz, 2H), 5.57 (dd, J=10.0, 6.0 Hz, 1H), 5.44 (dd, J=11.0, 5.5 Hz, 1H), 3.77-3.38 (m, 10H), 2.28-2.22 (m, 1H), 2.10-2.04 (m, 1H), 1.47 (s, 9H), 1.46 (s, 9H), 1.43 (s, 9H), 1.42-1.39 (m, 1H), 0.98 (d, J=6.5 Hz, 3H), 0.94 (d, J=5.0 Hz, 3H); 13C NMR (125 MHz, CD3OD δ 171.7, 169.6, 168.8, 157.7, 156.2, 147.5, 147.2, 138.3, 133.2, 131.2, 127.4, 125.0, 124.5, 123.2, 122.8, 116.4, 84.5, 84.4, 81.7, 66.6, 63.5, 44.0 (br), 43.3, 41.6, 38.3, 28.6, 28.11, 28.09, 26.1, 23.0, 21.5; MS (MALDI) calcd for C43H58N8O8Na (M+Na)+ 837, found 837.
  • Figure US20090264315A1-20091022-C00077
  • 1H NMR (500 MHz, CDCl3) δ 8.33 (s, 1H), 8.13 (s, 1H), 8.08 (s, 1H), 7.90 (s, 1H), 7.84 (s, 1H), 7.12 (d, J=8.0 Hz, 2H), 7.06 (d, J=8.0 Hz, 2H), 5.50 (t, J=7.3 Hz, 1H), 5.40 (dd, J=9.0, 5.0 Hz, 1H), 4.60 (s, 1H, N—H), 3.78 (s, 6H), 3.75-3.38 (m, 10H), 3.07 (br, 2H), 2.25-2.13 (m, 2H), 1.53-1.23 (m, 40H); 13C NMR (125 MHz, CDCl3) δ 169.7, 169.1, 167.0, 155.9, 154.4, 151.5, 150.3, 146.8, 146.3, 136.7, 132.2, 131.5, 131.4, 129.9, 124.0, 123.8, 123.7, 121.5, 120.2, 119.8, 84.0, 83.5, 80.2, 64.6, 62.7, 53.1, 47.6, 43.5 (br), 42.1, 39.8, 38.3, 32.4, 29.2, 28.28, 28.26, 27.7, 27.6, 22.8; MS (MALDI) calcd for C50H68N9O12 (M+H)+ 988, found 988.
  • Figure US20090264315A1-20091022-C00078
  • 1H NMR (500 MHz, CD3OD) δ 8.60 (s, 1H), 8.50 (s, 1H), 8.37 (s, 1H), 7.88 (s, 1H), 7.83 (s, 1H), 6.97 (d, J=8.0 Hz, 2H), 6.63 (d, J=8.0 Hz, 2H), 5.57 (dd, J=10.0, 6.5 Hz, 1H), 5.48 (dd, J=9.5, 5.5 Hz, 1H), 3.77-3.39 (m, 10H), 2.60-2.56 (m, 1H), 2.49-2.42 (m, 1H), 2.26 (m, 2H), 1.47 (s, 9H), 1.46 (s, 9H), 1.43 (s, 9H), 1.42 (s, 9H); 13C NMR (125 MHz, CD3OD) δ 172.9, 171.8, 168.9, 168.8, 157.7, 156.2, 147.6, 147.2, 138.3, 133.2, 133.1, 131.2, 127.4, 125.0, 124.6, 124.5, 123.3, 123.1, 116.4, 84.7, 84.5, 82.1, 81.7, 66.6, 64.1, 44.4 (br), 43.3, 38.3, 32.1, 28.6, 28.32, 28.25, 28.12, 28.10; MS (MALDI) calcd for C46H63N8O10 (M+H)+ 887, found 887.
  • Figure US20090264315A1-20091022-C00079
  • 1H NMR (500 MHz, CD3OD) δ 8.64 (s, 1H), 8.52 (s, 1H), 8.39 (s, 1H), 7.89 (s, 1H), 7.84 (s, 1H), 6.97 (d, J=8.0 Hz, 2H), 6.63 (d, J=8.5 Hz, 2H), 5.71 (dd, J=6.5, 4.0 Hz, 1H), 5.57 (dd, J=9.5, 6.0 Hz, 1H), 4.38 (dd, J=12.0, 6.5 Hz, 1H), 4.16 (dd, J=12.0, 3.0 Hz, 1H), 3.82 (s, 3H), 3.79-3.39 (m, 10H), 1.46 (s, 9H), 1.44 (s, 9H); 13C NMR (125 MHz, CD3OD) δ 171.8, 169.1, 168.8, 157.7, 156.2, 147.3, 147.2, 138.3, 133.2, 133.1, 131.2, 127.4, 125.0, 124.55, 124.49, 123.8, 123.3, 116.3, 84.6, 81.6, 66.6, 66.4, 62.8, 53.6, 44.5 (br), 43.3, 38.3, 28.6, 28.1; MS (MALDI) calcd for C37H47N8O9 (M+H)+ 747, found 747.
  • Figure US20090264315A1-20091022-C00080
  • 1H NMR (500 MHz, CDCl3) δ 8.39 (s, 1H), 8.14 (s, 2H), 7.91 (s, 2H), 5.44-5.40 (m, 2H), 4.56 (br, 1H, N—H), 3.80 (s, 3H), 3.78-3.40 (m, 8H), 3.08 (br, 2H), 2.34-2.26 (m, 1H), 2.21-2.17 (m, 1H), 2.08-1.98 (m, 2H), 1.54-1.24 (m, 32H), 0.98 (d, J=6.5 Hz, 3H), 0.94 (d, J=6.5 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 169.8, 169.1, 168.3, 155.9, 154.5, 146.9, 146.7, 136.8, 131.7, 131.5, 124.0, 123.9, 123.8, 119.8, 119.6, 83.5, 80.3, 79.2, 62.8, 62.0, 53.1, 47.7, 43.6 (br), 42.1, 41.7, 39.9, 32.5, 29.3, 28.3, 27.9, 24.7, 22.8, 22.6, 21.3; MS (MALDI) calcd for C42H64N9O9 (M+H)+ 838, found 838.
  • Figure US20090264315A1-20091022-C00081
  • 1H NMR (500 MHz, CD3OD) δ 8.61 (s, 1H), 8.60 (s, 1H), 8.34 (s, 1H), 7.85 (s, 2H), 5.72-5.70 (m, 1H), 5.44 (dd, J=9.0, 5.5 Hz, 1H), 4.38 (dd, J=12.0, 6.0 Hz, 1H), 4.17 (d, J=9.5 Hz, 1H), 3.82 (s, 3H), 3.78 (s, 3H), 3.77-3.42 (m, 8H), 3.00 (t, J=6.5 Hz, 2H), 2.37-2.25 (m, 2H), 1.58-1.19 (m, 22H); 13C NMR (125 MHz, CDCl3) δ 171.6, 170.7, 169.1, 158.4, 156.2, 147.6, 147.3, 138.2, 133.1, 132.9, 125.0, 124.5, 124.4, 123.7, 122.9, 81.6, 79.8, 66.3, 64.2, 62.8, 53.6, 44.4 (br), 43.3, 40.8, 32.5, 30.2, 28.8, 28.7, 28.6, 24.1; MS (MALDI) calcd for C36H52N9O10 (M+H)+ 770, found 770.
  • Figure US20090264315A1-20091022-C00082
  • 1H NMR (500 MHz, CDCl3) δ 8.39 (s, 1H), 8.24 (s, 1H), 8.14 (s, 1H), 7.92 (s, 2H), 5.42 (dd, J=10.0, 5.0 Hz, 1H), 5.18 (d, J=8.5 Hz, 1H), 4.54 (br, 1H, N—H), 3.81 (s, 3H), 3.80-3.42 (m, 8H), 3.10-3.07 (m, 2H), 2.31-2.04 (m, 3H), 1.63-1.26 (m, 33H), 1.05 (d, J=6.5 Hz, 3H), 0.91 (t, J=7.5 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 169.8, 169.1, 167.8, 155.9, 154.5, 146.9, 146.5, 136.8, 131.8, 131.5, 124.0, 123.9, 123.8, 119.9, 119.7, 83.6, 80.3, 68.4, 62.8, 53.1, 47.6, 43.4 (br), 42.1, 39.9, 38.8, 32.5, 29.3, 28.3, 27.9, 25.1, 22.8, 15.5, 10.8; MS (MALDI) calcd for C42H64N9O9 (M+H)+ 838, found 838.
  • Figure US20090264315A1-20091022-C00083
  • 1H NMR (500 MHz, CD3OD) δ 8.86 (s, 1H), 8.64 (s, 1H), 8.42 (s, 1H), 7.89 (s, 2H), 5.71 (dd, J=6.0, 3.5 Hz, 1H), 5.45 (dd, J=10.5, 5.0 Hz, 1H), 4.38 (dd, J=12.0, 6.0 Hz, 1H), 4.16 (dd, J=12.0, 3.0 Hz, 1H), 3.82 (s, 3H), 3.81-3.45 (m, 8H), 2.29-2.22 (m, 1H), 2.10-2.04 (m, 1H), 1.47 (s, 9H), 1.46 (s, 9H), 1.46-1.34 (m, 1H), 0.98 (d, J=6.5 Hz, 3H), 0.95 (d, J=6.5 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 171.7, 169.6, 169.0, 156.2, 147.5, 147.2, 138.2, 133.1, 133.0, 125.0, 124.5, 124.4, 123.8, 122.9, 84.4, 81.6, 66.3, 63.5, 62.8, 53.6, 44.5 (br), 43.2, 41.5, 28.6, 28.1, 26.0, 23.0, 21.5; MS (ESI) calcd for C34H49N8O8 (M+H)+ 697, found 697.
  • Figure US20090264315A1-20091022-C00084
  • 1H NMR (500 MHz, CD3OD) δ 8.66 (s, 1H), 8.62 (s, 1H), 8.44 (s, 1H), 7.90 (s, 2H), 5.50-5.44 (m, 2H), 3.82-3.45 (m, 8H), 2.60-2.55 (m, 1H), 2.48-2.44 (m, 1H), 2.27-2.22 (m, 3H), 2.10-2.04 (m, 1H), 1.48 (s, 9H), 1.47 (s, 9H), 1.46 (s, 9H), 1.42 (s, 9H), 1.41-1.34 (m, 1H), 0.98 (d, J=6.5 Hz, 3H), 0.95 (d, J=7.0 Hz, 3H); 13C NMR (125 MHz, CDCl3) δ 172.9, 171.8, 169.6, 168.9, 156.2, 147.7, 147.6, 138.4, 133.2, 133.1, 125.0, 124.6, 123.1, 122.9, 84.7, 84.5, 82.1, 81.7, 64.1, 63.5, 44.8 (br), 43.3, 41.6, 32.1, 28.6, 28.32, 28.27, 28.12, 28.11, 26.1, 23.0, 21.5; MS (MALDI) calcd for C37H53N8O10 (M+H)+ 769, found 769.
  • Figure US20090264315A1-20091022-C00085
  • 1H NMR (500 MHz, CD3OD) δ 8.62 (s, 1H), 8.60 (s, 1H), 8.38 (s, 1H), 7.87 (s, 2H), 5.70 (dd, J=6.0, 3.5 Hz, 1H), 5.48 (dd, J=10.0, 5.5 Hz, 1H), 4.49 (dd, J=12.0, 6.0 Hz, 1H), 4.17 (dd, J=11.5, 3.0 Hz, 1H), 3.82 (s, 3H), 3.81-3.45 (m, 8H), 2.60-2.55 (m, 1H), 2.50-2.43 (m, 1H), 2.27 (t, J=7.3 Hz, 2H), 1.47 (s, 9H), 1.45 (s, 9H), 1.42 (s, 9H); 13C NMR (125 MHz, CDCl3) δ 172.8, 171.7, 169.1, 168.9, 156.2, 147.7, 147.4, 138.3, 133.2, 133.0, 125.0, 124.6, 124.5, 123.8, 123.1, 84.7, 82.1, 81.6, 66.3, 64.1, 62.9, 53.6, 44.5 (br), 43.3, 32.2, 28.6, 28.3, 28.2, 28.1; MS (ESI) calcd for C43H65N8O9 (M+H)+ 837, found 837.
  • The following general methods may be used to prepare protected monovalent compounds f′ through m′ (Schemes 5 and 6). Synthesis of a protected monovalent compound from this group is demonstrated in Scheme 7 as a representative example.
  • Figure US20090264315A1-20091022-C00086
  • Figure US20090264315A1-20091022-C00087
  • Figure US20090264315A1-20091022-C00088
  • Characterization data for protected monovalent compounds f′ through m′ follows:
  • Figure US20090264315A1-20091022-C00089
  • 1H NMR (500 MHz, CDCl3) δ 4.93 (br, 1H), 4.85 (d, 1H, J=16.1 Hz), 4.42-4.32 (m, 2H), 3.77 (d, 1H, J=1.7 Hz), 3.66 (d, 1H, J=16.1 Hz), 3.62-3.32 (m, 8H), 3.06 (s, 3H), 1.43 (s, 9H), 1.27 (d, 3H, J=6.5 Hz). 13C NMR (125 MHz, CDCl3) δ 168.0, 165.4, 164.7, 154.2, 80.5, 71.2, 68.7, 52.0, 47.8, 44.4, 42.0, 36.1, 28.2, 19.7. Desired MS 399.22 (M+H). MS Found (ESI, m/z) 399.22 (M+H)
  • Figure US20090264315A1-20091022-C00090
  • 1H NMR (500 MHz, CDCl3) δ 5.26 (t, 1H, J=7.6 Hz), 4.69 (br, 1H), 4.03 (d, 1H, J=17.4 Hz), 3.96-3.81 (m, 3H), 3.58-3.30 (m, 6H), 3.27-3.18 (m, 2H), 3.03-2.93 (m, 2H), 2.87 (s, 3H), 1.80-1.58 (m, 2H), 1.45-1.37 (m, 2H), 1.35 (s, 9H), 1.31 (s, 9H), 1.20-1.12 (m, 2H). Desired MS 548.32 (M+Na). MS Found (ESI, m/z) 548.30 (M+Na)
  • Figure US20090264315A1-20091022-C00091
  • 1H NMR (500 MHz, CDCl3) δ 5.26 (t, 1H, J=7.6 Hz), 4.60 (br, 1H), 4.11 (br, 1H), 3.83 (d, 1H, J=17.6 Hz), 3.74 (d, 1H, J=4.3 Hz), 3.60-3.31 (m, 6H), 3.27-3.11 (m, 2H), 3.04-2.97 (m, 2H), 2.88 (s, 3H), 1.88-1.78 (m, 2H), 1.59-1.47 (m, 2H), 1.47-1.39 (m, 2H), 1.35 (s, 9H), 1.33 (s, 9H), 1.31-1.24 (m, 1H), 1.24-1.14 (m, 2H), 0.89 (t, 3H, J=7.3 Hz), 0.83 (d, 3H, J=6.8 Hz). 13C NMR (125 MHz, CDCl3) δ 167.8, 162.9, 164.0, 155.8, 154.2, 80.1, 78.9, 66.6, 51.1, 45.6, 45.2, 41.9, 39.8, 38.6, 33.3, 29.5, 28.3, 28.2, 28.1, 26.2, 23.2, 14.5, 11.7. Desired MS 582.38 (M+H). MS Found (ESI, m/z) 582.39 (M+H).
  • Figure US20090264315A1-20091022-C00092
  • 1H NMR (500 MHz, CDCl3) δ 5.22 (t, 1H, J=7.6 Hz), 4.69 (br, 1H), 4.10 (br, 1H), 3.88-3.78 (m, 2H), 3.60-3.09 (m, 8H), 3.05-2.96 (m, 2H), 2.89 (s, 3H), 2.30-2.17 (m, 2H), 2.13-2.04 (m, 1H), 1.95-1.85 (m, 1H), 1.85-1.76 (m, 1H), 1.67-1.57 (m, 1H), 1.49-1.28 (m, 29H), 1.23-1.12 (m, 2H). 13C NMR (125 MHz, CDCl3) δ 171.1, 167.6, 165.6, 163.5, 155.8, 154.2, 81.0, 80.1, 78.8, 61.6, 51.2, 45.2, 45.0, 41.9, 39.8, 32.2, 30.3, 29.5, 28.2, 28.1, 28.0, 27.9, 26.3, 23.0. Desired MS 676.40 (M+H). MS Found (ESI, m/z) 676.40 (M+H)
  • Figure US20090264315A1-20091022-C00093
  • 1H NMR (500 MHz, CDCl3) δ 6.76 (t, 1H, J=5.6 Hz), 4.83 (d, 1H, J=4.8 Hz), 4.67 (d, 1H, J=16.3 Hz), 4.40-4.33 (m, 2H), 3.77 (d, 1H, J=1.9 Hz), 3.68 (d, 1H, J=16.3 Hz), 3.55-3.49 (m, 2H), 3.42-3.32 (m, 6H), 3.17 (q, 2H, J=6.7 Hz), 3.04 (s, 3H), 2.31-2.15 (m, 4H), 1.59-1.51 (m, 2H), 1.42 (s, 9H), 1.32-1.17 (m, 15H). 13C NMR (125 MHz, CDCl3) δ 171.9, 167.4, 167.0, 164.9, 154.5, 80.3, 71.6, 68.6, 51.9, 49.4, 45.3, 41.2, 39.7, 36.2, 33.2, 29.1, 29.1, 29.0, 29.0, 28.3, 26.6, 25.1, 20.1. Desired MS 582.38 (M+H). MS Found (ESI, m/z) 582.38 (M+H).
  • Figure US20090264315A1-20091022-C00094
  • 1H NMR (500 MHz, CDCl3) δ 6.22 (t, 1H, J=5.6 Hz), 4.82-4.74 (m, 1H), 4.71 (t, 1H, J=7.8 Hz), 4.07 (d, 1H, J=17.3 Hz), 3.87-3.79 (m, 2H), 3.50-3.44 (m, 2H), 3.35-3.25 (m, 6H), 3.15-2.94 (m, 4H), 2.87 (s, 3H), 2.28-2.04 (m, 5H), 1.96-1.81 (m, 2H), 1.63-1.38 (m, 5H), 1.35 (s, 9H), 1.33 (s, 9H), 1.31 (s, 9H), 1.24-1.09 (m, 16H). 13C NMR (125 MHz, CDCl3) δ 171.6, 171.1, 168.6, 166.0, 163.2, 155.8, 154.3, 80.9, 80.0, 78.7, 61.6, 55.6, 45.5, 45.2, 41.0, 39.8, 39.3, 38.4, 33.1, 32.1, 30.2, 29.3, 29.2, 29.1, 29.1, 28.9, 28.2, 28.1, 27.8, 26.9, 26.5, 26.5, 25.0, 23.0. Desired MS 837.56 (M+H). MS Found (ESI, m/z) 837.57 (M+H).
  • Figure US20090264315A1-20091022-C00095
  • 13C NMR (125 MHz, CDCl3) δ 171.7, 168.8, 164.4, 163.4, 155.9, 154.4, 80.1, 79.1, 78.9, 55.4, 51.6, 45.6, 45.2, 41.1, 39.3, 33.2, 33.0, 29.3, 29.2, 29.2, 29.2, 29.2, 29.0, 28.3, 28.2, 28.2, 26.7, 26.6, 25.1, 22.8. Desired MS 709.48 (M+H). MS Found (ESI, m/z) 709.47 (M+H).
  • Figure US20090264315A1-20091022-C00096
  • 1H NMR (500 MHz, CDCl3) δ 6.30 (t, 1H, J=5.0 Hz), 4.75-4.69 (m, 2H), 4.07 (d, 1H, J=17.5 Hz), 3.83 (d, 1H, J=17.5 Hz), 3.76 (d, 1H, J=4.1 Hz), 3.50-3.44 (m, 2H), 3.35-3.25 (m, 6H), 3.15-2.94 (m, 4H), 2.86 (s, 3H), 2.21 (t, 2H, J=7.5 Hz), 1.88-1.76 (m, 2H), 1.57-1.38 (m, 6H), 1.35 (s, 9H), 1.31 (s, 9H), 1.29-1.09 (m, 17H), 0.88 (t, 3H, J=7.2 Hz), 0.80 (d, 3H, J=6.8 Hz). 13C NMR (125 MHz, CDCl3) δ 171.6, 168.8, 165.2, 163.7, 155.8, 154.3, 80.0, 78.8, 66.4, 55.6, 46.0, 45.1, 41.0, 39.8, 39.2, 38.4, 33.1, 33.1, 29.3, 29.2, 29.1, 29.1, 28.9, 28.2, 28.1, 26.9, 26.5, 26.1, 25.0, 23.1, 14.3, 11.7. Desired MS 765.54 (M+H). MS Found (ESI, m/z) 765.54 (M+H).
  • The following general method may be used to prepare protected monovalent compounds n′ through g″ (Schemes 8 and 9). Synthesis of protected monovalent compound v′ is demonstrated in Scheme 10 as a representative example.
  • Figure US20090264315A1-20091022-C00097
  • Figure US20090264315A1-20091022-C00098
  • Figure US20090264315A1-20091022-C00099
  • Characterization data for protected monovalent compounds n′ through g″ follows:
  • Figure US20090264315A1-20091022-C00100
  • 1H NMR (500 MHz, CDCl3) δ 6.59 (d, 1H, J=8.2 Hz), 5.42-5.36 (m, 1H), 5.22 (d, 1H, J=8.5 Hz), 4.98-4.89 (m, 1H), 4.65 (br, 1H), 4.10 (br, 2H), 3.78 (dd, 1H, J=3.2, 9.4 Hz), 3.15-2.94 (dd, 1H, J=3.9, 9.4 Hz), 3.12-2.99 (m, 2H), 2.81-2.65 (br, 2H), 2.39-2.30 (m, 1H), 1.94-1.75 (m, 4H), 1.70-1.57 (m, 2H), 1.51-1.31 (m, 31H), 1.06 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.2, 167.1, 165.4, 156.1, 155.0, 154.6, 80.3, 80.0, 79.6, 79.1, 73.8, 62.1, 46.9, 46.5, 42.9, 39.9, 33.2, 29.4, 28.4, 28.4, 28.3, 28.2, 27.2, 22.3. Desired MS 719.44 (M+Na). MS Found (ESI, m/z) 719.42 (M+Na).
  • Figure US20090264315A1-20091022-C00101
  • 1H NMR (500 MHz, CDCl3) δ 6.77 (br, 1H), 5.32-5.23 (m, 2H), 4.98-4.89 (m, 1H), 4.70 (br, 1H), 4.09 (br, 2H), 3.12-3.01 (m, 2H), 2.72 (br, 2H), 2.41-2.17 (m, 4H), 2.12-2.02 (m, 1H), 1.96-1.74 (m, 4H), 1.69-1.55 (m, 2H), 1.52-1.32 (m, 40H). 13C NMR (125 MHz, CDCl3) δ 174.4, 172.2, 167.3, 166.4, 156.1, 155.1, 154.6, 81.2, 80.4, 79.6, 79.1, 47.1, 45.3, 42.9, 39.9, 33.2, 31.2, 29.4, 28.5, 28.4, 28.4, 28.3, 28.3, 28.0, 22.3. Desired MS 761.45 (M+Na). MS Found (MALDI, m/z) 761.06 (M+Na).
  • Figure US20090264315A1-20091022-C00102
  • 1H NMR (500 MHz, CDCl3) δ 6.95 (br, 1H), 5.66-5.58 (m, 1H), 5.24-5.13 (m, 1H), 5.03-4.93 (m, 1H), 4.73-4.63 (m, 1H), 4.25-4.05 (br, 2H), 3.16-3.06 (m, 2H), 3.06-2.97 (m, 1H), 2.88 (ddd, 1H, J=2.3, 5.2, 16.5 Hz), 2.78 (br, 2H), 2.35 (tt, 1H, J=3.7, 11.5 Hz), 2.00-1.79 (m, 4H), 1.73-1.62 (m, 2H), 1.57-1.36 (m, 40H). 13C NMR (125 MHz, CDCl3) δ 174.0, 169.6, 167.4, 165.6, 156.1, 155.0, 154.6, 82.3, 80.4, 79.6, 79.2, 47.0, 43.0, 42.2, 40.0, 37.6, 33.4, 33.2, 29.4, 28.4, 28.3, 28.3, 28.0, 22.3, 22.2. Desired MS 747.44 (M+Na). MS Found (MALDI, m/z) 747.16 (M+Na).
  • Figure US20090264315A1-20091022-C00103
  • 1H NMR (500 MHz, CDCl3) δ 6.92 (d, 2H, J=8.5 Hz), 6.85 (d, 2H, J=8.5 Hz), 6.34 (d, 1H, J=8.2 Hz), 5.58-5.51 (m, 1H), 5.22 (d, 1H, J=8.5 Hz), 4.96-4.86 (m, 1H), 4.69 (br, 1H), 4.05 (br, 2H), 3.21 (dd, 1H, J=6.2, 14.0 Hz), 3.15-3.01 (m, 3H), 2.74-2.60 (br, 2H), 2.21 (tt, 1H, J=3.7, 11.5 Hz), 1.91-1.60 (m, 4H), 1.60-1.30 (m, 33H), 1.28 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.0, 171.2, 167.3, 166.2, 156.1, 155.1, 154.6, 129.8, 129.7, 124.3, 80.4, 79.2, 78.6, 47.0, 45.5, 42.9, 39.9, 38.7, 33.1, 29.4, 28.8, 28.6, 28.4, 28.4, 28.3, 28.1, 22.3. Desired MS 795.47 (M+Na). MS Found (MALDI, m/z) 795.17 (M+Na).
  • Figure US20090264315A1-20091022-C00104
  • 1H NMR (500 MHz, CDCl3) δ 6.53 (d, 1H, J=8.6 Hz), 5.44 (dt, 1H, J=3.5, 8.6 Hz), 5.18 (d, 1H, J=9.2 Hz), 4.98-4.90 (m, 11H), 4.14 (br, 2H), 3.81 (dd, 1H, J=2.6, 9.2 Hz), 3.66 (dd, 1H, J=3.7, 9.2 Hz), 2.78 (br, 2H), 2.37 (tt, 1H, J=3.7, 11.5 Hz), 1.97-1.61 (m, 5H), 1.51-1.38 (m, 19H), 1.24-1.13 (m, 1H), 1.10 (s, 9H), 0.95-0.87 (m, 6H). 13C NMR (125 MHz, CDCl3) δ 174.1, 166.5, 165.2, 155.1, 154.6, 80.3, 79.6, 73.8, 62.3, 51.6, 46.5, 43.0, 38.9, 28.5, 28.4, 28.3, 28.2, 27.2, 25.0, 15.1, 11.3. Desired MS 582.38 (M+H). MS Found (MALDI, m/z) 583.08 (M+H).
  • Figure US20090264315A1-20091022-C00105
  • 1H NMR (300 MHz, CDCl3) δ 6.80 (d, 1H, J=7.8 Hz), 5.44 (br, 1H), 5.35-5.21 (m, 1H), 4.71 (br, 1H), 4.49 (d, 2H, J=5.9 Hz), 4.07 (br, 2H), 3.14-2.96 (m, 2H), 2.80-2.60 (m, 2H), 2.40-2.24 (m, 1H), 2.01-1.56 (m, 6H), 1.54-1.25 (m, 31H). 13C NMR (75 MHz, CDCl3) δ 174.5, 167.2, 164.5, 156.2, 155.5, 154.6, 80.5, 79.6, 79.2, 77.2, 45.2, 42.9, 39.8, 35.8, 33.0, 29.3, 28.5, 28.4, 28.4, 28.2, 22.2. Desired MS 633.37 (M+H). MS Found (ESI, m/z) 633.19 (M+H).
  • Figure US20090264315A1-20091022-C00106
  • 1H NMR (500 MHz, CDCl3) δ 6.91-6.82 (m, 1H), 5.58 (dt, 1H, J=4.9, 8.8 Hz), 5.43 (d, 1H, J=8.8 Hz), 5.06 (br, 1H), 4.10 (br, 2H), 3.80-3.71 (m, 1H), 3.65 (dd, 1H, J=4.1, 9.2 Hz), 2.97 (dt, 1H, J=4.5, 16.5 Hz), 2.82 (ddd, 1H, J=2.6, 5.2, 16.5 Hz), 2.73 (br, 2H), 2.33-2.25 (m, 1H), 1.87-1.76 (m, 2H), 1.68-1.57 (m, 2H), 1.42 (br, 18H), 1.39 (s, 9H), 1.08 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 173.8, 169.6, 166.3, 165.5, 155.1, 154.6, 82.2, 80.4, 79.6, 73.8, 62.3, 48.2, 43.0, 42.2, 37.6, 28.4, 28.4, 28.3, 28.2, 27.9, 27.2. Desired MS 662.38 (M+Na). MS Found (MALDI, m/z) 661.93 (M+Na).
  • Figure US20090264315A1-20091022-C00107
  • 1H NMR (500 MHz, CDCl3) δ 6.92-6.81 (m, 4H), 6.15 (d, 1H, J=8.4 Hz), 5.59-5.53 (m, 1H), 5.43 (d, 1H, J=8.4 Hz), 5.11-5.02 (m, 1H), 4.04 (br, 2H), 3.80-3.72 (m, 1H), 3.23 (dd, 1H, J=6.0, 14.1 Hz), 3.09 (dd, 1H, J=6.5, 14.1 Hz), 2.67 (dd, 1H, J=4.1, 9.3 Hz), 2.19 (tt, 1H, J=3.7, 11.5 Hz), 1.75-1.47 (m, 4H), 1.43 (s, 9H), 1.42 (s, 9H), 1.28 (s, 9H), 1.10 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 173.8, 166.3, 165.9, 155.1, 154.6, 154.5, 129.8, 129.6, 124.2, 80.5, 79.6, 78.5, 73.9, 62.4, 48.2, 46.4, 42.9, 38.5, 28.8, 28.6, 28.4, 28.3, 28.1, 27.2. Desired MS 710.42 (M+Na). MS Found (MALDI, m/z) 710.03 (M+Na).
  • Figure US20090264315A1-20091022-C00108
  • 1H NMR (500 MHz, CDCl3) δ 6.62 (d, 1H, J=8.0 Hz), 5.46 (d, 1H, J=8.5 Hz), 5.35-5.26 (m, 1H), 5.06 (br, 1H), 4.09 (br, 2H), 3.78-3.70 (br, 1H), 3.65 (dd, 1H, J=4.0, 9.2 Hz), 2.71 (br, 2H), 2.38-2.15 (m, 4H), 2.11-2.01 (m, 1H), 1.83-1.74 (m, 2H), 1.68-1.54 (m, 2H), 1.49-1.31 (m, 27H), 1.07 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.5, 172.3, 166.5, 155.4, 154.9, 81.4, 80.7, 79.8, 74.1, 62.8, 48.5, 45.4, 43.2, 31.4, 28.7, 28.7, 28.6, 28.5, 28.3, 27.5. Desired MS 676.40 (M+Na). MS Found (MALDI, m/z) 676.06 (M+Na).
  • Figure US20090264315A1-20091022-C00109
  • 1H NMR (500 MHz, CDCl3) δ 7.20 (d, 1H, J=7.6 Hz), 5.59 (d, 1H, J=8.5 Hz), 5.32-5.19 (m, 1H), 4.99 (br, 1H), 4.84 (br, 1H), 4.01 (br, 2H), 3.73-3.55 (m, 2H), 3.05-2.87 (m, 2H), 2.62 (br, 2H), 2.33-2.21 (m, 1H), 1.90-1.50 (m, 6H), 1.49-1.23 (m, 31H), 1.01 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.5, 166.9, 166.0, 156.0, 155.1, 154.4, 80.2, 79.3, 78.8, 73.7, 62.3, 48.1, 44.9, 42.6, 39.8, 33.0, 29.1, 28.5, 28.3, 28.2, 28.1, 28.0, 27.1, 22.1. Desired MS 697.44 (M+H). MS Found (MALDI, m/z) 697.13 (M+H).
  • Figure US20090264315A1-20091022-C00110
  • 1H NMR (300 MHz, CDCl3) δ 6.99-6.72 (m, 4H), 5.59-5.50 (m, 2H), 5.28-4.96 (m, 2H), 4.11 (br, 2H), 3.23-2.90 (m, 3H), 2.87-2.88 (m, 3H), 2.35-2.21 (m, 1H), 1.86-1.52 (m, 4H), 1.48-1.32 (m, 27H), 1.29 (s, 9H). 13C NMR (75 MHz, CDCl3) δ 174.0, 169.8, 169.7, 166.9, 166.8, 165.7, 154.6, 129.9, 129.8, 124.2, 82.3, 80.4, 79.6, 78.5, 48.4, 43.0, 42.2, 39.3, 37.6, 28.8, 28.4, 28.4, 28.3, 28.2, 28.0. Desired MS 738.42 (M+Na). MS Found (MALDI, m/z) 738.05 (M+Na).
  • Figure US20090264315A1-20091022-C00111
  • 1H NMR (500 MHz, CDCl3) δ 6.97 (d, 2H, J=8.3 Hz), 6.86 (d, 2H, J=8.3 Hz), 6.54-6.41 (br, 1H), 5.30-5.13 (m, 3H), 4.73 (t, 1H, J=5.7 Hz), 4.10 (br, 2H), 3.20-2.98 (m, 4H), 2.71 (br, 2H), 2.34-2.24 (m, 1H), 1.92-1.69 (m, 4H), 1.51-1.20 (m, 40H). 13C NMR (125 MHz, CDCl3) δ 174.4, 166.8, 156.2, 154.8, 154.6, 154.5, 130.1, 129.7, 124.3, 80.4, 79.6, 79.1, 78.5, 48.4, 45.2, 42.9, 39.9, 39.2, 33.1, 29.3, 28.8, 28.6, 28.4, 28.4, 28.3, 28.2, 22.2. Desired MS 795.47 (M+Na). MS Found (MALDI, m/z) 795.18 (M+Na).
  • Figure US20090264315A1-20091022-C00112
  • 1H NMR (500 MHz, CDCl3) δ 6.99 (d, 2H, J=8.3 Hz), 6.89 (d, 2H, J=8.3 Hz), 6.52 (d, 1H, J=7.6 Hz), 5.32-5.18 (m, 2H), 5.11 (d, 1H, J=8.4 Hz), 4.13 (br, 2H), 3.19 (dd, 1H, J=6.5, 14.0 Hz), 3.13 (dd, 1H, J=6.6, 14.0 Hz), 2.77 (br, 2H), 2.43-2.16 (m, 4H), 2.14-2.04 (m, 1H), 1.90-1.56 (m, 4H), 1.50-1.34 (m, 27H), 1.32 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.3, 172.2, 166.7, 166.3, 154.7, 154.6, 154.6, 130.0, 129.8, 124.3, 81.3, 80.4, 79.6, 78.5, 48.4, 45.3, 43.0, 39.2, 34.6, 31.2, 28.8, 28.5, 28.4, 28.3, 28.2, 28.0. Desired MS 752.43 (M+Na). MS Found (MALDI, m/z) 752.11 (M+Na).
  • Figure US20090264315A1-20091022-C00113
  • 1H NMR (500 MHz, CDCl3) δ 6.96 (d, 2H, J=8.4 Hz), 6.87 (d, 2H, J=8.4 Hz), 6.35 (d, 1H, J=8.3 Hz), 5.38 (dt, 1H, J=3.5, 8.4 Hz), 5.25-5.15 (m, 1H), 5.04 (d, 1H, J=8.3 Hz), 4.12 (br, 2H), 3.79 (dd, 1H, J=2.7, 9.2 Hz), 3.63 (dd, 1H, J=3.6, 9.2 Hz), 3.21-3.04 (m, 2H), 2.76 (t, 2H, J=12.2 Hz), 2.32 (tt, 1H, J=3.7, 11.5 Hz), 1.86-1.76 (m, 2H), 1.71-1.54 (m, 2H), 1.44 (s, 9H), 1.38 (s, 9H), 1.29 (s, 9H), 1.09 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.2, 166.6, 165.4, 154.7, 154.6, 154.5, 130.0, 129.8, 124.2, 80.4, 79.6, 78.5, 73.9, 62.1, 48.3, 46.5, 43.0, 39.2, 28.8, 28.5, 28.4, 28.3, 28.2, 27.3. Desired MS 710.42 (M+Na). MS Found (MALDI, m/z) 710.07 (M+Na).
  • Figure US20090264315A1-20091022-C00114
  • 1H NMR (500 MHz, CDCl3) δ 6.61 (t, 1H, J=5.4 Hz), 5.48 (d, 1H, J=8.6 Hz), 5.07-4.99 (m, 1H), 4.62 (d, 2H, J=5.4 Hz), 3.76 (dd, 1H, J=3.2, 9.3 Hz), 3.66 (dd, 1H, J=4.0, 9.3 Hz), 2.71 (br, 2H), 2.32 (tt, 1H, J=3.7, 11.5 Hz), 1.84-1.74 (m, 2H), 1.69-1.57 (m, 2H), 1.41 (s, 18H), 1.07 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.6, 166.4, 163.8, 155.2, 154.6, 80.4, 79.6, 73.9, 62.2, 48.2, 42.8, 34.4, 28.4, 28.2, 27.2. Desired MS 548.32 (M+Na). MS Found (MALDI, m/z) 547.84 (M+Na).
  • Figure US20090264315A1-20091022-C00115
  • 1H NMR (500 MHz, CDCl3) δ 6.47 (d, 1H, J=8.5 Hz), 5.49 (d, 1H, J=9.5 Hz), 5.33-5.22 (m, 1H), 4.86 (dd, 1H, J=1.7, 9.5 Hz), 4.70-4.60 (m, 1H), 4.22-3.96 (m, 3H), 3.13-2.98 (m, 2H), 2.70 (br, 2H), 2.29 (tt, 1H, J=3.7, 11.5 Hz), 1.98-1.86 (m, 2H), 1.85-1.71 (m, 2H), 1.69-1.55 (m, 2H), 1.54-1.21 (m, 31H), 1.22 (d, 3H, J=6.2 Hz), 0.92 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.2, 166.6, 166.5, 156.1, 155.7, 154.6, 80.3, 79.6, 79.1, 74.4, 68.1, 53.3, 45.1, 42.9, 39.9, 33.2, 29.3, 28.7, 28.5, 28.4, 28.4, 28.3, 28.0, 22.3, 20.1. Desired MS 711.46 (M+H). MS Found (MALDI, m/z) 711.03 (M+H).
  • Figure US20090264315A1-20091022-C00116
  • 1H NMR (500 MHz, CDCl3) δ 6.65 (d, 1H, J=7.2 Hz), 5.36 (d, 1H, J=7.8 Hz), 5.30-5.21 (m, 1H), 4.93 (br, 1H), 4.69 (br, 1H), 4.08 (br, 2H), 3.13-2.99 (m, 2H), 2.70 (br, 2H), 2.32 (tt, 1H, J=3.7, 11.5 Hz), 1.99-1.70 (m, 5H), 1.69-1.55 (m, 2H), 1.54-1.29 (m, 32H), 1.19-1.07 (m, 1H), 0.91-0.80 (m, 6H). 13C NMR (125 MHz, CDCl3) δ 174.3, 167.2, 166.3, 156.1, 155.1, 154.6, 80.3, 79.6, 79.1, 49.7, 47.0, 42.9, 39.9, 38.7, 33.1, 29.4, 28.7, 28.4, 28.3, 28.2, 28.1, 25.0, 22.3, 15.1, 11.3. Desired MS 667.43 (M+H). MS Found (MALDI, m/z) 667.04 (M+H).
  • Figure US20090264315A1-20091022-C00117
  • 1H NMR (500 MHz, CDCl3) δ 6.91 (d, 1H, J=8.8 Hz), 5.55 (dt, 1H, J=5.0, 8.8 Hz), 4.16-3.92 (m, 3H), 3.80-3.66 (m, 2H), 2.96 (ddd, 1H, J=1.5, 4.7, 16.6 Hz), 2.83 (dd, 1H, J=5.1, 16.6 Hz), 2.71 (br, 2H), 2.28 (tt, 1H, J=3.7, 11.5 Hz), 2.23 (s, 6H), 1.84-1.72 (m, 2H), 1.66-1.54 (m, 2H), 1.45-1.28 (m, 18H), 1.09 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 173.9, 169.6, 165.4, 165.0, 154.5, 82.1, 79.5, 73.4, 61.2, 61.0, 60.8, 42.9, 42.3, 42.3, 42.1, 37.7, 28.3, 27.9, 27.2. Desired MS 568.36 (M+H). MS Found (MALDI, m/z) 568.04 (M+H).
  • Figure US20090264315A1-20091022-C00118
  • 1H NMR (500 MHz, CDCl3) δ 6.74 (br, 1H), 5.32 (dt, 1H, J=4.9, 8.2 Hz), 4.20-3.90 (m, 3H), 3.82-3.67 (m, 2H), 2.70 (br, 2H), 2.37-2.15 (m, 10H), 2.13-2.01 (m, 1H), 1.78 (br, 2H), 1.67-1.54 (m, 2H), 1.42-1.35 (m, 18H), 1.09 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 174.2, 172.0, 166.2, 165.1, 154.5, 81.1, 79.5, 73.4, 61.2, 60.9, 45.3, 42.9, 42.2, 42.2, 31.1, 28.4, 28.3, 28.2, 28.0, 27.3. Desired MS 582.38 (M+H). MS Found (MALDI, m/z) 581.97 (M+H).
  • Figure US20090264315A1-20091022-C00119
  • 1H NMR (500 MHz, CDCl3) δ 6.96-6.75 (m, 4H), 6.36 (br, 1H), 5.65-5.51 (m, 1H), 4.20-3.88 (m, 3H), 3.86-3.66 (m, 2H), 3.21 (dd, 1H, J=5.8, 13.6 Hz), 3.08 (dd, 1H, J=5.7, 13.6 Hz), 2.66 (br, 2H), 2.30-2.16 (m, 7H), 1.75-1.61 (m, 2H), 1.60-1.46 (m, 2H), 1.40 (s, 9H), 1.26 (s, 9H), 1.12 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 173.8, 166.0, 165.1, 154.6, 154.5, 129.8, 129.5, 124.1, 79.5, 78.4, 73.5, 61.2, 61.0, 60.9, 46.5, 42.8, 42.2, 38.7, 38.6, 28.7, 28.3, 27.3. Desired MS 616.40 (M+H). MS Found (MALDI, m/z) 616.05 (M+H).
  • The following general method may be used to prepare protected monovalent compounds h″ through w″ and l′″ through y′″ (Scheme 11). Synthesis of protected monovalent compound o″ is demonstrated in Scheme 12 as a representative example.
  • Figure US20090264315A1-20091022-C00120
  • Figure US20090264315A1-20091022-C00121
  • The following general method may be used to prepare protected monovalent compounds x″ through k′″ (Scheme 13). Synthesis of protected monovalent compound i′″ is demonstrated in Scheme 14 as a representative example.
  • Figure US20090264315A1-20091022-C00122
  • Figure US20090264315A1-20091022-C00123
  • Characterization data for protected monovalent compounds h″ through y′″ follows:
  • Figure US20090264315A1-20091022-C00124
  • 1H NMR (500 MHz, CDCl3) δ 7.38 (s, 1H), 6.78-6.91 (m, 2H), 6.50-6.68 (m, 2H), 5.16-5.36 (m, 1H), 4.99 (s, 1H), 3.33-3.92 (m, 6H), 2.90-3.33 (m, 4H), 2.16-2.40 (m, 1H), 1.46 (s, 9H), 1.41 (s, 9H), 1.18-1.33 (m, 1H), 0.94 (t, J=6.6 Hz, 3H), 0.84-0.91 (m, 2H), 0.80 (d, J=6.3 Hz, 3H). 13C NMR (125 MHz, CDCl3) δ 166.4, 154.8, 152.7, 148.1, 130.6, 130.4, 128.6, 120.1, 115.3, 80.8, 79.8, 63.6, 48.6, 42.2, 40.5, 29.7, 28.4, 28.3, 24.3, 15.8, 10.4. MS (ESI) for C30H47N6O6 [M+H]+ calcd 587.73, found 587.33.
  • Figure US20090264315A1-20091022-C00125
  • 1H NMR (500 MHz, CDCl3) δ 7.75 (s, 1H), 5.38 (d, J=10.5 Hz, 1H), 4.94-5.03 (m, 1H), 4.82-4.92 (m, 1H), 3.66-3.78 (m, 2H), 3.55-3.66 (b, 1H), 3.43-3.55 (m, 3H), 3.20-3.32 (b, 1H), 3.00-3.22 (b, 1H), 2.32-2.42 (m, 1H), 1.74 (t, J=7.5 Hz, 2H), 1.52-1.66 (m, 1H), 1.46 (s, 9H), 1.41 (s, 9H), 0.90-1.06 (m, 2H), 1.00 (d, J=6.5 Hz, 3H), 0.93 (d, J=6.5 Hz, 6H), 0.82 (t, J=7.5 Hz, 3H). 13C NMR (125 MHz, CDCl3) δ 166.8, 155.5, 154.6, 150.0, 120.1, 80.8, 79.7, 63.7, 46.3, 45.6, 44.5, 42.5, 38.1, 28.6, 25.0, 24.7, 23.0, 22.5, 16.0, 10.7. MS (ESI) for C27H49N6O5 [M+H]+ calcd 537.38, found 537.38.
  • Figure US20090264315A1-20091022-C00126
  • 1H NMR (500 MHz, CDCl3) δ 8.39 (s, 1H), 7.95 (s, 1H), 7.60 (d, J=8 Hz, 1H), 7.37 (d, J=8 Hz, 1H), 7.21-7.24 (m, 1H), 7.15-7.18 (m, 1H), 6.99 (d, J=2 Hz, 1H), 6.02 (t, J=5 Hz, 1H), 5.07 (d, J=8 Hz, 1H), 4.93 (d, J=8 Hz, 1H), 3.70 (dd, J=4.5, 9 Hz, 1H), 3.48-3.56 (m, 1H), 3.26-3.44 (m, 4H), 3.06-3.14 (b, 1H), 2.82-3.06 (b, 1H), 2.36-2.58 (b, 1H), 1.88-2.05 (b, 1H), 1.76 (t, J=7.5 Hz, 2H), 1.62 (m, 1H), 1.45 (s, 9H), 1.41 (s, 9H), 0.96 (d, J=6.5 Hz, 6H). 13C NMR (125 MHz, CDCl3) δ 167.0, 155.5, 154.5, 149.8, 136.3, 127.1, 123.6, 122.8, 120.6, 120.3, 118.5, 111.8, 109.3, 80.6, 79.7, 59.4, 46.0, 45.6, 44.9, 42.4, 30.3, 28.6, 28.5, 25.0, 22.9, 22.5. MS (ESI) for C32H48N7O5 [M+H]+ calcd 610.37, found 610.37.
  • Figure US20090264315A1-20091022-C00127
  • 1H NMR (500 MHz, CDCl3) δ 7.70 (s, 1H), 5.65 (t, J=8 Hz, 1H), 5.05-5.15 (m, 1H), 4.82-4.97 (m, 1H), 4.56 (s, 1H), 3.68-3.80 (b, 1H), 3.61-3.68 (m, 1H), 3.38-3.60 (m, 4H), 3.20-3.32 (b, 1H), 2.98-3.19 (m, 3H), 2.15-2.24 (m, 1H), 1.86-2.10 (m, 2H), 1.76 (t, J=7.5 Hz, 2H), 1.54-1.68 (m, 1H), 1.46 (s, 9H), 1.44 (s, 9H), 1.43 (s, 9H), 1.22-1.35 (m, 1H), 1.16-1.22 (m, 1H), 0.94 (d, J=6.5 Hz, 6H)13C NMR (125 MHz, CDCl3) δ 166.5, 156.3, 155.5, 154.6, 150.0, 120.1, 80.8, 79.7, 79.5, 59.7, 46.0, 45.6, 42.6, 40.0, 32.7, 29.7, 28.7, 28.6, 28.5, 25.1, 22.9, 22.8, 22.5. MS (ESI) for C32H58N7O7 [M+H]+ calcd 652.44, found 652.44.
  • Figure US20090264315A1-20091022-C00128
  • 1H NMR (500 MHz, CDCl3) δ 7.75 (s, 1H), 5.80-5.95 (m, 1H), 5.05 (d, J=8 Hz, 1H), 4.80-4.95 (m, 1H), 3.59-3.74 (b, 3H), 3.42-3.58 (m, 3H), 3.27-3.35 (m, 1H), 3.10-3.27 (b, 1H), 2.30-2.40 (m, 1H), 2.05-2.28 (m, 2H), 1.93-2.07 (m, 1H), 1.75 (t, J=7.5 Hz, 2H), 1.52-1.68 (m, 1H), 1.46 (s, 9H), 1.44 (s, 9H), 1.42 (s, 9H), 0.93 (d, J=7 Hz, 6H). 13C NMR (125 MHz, CDCl3) δ 171.7, 166.6, 155.5, 154.6, 150.0, 120.4, 81.5, 80.7, 79.7, 58.7, 45.9, 45.6, 44.8, 42.5, 30.4, 28.6, 28.6, 28.3, 25.0, 22.9, 22.5. MS (ESI) for C32H53N6O7 [M+H]+ calcd 609.40, found 609.40.
  • Figure US20090264315A1-20091022-C00129
  • 1H NMR (500 MHz, CDCl3) δ 7.85 (s, 1H), 6.99 (d, J=8.5 Hz, 2H), 6.76 (d, J=8 Hz, 2H), 5.80-5.90 (b, 1H), 5.09 (d, J=8.5 Hz, 1H), 4.90 (d, J=6.5 Hz, 1H), 3.46-3.62 (b, 2H), 3.18-3.46 (m, 5H), 3.02-3.18 (m, 2H), 2.86-3.00 (b, 1H), 1.68-1.82 (m, 2H), 1.52-1.68 (m, 1H), 1.45 (s, 9H), 1.44 (s, 9H), 0.94 (d, J=6.5 Hz, 6H). 13C NMR (125 MHz, CDCl3) δ 166.4, 156.1, 154.5, 149.8, 130.7, 125.9, 120.7, 116.1, 80.9, 79.9, 60.4, 46.0, 45.5, 44.7, 42.5, 39.3, 28.6, 28.5, 25.0, 22.9, 22.5. MS (ESI) for C30H47N6O6 [M+H]+ calcd 587.36, found 587.35.
  • Figure US20090264315A1-20091022-C00130
  • 1H NMR (500 MHz, CDCl3) δ 8.77 (s, 1H), 7.86 (s, 1H), 7.56 (d, J=7.8 Hz, 1H), 7.32 (d, J=8.1 Hz, 1H), 7.09-7.30 (m, 2H), 6.94 (s, 1H), 5.95-6.05 (b, 1H), 5.42 (d, J=8.4 Hz, 1H), 4.77 (t, J=7.2 Hz, 1H), 3.61-3.78 (m, 2H), 3.08-3.59 (m, 5H), 2.72-3.09 (m, 3H), 2.20-2.60 (b, 1H), 1.84-2.04 (b, 1H), 1.42 (s, 9H), 1.38 (s, 9H), 0.99-1.25 (m, 2H), 0.84-0.99 (m, 3H), 0.75-0.83 (m, 3H). 13C NMR (125 MHz, CDCl3) δ 166.6, 155.4, 154.1, 147.4, 136.0, 126.8, 123.4, 122.4, 120.7, 119.8, 118.1, 111.5, 108.7, 80.3, 79.4, 59.1, 51.5, 45.6, 42.0, 39.3, 30.0, 28.3, 28.2, 25.2, 15.1, 11.4. MS (ESI) for C32H47N7O5 [M+H]+ calcd 610.37, found 610.35.
  • Figure US20090264315A1-20091022-C00131
  • 1H NMR (500 MHz, CDCl3) δ 7.57 (s, 1H), 5.55-5.60 (m, 1H), 5.32 (d, J=8.7 Hz, 1H), 4.67-4.70 (m, 1H), 4.48-4.60 (b, 1H), 3.26-3.78 (m, 7H), 2.83-3.25 (m, 4H), 1.78-2.20 (m, 4H), 1.38 (s, 18H), 1.36 (s, 9H), 1.12-1.28 (m, 2H), 0.92-1.12 (m, 2H), 0.84 (t, J=7.2 Hz, 3H), 0.74 (d, J=6.6 Hz, 3H). 13C NMR (125 MHz, CDCl3) δ 166.2, 156.0, 155.4, 154.3, 147.9, 120.0, 80.5, 79.4, 79.2, 59.3, 51.5, 45.6, 42.3, 39.7, 39.3, 32.4, 29.4, 28.3, 28.3, 28.2, 25.3, 22.5, 15.1, 11.5. MS (ESI) for C32H58N7O7 [M+H]+ calcd 652.44, found 652.45.
  • Figure US20090264315A1-20091022-C00132
  • 1H NMR (500 MHz, CDCl3) δ 7.63 (s, 1H), 5.78-5.90 (b, 1H), 5.37 (d, J=8.4 Hz, 1H), 4.59-4.73 (b, 1H), 3.54-3.78 (b, 3H), 3.32-3.53 (m, 3H), 3.00-3.32 (m, 2H), 2.23-2.40 (m, 1H), 2.04-2.22 (m, 3H), 1.75-2.04 (m, 2H), 1.40 (s, 9H), 1.38 (s, 9H), 1.37 (s, 9H), 0.93-1.13 (m, 1H), 0.85 (t, J=7.2 Hz, 3H), 0.75 (d, J=6.6 Hz, 3H). 13C NMR (125 MHz, CDCl3) δ 171.4, 166.1, 155.3, 154.2, 147.5, 120.4, 81.1, 80.3, 79.2, 58.3, 51.4, 45.5, 43.3, 42.2, 39.2, 30.0, 28.2, 28.1, 27.9, 25.2, 15.0, 11.4. MS (ESI) for C30H53N5O7 [M+H]+ calcd 609.40, found 609.39.
  • Figure US20090264315A1-20091022-C00133
  • 1H NMR (500 MHz, CDCl3) δ 7.75 (s, 1H), 6.92 (d, J=7.8 Hz, 2H), 6.72 (d, J=8.1 Hz, 2H), 5.75-5.87 (b, 1H), 5.37 (d, J=8.7 Hz, 1H), 4.71 (t, J=7.5 Hz, 1H), 3.42-3.59 (b, 2H), 2.98-3.42 (m, 7H), 2.78-2.98 (b, 1H), 1.78-2.00 (b, 2H), 1.40 (s, 9H), 1.39 (s, 9H), 0.97-1.16 (m, 2H), 0.87 (t, J=7.2 Hz, 3H), 0.77 (d, J=6.6 Hz, 3H). 13C NMR (125 MHz, CDCl3) δ 166.1, 156.0, 155.6, 154.3, 147.9, 130.3, 125.9, 120.9, 115.9, 80.6, 79.6, 60.1, 51.5, 45.7, 42.2, 39.2, 30.9, 28.3, 28.2, 25.2, 15.2, 11.4. MS (ESI) for C30H47N6O6 [M+H]+ calcd 587.36, found 587.32.
  • Figure US20090264315A1-20091022-C00134
  • 1H NMR (500 MHz, CDCl3) δ 10.58 (s, 1H), 8.18 (s, 1H), 7.57 (d, J=8 Hz, 1H), 7.37 (d, J=8.5 Hz, 1H), 7.11-7.18 (m, 2H), 7.07 (t, J=7 Hz, 2H), 6.14 (dd, J=3.5, 10 Hz, 1H), 3.71-3.87 (m, 3H), 3.48-3.63 (m, 2H), 3.13-3.36 (m, 7H), 3.05-3.13 (m, 1H), 2.58-2.68 (m, 1H), 2.04-2.20 (b, 1H), 1.46 (s, 9H), 1.41 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 166.9, 155.9, 154.5, 147.4, 136.1, 127.1, 123.5, 122.8, 121.94, 120.3, 118.3, 111.8, 109.0, 80.7, 80.2, 65.2, 59.6, 48.6, 46.0, 42.4, 30.2, 28.6, 28.5. MS (ESI) for C29H42N7O6 [M+H]+ calcd 584.32, found 584.32.
  • Figure US20090264315A1-20091022-C00135
  • 1H NMR (500 MHz, CDCl3) δ 7.86 (s, 1H), 5.45-5.81 (m, 2H), 4.92 (s, 1H), 4.60 (s, 1H), 4.12 (s, 1H), 3.91 (s, 1H), 3.41-3.80 (m, 6H), 2.93-3.41 (m, 5H), 2.37-2.86 (b, 2H), 2.18 (s, 1H), 2.05 (s, 1H), 1.46 (s, 9H), 1.44 (s, 9H), 1.43 (s, 9H), 1.08-1.37 (m, 2H). 13C NMR (125 MHz, CDCl3) δ 166.5, 156.3, 155.9, 154.6, 147.7, 121.5, 80.8, 80.2, 79.5, 65.3, 59.8, 48.7, 46.1, 42.6, 40.0, 32.7, 29.6, 28.7, 28.6, 28.5, 22.8. MS (ESI) for C29H52N7O8 [M+H]+ calcd 626.39, found 626.38.
  • Figure US20090264315A1-20091022-C00136
  • 1H NMR (500 MHz, CDCl3) δ 7.88 (s, 1H), 5.90 (q, J=4.5 Hz, 1H), 5.48-5.69 (m, 1H), 4.92 (s, 1H), 4.01-4.18 (m, 1H), 3.85-3.96 (m, 1H), 3.59-3.78 (b, 3H), 3.41-3.59 (m, 3H), 3.21-3.41 (m, 2H), 2.56-3.16 (b, 1H), 2.30-2.43 (m, 1H), 2.16-2.29 (m, 2H), 1.96-2.10 (m, 1H), 1.46 (s, 9H), 1.44 (s, 18H). 13C NMR (125 MHz, CDCl3) δ 171.7, 166.5, 155.9, 154.6, 147.6, 121.7, 155.9, 154.6, 147.6, 81.6, 80.8, 80.2, 65.3, 58.8, 45.9, 42.6, 30.4, 28.6, 28.3. MS (ESI) for C27H47N6O8 [M+H]+ calcd 583.35, found 583.31.
  • Figure US20090264315A1-20091022-C00137
  • 1H NMR (500 MHz, CDCl3) δ 7.96 (s, 1H), 5.23-5.78 (m, 2H), 4.78-5.05 (b, 1H), 4.0-4.26 (m, 1H), 3.80-4.00 (m, 1H), 3.60-3.78 (b, 3H), 3.40-3.60 (m, 3H), 3.19-3.40 (m, 1H), 3.13-3.19 (b, 1H), 2.44-2.86 (b, 2H), 1.46 (s, 9H), 1.44 (s, 9H), 0.89-1.35 (m, 5H), 0.83 (q, J=6 Hz, 3H). 13C NMR (125 MHz, CDCl3) δ 166.8, 155.9, 154.6, 147.7, 121.5, 80.8, 80.2, 65.3, 63.6, 48.6, 46.4, 42.5, 38.2, 28.6, 28.5, 24.8, 15.9, 10.7. MS (ESI) for C24H43N6O6 [M+H]+ calcd 511.33, found 511.32.
  • Figure US20090264315A1-20091022-C00138
  • 1H NMR (500 MHz, CDCl3) δ 7.35 (s, 1H), 6.78-6.92 (m, 2H), 6.56-6.72 (m, 2H), 5.72-5.85 (b, 1H), 5.24-5.44 (m, 1H), 4.90-5.08 (m, 1H), 3.31-3.78 (b, 7H), 3.09-3.26 (m, 2H), 2.84-3.09 (m, 2H), 2.21-2.40 (m, 1H), 2.02-2.20 (m, 2H), 1.45 (s, 9H), 1.41 (s, 9H), 1.39 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 171.6, 166.1, 155.1, 154.4, 148.1, 130.5, 128.3, 120.3, 115.3, 81.4, 80.7, 79.7, 58.3, 48.6, 48.5, 45.3, 42.1, 41.0, 40.7, 30.1, 28.3, 28.0, 27.9. MS (ESI) for C33H51N6O8 [M+H]+ calcd 659.38, found 659.34.
  • Figure US20090264315A1-20091022-C00139
  • 1H NMR (500 MHz, CDCl3) δ 8.57 (s, 1H), 7.40-7.62 (m, 2H), 7.27-7.36 (m, 1H), 7.03-7.21 (m, 2H), 6.80-6.94 (m, 2H), 6.77 (s, 1H), 6.3 (d, J=8.4 Hz, 2H), 5.77-5.97 (b, 1H), 5.24-5.46 (m, 1H), 4.96-5.12 (m, 1H), 2.81-3.68 (m, 12H), 1.42 (s, 9H), 1.41 (s, 9H). 13C NMR (125 MHz, CDCl3) δ 166.2, 155.2, 154.9, 148.0, 137.9, 136.0, 130.5, 128.6, 126.8, 123.5, 122.4, 120.3, 119.9, 118.0, 111.5, 108.8, 80.8, 79.8, 59.4, 48.6, 45.4, 42.1, 40.6, 29.5, 28.3. MS (ESI) for C35H46N7O6 [M+H]+ calcd 660.35, found 660.34.
  • Figure US20090264315A1-20091022-C00140
  • 1H NMR (CDCl3) δ 7.57 (s, 1H), 6.31 (s, 1H), 5.01 (s, 1H), 4.14 (m, 1H), 3.56 (t, 2H, J=4.5, J=5.7), 3.44 (s, 4H), 3.40 (t, 2H, J=5.7, J=4.8), 3.23 (q, 2H, J=6.6, J=6.3, J=6.9), 2.95 (s, 1H), 2.91 (dd, 1H, J=3.9, J=11.1, J=3.6), 2.80 (dd, 1H, J=7.1, J=6.9, J=8.1), 2.32 (t, 2H, J=7.5, J=7.8), 1.62 (m, 2H), 1.47 (s, 11H), 1.29-1.21 (m, 15H); HRMS (ESI, m/z): (M+H)+ calcd for C27H49N6O5 537.3759, found 537.3538.
  • Figure US20090264315A1-20091022-C00141
  • 1H NMR (CDCl3) δ 7.69 (s, 1H), 7.06 (t, 1H, J=5.4, J=5.7), 5.28 (t, 1H, J=5.1, J=5.7), 4.37 (t, 1H, J=6, J=6.3), 4.39-4.08 (m, 2H), 3.53 (t, 2H, J=4.5, J=5.7), 3.40 (s, 4H), 3.35 (t, 2H, J=5.7, J=4.8), 3.18 (q, 2H, J=6.6, J=7.2, J=6.3), 2.77 (t, 2H, J=7.5, J=7.8), 2.50 (t, 1H, J=6.9, J=7.5), 2.27 (t, 2H, J=7.5, J=7.8), 2.06 (s, 3H), 1.93 (p, 2H, J=7.5, J=7.5, J=7.2, J=7.2), 1.56 (m, 2H), 1.42 (s, 11H), 1.24 (br, 4H), 1.78 (br, 8H); 13C NMR (CDCl3) δ 172.2, 167.12, 154.8, 147.6, 122.0, 80.5, 77.0, 65.1, 63.0, 45.7, 41.6, 40.0, 33.8, 33.6, 29.6, 29.5, 29.4, 29.3, 29.3, 28.7, 28.6, 26.9, 25.4, 24.7, 15.6; HRMS (ESI, m/z): (M+H)+ calcd for C29H53N6O5S 597.3793, found 597.3770.
  • Figure US20090264315A1-20091022-C00142
  • 1H NMR (CDCl3) δ 7.60 (s, 1H), 6.79 (t, 1H, J=5.4, J=5.4), 5.11 (t, 1H, J=7.8, J=6.9), 4.75 (s, 1H), 3.59 (t, 2H, J=4.5, J=5.7), 3.45 (s, 4H), 3.40 (t, 2H, J=6.0, J=4.5), 3.20 (q, 2H, J=6.6, J=7.2, J=6.3), 3.07 (m, 2H), 2.18 (t, 2H, J=7.2, J=7.2), 2.40 (br, 2H), 2.34 (t, 2H, J=7.5, J=7.8), 2.21-2.15 (br, 2H), 2.03 (p, 2H, J=7.2, J=6.9, J=6.9, J=7.2), 1.60 (m, 2H), 1.55-1.46 (m, 11H), 1.42 (s, 9H), 1.28-1.25 (m, 4H), 1.22 (br, 12H); 13C NMR (CDCl3) δ 176.16, 172.55, 168.39, 156.46, 154.86, 147.40, 121.53, 80.64, 79.51, 64.45, 45.71, 41.63, 40.22, 40.04, 33.56, 33.51, 33.79, 29.57, 29.51, 29.32, 28.64, 28.60, 26.95, 25.51, 25.04, 24.52, 23.06; HRMS (ESI, m/z): (M+H)+ calcd for C37H66N7O8 736.4967, found 736.4785.
  • Figure US20090264315A1-20091022-C00143
  • 1H NMR (CDCl3) δ 7.54 (s, 1H), 6.74 (s, 1H), 5.09 (q, 1H, J=6.0, J=3.6, J=5.7), 4.66 (s, 1H), 3.60 (t, 2H, J=4.8, J=5.4), 3.45 (s, 4H), 3.41 (t, 2H, J=5.4, J=5.1), 3.21 (q, 2H, J=6.6, J=6.9, J=6.6), 3.06 (m, 2H), 2.37 (s, 3H), 2.33 (t, 2H, J=9.9, J=7.8), 2.29-2.05 (m, 2H), 1.62 (m, 2H), 1.51 (m, 2H), 1.48 (s, 9H), 1.44 (s, 9H), 1.30 (br, 6H), 1.23 (br, 10H); HRMS (ESI, m/z): (M+H)+ calcd for C34H62N7O6 664.4756, found 664.24.
  • Figure US20090264315A1-20091022-C00144
  • 1H NMR (CDCl3) δ 7.70 (s, 1H), 7.27 (s, 1H), 5.15 (t, 1H, J=8.7, J=6.6), 4.88 (s, 1H), 3.85 (t, 2H, J=6, J=6.3), 3.53 (t, 2H, J=4.5, J=5.7), 3.39 (s, 4H), 3.34 (t, 2H, J=5.4, J=4.8), 3.14 (m, 2H), 2.998 (q, 2H, J=6.3, J=6.6, J=6.9), 2.90 (t, 2H, J=6.0, J=6.3), 2.28 (t, 2H, J=7.2, J=8.1), 2.16-2.02 (m, 2H), 1.53 (m, 2H), 1.42 (m, 11H), 1.37 (s, 9H), 1.23 (br, 4H), 1.18 (br, 12H); HRMS (ESI, m/z): (M+H)+ calcd for C35H64N7O7 694.4862, found 694.4270.
  • Figure US20090264315A1-20091022-C00145
  • 1H NMR (CDCl3) δ 7.48 (s, 1H), 6.69 (s, 1H), 5.06 (q, 1H, J=6.0, J=3.3, J=6.0), 4.62 (s, 1H), 3.58 (t, 2H, J=4.5, J=5.4), 3.43 (s, 4H), 3.39 (t, 2H, J=5.4, J=4.8), 3.19 (q, 2H, J=6.3, J=7.2, J=6.3), 3.05 (m 2H), 2.71 (dd, 11H, J=5.7, J=8.7, J=6.0), 2.51 (dd, 1H, J=8.1, J=6.6, J=7.8), 2.32 (t, 2H, J=7.2, J=8.1), 2.370-2.10 (m, 2H), 1.73 (m, 2H), 1.50 (m, 2H), 1.46 (s, 9H), 1.42 (s, 2H), 1.37 (m, 2H), 1.33-1.26 (br, 6H), 1.26-1.12 (br, 10H), 2.90 (t, 3H, J=7.2, J=6.6), 0.87 (d, 3H, J=6.6); HRMS (ESI, m/z): (M+H)+ calcd for C38H70N7O6 720.5382, found 720.5566.
  • Figure US20090264315A1-20091022-C00146
  • 1H NMR (CDCl3) δ 11.43 (s, 1H), 8.40 (t, 1H, J=5.5, J=5.7), 7.58 (s, 1H), 6.83 (t, 1H, J=5.4, J=6.0), 5.29 (q, 1H, J=6.3, J=3.3, J=5.7), 3.46 (m, 2H), 3.43 (s, 4H), 3.39 (m, 2H), 3.25-4.14 (m, 2H), 2.71 (dd, 1H, J=6.3, J=8.4, J=5.7), 2.51 (dd, 1H, J=8.1, J=6.3, J=7.8), 2.31 (t, 2H, J=7.5, J=7.8), 2.33-2.10 (m, 2H), 1.73 (m, 1H), 1.60 (m, 2H), 1.49 (s, 22H), 1.46 (s, 9H), 1.27 (br, 4H), 1.22 (br, 10H), 0.89 (t, 3H, J=7.5, J=5.1), 0.87 (d, 3H, J=6.6); 13C NMR (CDCl3) δ 171.80, 167.98, 162.46, 156.12, 154.46, 153.00, 147.27, 121.14, 83.51, 80.16, 63.14, 45.30, 41.19, 39.66, 39.43, 34.78, 33.26, 32.57, 30.10, 29.29, 29.25, 29.21, 29.12, 29.00, 28.25, 28.13, 27.92, 26.82, 25.32, 25.15, 18.28, 11.29; HRMS (ESI, m/z): (M+H)+ calcd for C43H78N9O8 848.5968, found 848.7464.
  • Figure US20090264315A1-20091022-C00147
  • 1H NMR (500 MHz, DMSO-d6): δ=8.46 (t, J=5.5 Hz, 1H), 7.94 (s, 1H), 5.30 (m, 1H), 4.69 (t, J=, 1H), 3.64 (dd, 2H), 3.41-3.34 (m, 10H), 3.10-3.00 (m, 2H), 2.76 (t, J=, 2H), 2.29-2.26 (m, 6H), 2.03 (s, 3H), 1.40 (m, 11H), 1.22 (m, J=, 12H); 13C NMR (126 MHz, DMSO-d6): δ=171.48, 167.85, 154.46, 145.06, 122.06, 79.78, 62.23, 60.97, 55.60, 41.39, 40.68, 39.38, 32.98, 32.25, 29.91, 29.64, 29.59 29.57, 29.47, 29.36, 29.32, 28.70, 15.06. TOF MS calcd for C29H52N6O5S 596.83; found: 597.55.
  • Figure US20090264315A1-20091022-C00148
  • 1H NMR (500 MHz, DMSO-d6): δ=8.49 (t, J=5.5 Hz, 1H), 7.85 (s, 1H), 5.13 (d, J=6 Hz, 1H), 5.012 (d, J=6 Hz, 1H), 4.23 (m, 1H), 3.40-3.26 (m, 10H), 3.11-2.98 (m, 2H), 2.29 (t, J=7.5 Hz, 2H), 2.22 (s, 3H), 1.47 (m, 14H), 1.24 (m, 12H), 1.06 (d, J=6 Hz, 3H); 13C NMR (126 MHz, DMSO-d6): δ=171.46, 167.22, 154.45, 141.89, 122.34, 79.76, 69.77, 67.09, 45.31, 41.38, 39.26, 32.97, 29.61, 29.58, 29.56, 29.47, 29.34, 29.31, 28.69, 26.96, 25.42, 20.94, 11.26. TOF MS calcd for C27H48N6O5 536.71; found: 537.49.
  • Figure US20090264315A1-20091022-C00149
  • 1H NMR (500 MHz, DMSO-d6): δ=8.26 (t, J=5.5 Hz, 1H), 7.76 (s, 1H), 6.79 (t, J=6 Hz, 1H), 4.98 (s, 2H), 3.41-3.25 (m, 10H), 3.08 (q, J=7.5 Hz, 2H), 2.90 (q, J=6.5 Hz, 2H), 2.60 (t, J=7.5, 2H), 2.29 (t, J=7.5, 2H), 1.40-1.36 (m, 30H), 1.24 (m, 16H); 13C NMR (126 MHz, DMSO-d6): δ=171.46, 165.94, 156.22, 154.45, 147.19, 123.88, 79.76, 77.94, 55.60, 52.19, 45.31, 41.38, 39.39, 32.97, 29.92, 29.65, 29.62, 29.58, 29.47, 29.40, 29.37, 28.94, 28.69, 27.03, 26.58, 25.64, 25.42. TOF MS calcd for C34H61N7O6 663.89; found: 664.49.
  • Figure US20090264315A1-20091022-C00150
  • 1H NMR (500 MHz, DMSO-d6): δ=8.40 (t, J=5.5 Hz, 1H), 7.86 (s, 1H), 6.79 (t, J=6 Hz, 1H), 5.28-5.22 (m, 2H), 3.92 (t, J=6 Hz, 2H), 3.41-3.25 (m, 10H), 3.06 (q, J=7.5 Hz, 2H), 2.97 (q, J=7.5 Hz, 2H), 2.60 (t, J=6 Hz, 2H), 2.29 (t, J=6 Hz, 2H), 1.59 (m, 2H), 1.40 (m, 28H), 1.24 (m, 16H); 13C NMR (126 MHz, DMSO-d6): δ=171.47, 166.86, 156.22, 154.45, 147.04, 121.73, 79.76, 77.95, 65.45, 62.06, 45.31, 41.39, 39.36, 32.97, 29.92, 29.63, 29.60, 29.58, 29.47, 29.42, 29.34, 28.94, 28.69, 26.92, 26.67, 25.77, 25.43. TOF MS calcd for C35H63N7O7 693.92; found: 694.51.
  • Figure US20090264315A1-20091022-C00151
  • 1H NMR (500 MHz, DMSO-d6): δ=8.55 (t, J=5.5 Hz, 1H), 7.88 (s, 1H), 6.77 (t, J=6 Hz, 1H), 4.95 (d, J=11 Hz, 1H), 3.41-3.25 (m, 8H), 3.15-2.95 (m, 2H), 2.89 (q, J=7.5 Hz, 2H), 2.59 (t, J=6 Hz, 2H), 2.29 (t, J=6 Hz, 2H), 2.20 (m, 1H), 1.58 (m, 2H), 1.39 (m, 24H), 1.26 (m, 15H), 0.90 (d, J=6.5 Hz, 3H), 0.75 (t, J=7 Hz, 3H); 13C NMR (126 MHz, DMSO-d6): δ=171.45, 168.07, 156.21, 154.44, 147.57, 120.94, 95.00, 79.75, 77.92, 67.75, 45.31, 41.38, 39.18, 37.17, 32.97, 29.85, 29.62, 29.56, 29.46, 29.32, 29.28, 28.93, 28.68, 26.94, 26.60, 25.73, 25.42, 24.96, 15.65, 10.53. TOF MS calcd for C38H69N7O8 720.00; found: 720.58.
  • Figure US20090264315A1-20091022-C00152
  • 1H NMR (500 MHz, DMSO-d6): δ=11.50 (s, 1H), 8.54 (t, J=5.5 Hz, 1H), 8.30 (t, J=5.5 Hz, 1H), 7.90 (s, 1H), 4.96 (d, J=11 Hz, 1H), 3.40-3.25 (m, 10H), 3.16 (m, 1H), 3.10 (m, 1H), 2.64 (t, J=6 Hz, 2H), 2.29 (t, J=6 Hz, 2H), 2.19 (m, 1H), 1.60 (m, 2H), 1.51 (m, 15H), 1.39 (m, 22H), 1.20 (m, 12H), 0.95 (d, J=6.5 Hz, 3H), 0.75 (t, J=7 Hz, 3H); 13C NMR (126 MHz, DMSO-d6): δ=171.44, 168.04, 163.81, 155.89, 154.44, 152.76, 147.36, 121.05, 83.50, 79.75, 78.72, 67.75, 55.59, 45.31, 41.38, 39.17, 37.20, 32.97, 29.61, 29.55, 29.46, 29.32, 29.26, 28.83, 28.68, 28.65, 28.27, 26.92, 25.41, 25.35, 24.96, 15.65, 10.52. TOF MS calcd for C43H77N9O8 848.13; found: 848.57.
  • Figure US20090264315A1-20091022-C00153
  • 1H NMR (500 MHz, DMSO-d6): δ=8.42 (t, J=5.5 Hz, 1H), 7.88 (s, 1H), 6.78 (t, J=6 Hz, 1H), 5.19 (t, J=8 Hz, 1H), 3.40-3.25 (m, 8H), 3.11-2.99 (m, 2H), 2.90 (q, J=6.5 Hz, 2H), 2.59 (t, J=6 Hz, 2H), 2.29-2.04 (m, 6H), 1.58 (m, 2H), 1.39 (m, 37H), 1.21 (m, 14H); 13C NMR (126 MHz, DMSO-d6): δ=171.52, 171.45, 167.82, 156.20, 154.44, 147.55, 121.35, 80.69, 79.75, 77.92, 62.48, 45.31, 41.38, 39.31, 32.97, 31.51, 29.88, 29.67, 29.60, 29.58, 29.46, 29.33, 29.27, 28.93, 28.68, 28.36, 28.00, 26.91, 26.62, 25.73, 25.42. TOF MS calcd for C41H73N7O8 792.06; found: 792.64.
  • Figure US20090264315A1-20091022-C00154
  • 13C NMR (75 MHz, CDCl3) δ: 166.6, 156.4, 156.1, 154.6, 146.3, 121.0, 80.8, 80.0, 79.5, 59.7, 46.0, 42.6, 40.0, 36.6, 32.7, 29.7, 28.7, 28.6, 22.9. MS (MALDI) calculated [M+H]: 596.37, found: 596.03.
  • Figure US20090264315A1-20091022-C00155
  • 13C NMR (75 MHz, CDCl3) δ: 166.2, 163.6, 156.5, 155.6, 154.5, 153.4, 120.2, 83.5, 80.6, 79.6, 58.9, 51.8, 45.9, 43.6, 42.6, 39.6, 30.0, 28.5, 25.2, 25.4, 15.4, 11.7. MS (MALDI) calculated [M+H]: 780.49, found: 780.30.
  • Figure US20090264315A1-20091022-C00156
  • 13C NMR (75 MHz, CDCl3) δ: 171.2, 166.1, 155.9, 155.2, 154.1, 149.3, 120.0, 80.9, 80.1, 79.1, 87.5, 58.2, 46.9, 45.4, 42.1, 40.0, 34.9, 30.0, 29.3, 28.2 28.1, 27.8, 22.8.
  • MS (MALDI) calculated [M+H]: 724.45, found: 724.19.
  • Figure US20090264315A1-20091022-C00157
  • 13C NMR (75 MHz, CDCl3) δ: 171.4, 165.8, 155.9, 154.5, 148.5, 121.3, 80.7, 79.6, 56.2, 51.8, 46.0, 42.9, 39.3, 38.7, 28.6, 25.5, 25.5, 15.6, 11.6. MS (MALDI) calculated [M+H]: 538.33, found: 538.06.
  • Figure US20090264315A1-20091022-C00158
  • 13C NMR (75 MHz, CDCl3) δ: 169.9, 166.2, 156.2, 155.6, 154.4, 149.3, 144.5, 128.7, 127.0, 120.8, 80.5, 79.7, 79.1, 70.6, 68.0, 59.4, 45.7, 45.2, 42.4, 40.4, 39.8, 32.6, 29.4, 28.5, 25.7, 22.8. MS (MALDI) calculated [M+Na]: 917.49, found: 917.27.
  • Figure US20090264315A1-20091022-C00159
  • 13C NMR (75 MHz, CDCl3) δ: 171.5, 165.8, 156.0, 154.5, 148.7, 121.3, 80.6, 79.5, 56.2, 52.9, 45.9, 42.8, 38.7, 33.0, 28.5, 19.3, 18.7. MS (MALDI) calculated [M+H]: 524.31, 524.06.
  • Figure US20090264315A1-20091022-C00160
  • 13C NMR (75 MHz, CDCl3) δ: 171.2, 170.2, 168.0, 165.9, 155.7, 154.5, 144.7, 132.6, 131.2, 129.0, 128.9, 127.1, 121.8, 80.5, 79.8, 70.7, 68.4, 56.0, 42.7, 38.9, 38.4, 30.6, 29.1, 28.6.
  • MS (MALDI) calculated [M+Na]: 803.39, found: 803.19.
  • Figure US20090264315A1-20091022-C00161
  • 13C NMR (75 MHz, CDCl3) δ: 168.6, 165.4, 155.3, 154.4, 149.2, 120.1, 82.2, 80.5, 79.7, 55.5, 46.4, 45.9, 42.7, 38.7, 34.7, 30.5, 28.5, 28.4, 15.5. MS (MALDI) calculated [M+H]: 613.33, 613.40.
  • Figure US20090264315A1-20091022-C00162
  • 13C NMR (75 MHz, CDCl3) δ: 166.8, 156.4, 155.7, 154.5, 121.5, 80.9, 799, 79.3, 67.6, 63.1, 47.5, 45.9, 42.6, 40.5, 35.3, 29.8, 28.7, 28.6, 23.1, 18.9. MS (MALDI) calculated [M+H]: 640.40, found, 640.52.
  • Figure US20090264315A1-20091022-C00163
  • 13C NMR (75 MHz, CDCl3) δ: 168.9, 165.6, 154.6, 120.8, 82.5, 80.8, 55.7, 46.1, 44.0, 42.6, 38.9, 36.5, 28.7, 28.3. MS (MALDI) calculated [M+H]: 539.31, found 539.41.
  • Figure US20090264315A1-20091022-C00164
  • 13C NMR (75 MHz, CDCl3) δ: 165.8, 156.0, 154.6, 148.2, 121.6, 80.8, 79.7, 63.0, 60.7, 52.8, 45.9, 42.5, 33.1, 28.5, 19.2, 18.5. MS (MALDI) calculated [M+H]: 497.30, found: 497.44.
  • Figure US20090264315A1-20091022-C00165
  • 13C NMR (75 MHz, CDCl3) δ: 170.0, 168.8, 165.2, 155.6, 154.4, 149.9, 144.5, 128.8, 128.2, 127.1, 121.0, 120.7, 82.1, 800.4, 79.8, 70.7, 55.4, 45.8, 45.2, 42.7, 40.2, 38.7, 28.5, 28.2.
  • MS (MALDI) calculated [M+H]: 838.44, found: 838.58.
  • Figure US20090264315A1-20091022-C00166
  • 13C NMR (75 MHz, CDCl3) δ: 168.6, 165.3, 155.5, 154.3, 148.4, 120.1, 82.0, 80.4, 79.4, 55.6, 51.6, 45.8, 42.7, 39.2, 38.7, 28.4, 28.0, 25.3, 15.4, 11.6. MS (MALDI) calculated [M+H]: 595.37, found: 595.51.
  • Figure US20090264315A1-20091022-C00167
  • 13C NMR (75 MHz, CDCl3) δ: 168.5, 165.1, 155.2, 154.1, 120.4, 81.8, 80.1, 79.4, 73.1, 63.4, 55.5, 48.0, 45.6, 44.5, 42.5, 38.5, 28.8, 28.2, 27.9, 27.4. MS (MALDI) calculated [M+H]: 625.38, found: 625.45.
  • The following method may be used to prepare protected monovalent compound z′″ (Scheme 15).
  • Figure US20090264315A1-20091022-C00168
  • Characterization data for protected monovalent compound z′″ follows:
  • Figure US20090264315A1-20091022-C00169
  • 1H NMR (CDCl3, 300 MHz): δ 8.24-8.14 (m, 2H), 7.97-7.87 (s, 4H), 5.89-5.81 (m, 1H), 5.36-5.30 (m, 1H), 3.80-3.14 (m, 8H), 2.15-1.90 (m, 6H), 1.50-1.42 (s, 9H), 1.29-1.22 (m, 3H), 1.14-1.07 (m, 3H), 1.03-0.98 (m, 3H), 0.96-0.90 (m, 3H). Mass Spec (ESI) Calculated for [M+1]: 609.34, found: 609.35.
  • The following general method may be used to prepare protected monovalent compounds a″″ through b″″ (Scheme 16).
  • Figure US20090264315A1-20091022-C00170
    Figure US20090264315A1-20091022-C00171
  • Characterization data for protected monovalent compounds a″″ through b″″ follows:
  • Figure US20090264315A1-20091022-C00172
  • Calculated Mass: 568.25 found (ESI): 567.2421 (M−H).
  • Figure US20090264315A1-20091022-C00173
  • Calculated mass: 625.27; found (ESI): 624.2646 (M−H).
  • The following method may be used to prepare protected monovalent compounds c″″ through e″″ (Scheme 17).
  • Figure US20090264315A1-20091022-C00174
  • Characterization data for protected monovalent compounds c″″ through e″″ follows:
  • Figure US20090264315A1-20091022-C00175
  • Desired MS 604.30 (M+H). MS Found (MALDI, m/z) 604.34 (M+H).
  • Figure US20090264315A1-20091022-C00176
  • Desired MS 699.35 (M+H). MS Found (MALDI, m/z) 699.20 (M+H).
  • Figure US20090264315A1-20091022-C00177
  • Desired MS 787.46 (M+H). MS Found (ESI, m/z) 787.46 (M+H).
  • Example 2 Synthesis of Bivalent Compounds Having a Triazine Core
  • The protected monovalent compounds may be reacted with a 1,3,5-triazine moiety having a labeling tag attached. An exemplary but non-limiting general procedure for synthesizing the 1,3,5-triazine bivalent compounds follows: The protected monovalent compound was deprotected with TFA in CH2Cl2. The deprotected monovalent compound was dissolved in THF and reacted at room temperature with a dichlorotriazine derivative in the presence of K2CO3. In the example that follows, the dichlorotriazine derivative is labeled with a fluorescein tag (i.e., DTAF). The solvent was removed at reduced pressure, and the product was sufficiently pure to use without further purification. The crude product was redissolved in DMSO, and a second equivalent of a deprotected monovalent compound was reacted at room temperature in the presence of K2CO3. Following workup and purification, bivalent peptide mimics having a 1,3,5-triazine core and a labeling tag were obtained. Morpholine may also be used in the first or second coupling steps. A representative synthesis of the 1,3,5-triazine bivalent compounds is presented in Scheme 18.
  • Figure US20090264315A1-20091022-C00178
  • Example 3 Listing of Bivalent Triazine Compounds Prepared
  • Tables 1-7 provide listings of bivalent compounds prepared and experimental characterization of those compounds when available.
  • TABLE 1
    Bivalent Compounds from Monovalent Compounds a-o
    Monovalent HPLC Purity (%)
    Compound Tag UV 254 nm Sedex
    ap 1 100 100
    aa 1 100 100
    bp 1 93 100
    ba 1 86 100
    bb 1 91 100
    cp 1 100 100
    ca 1 86 92
    cb 1 85 92
    cc 1 100 100
    dp 1 85 92
    da 1 86 100
    db 1 92 100
    dc 1 90 100
    dd 1 92 100
    ep 1 86 90
    ea 1 92 94
    eb 1 100 100
    ec 1 94 100
    ed 1 100 100
    ee 1 100 100
    fp 1 100 100
    fa 1 100 100
    fb 1 90 100
    fc 1 100 100
    fd 1 91 100
    fe 1 89 100
    ff 1 100 94
    gp 1 88 98
    ga 1 86 92
    gb 1 100 100
    gc 1 96 98
    gd 1 87 00
    ge 1 94 100
    gf 1 96 100
    gg 1 86 100
    hp 1 98 100
    ha 1 89 93
    hb 1 93 100
    hc 1 93 100
    hd 1 93 100
    he 1 93 100
    hf 1 87 94
    hg 1 96 98
    hh 1 91 100
    ip 1 92 87
    ia 1 93 91
    ib 1 100 100
    ic 1 91 100
    id 1 90 100
    ie 1 100 100
    if 1 100 100
    ig 1 98 97
    ih 1 92 100
    ii 1 89 96
    jp 1 100 100
    ja 1 100 100
    jb 1 100 100
    jc 1 100 100
    jd 1 100 100
    je 1 100 100
    jf 1 100 100
    jg 1 96 100
    jh 1 96 100
    ji 1 100 100
    jj 1 100 100
    kp 1 94 99
    ka 1 90 95
    kb 1 100 100
    kc 1 94 100
    kd 1 100 100
    ke 1 100 100
    kf 1 86 93
    kg 1 93 90
    kh 1 100 100
    ki 1 100 100
    kj 1 100 100
    kk 1 86 100
    lp 1 87 100
    la 1 88 94
    lb 1 100 100
    lc 1 97 100
    ld 1 100 100
    le 1 100 100
    lf 1 87 100
    lg 1 100 100
    lh 1 100 100
    li 1 100 100
    lj 1 100 100
    lk 1 100 100
    ll 1 95 100
    mp 1 92 97
    ma 1 92 100
    mb 1 86 92
    mc 1 97 100
    md 1 100 100
    me 1 89 100
    mf 1 100 100
    mg 1 88 96
    mh 1 88 87
    mi 1 100 100
    mj 1 100 100
    mk 1 100 100
    ml 1 100 100
    mm 1 100 100
    np 1 100 100
    na 1 100 96
    nb 1 100 100
    nc 1 100 100
    nd 1 100 100
    ne 1 100 100
    nf 1 100 98
    ng 1 86 100
    nh 1 92 100
    ni 1 100 100
    nj 1 100 100
    nk 1 100 100
    nl 1 100 100
    nm 1 100 100
    nn 1 100 100
    op 1 100 100
    oa 1 100 93
    ob 1 87 93
    oc 1 100 100
    od 1 87 86
    oe 1 90 92
    of 1 100 100
    og 1 90 94
    oh 1 89 93
    oi 1 89 95
    oj 1 100 98
    ok 1 88 93
    ol 1 90 90
    om 1 100 100
    on 1 100 100
    oo 1 100 91
    ap 2 100 98
    aa 2 93 100
    bp 2 100 100
    ba 2 90 100
    bb 2 97 100
    cp 2 100 100
    ca 2 91 91
    cb 2 86 91
    cc 2 100 87
    dp 2 100 100
    da 2 100 100
    db 2 87 100
    dc 2 97 100
    dd 2 100 100
    ep 2 100 100
    ea 2 100 100
    eb 2 89 100
    ec 2 86 92
    ed 2 87 100
    ee 2 100 100
    fp 2 100 100
    fa 2 90 85
    fb 2 98 100
    fc 2 87 91
    fd 2 89 94
    fe 2 89 93
    ff 2 100 99
    gp 2 100 100
    ga 2 87 90
    gb 2 91 92
    gc 2 89 94
    gd 2 89 100
    ge 2 85 89
    gf 2 100 100
    gg 2 89 97
    hp 2 89 87
    ha 2 89 91
    hb 2 90 87
    hc 2 88 91
    hd 2 92 89
    he 2 89 90
    hf 2 100 100
    hg 2 100 100
    hh 2 87 89
    ip 2 100 100
    ia 2 95 100
    ib 2 98 100
    ic 2 97 96
    id 2 91 90
    ie 2 92 100
    if 2 96 92
    ig 2 100 92
    ih 2 93 91
    ii 2 91 95
    jp 2 100 97
    ja 2 100 88
    jb 2 95 100
    jc 2 93 100
    jd 2 87 91
    je 2 87 88
    jf 2 100 94
    jg 2 100 100
    jh 2 95 100
    ji 2 90 91
    jj 2 96 100
    kp 2 100 100
    ka 2 95 100
    kb 2 100 100
    kc 2 96 95
    kd 2 92 90
    ke 2 97 94
    kf 2 90 92
    kg 2 100 92
    kh 2 94 93
    ki 2 87 90
    kj 2 91 92
    kk 2 98 97
    lp 2 96 100
    la 2 99 100
    lb 2 90 88
    lc 2 88 86
    ld 2 86 85
    le 2 86 89
    lf 2 86 98
    lg 2 86 86
    lh 2 87 87
    li 2 89 86
    lj 2 88 85
    lk 2 87 88
    ll 2 91 96
    mp 2 100 100
    ma 2 86 86
    mb 2 100 100
    mc 2 86 100
    md 2 87 94
    me 2 96 100
    mf 2 86 85
    mg 2 90 90
    mh 2 89 88
    mi 2 100 100
    mj 2 89 95
    mk 2 94 100
    ml 2 92 92
    mm 2 91 89
    np 2 100 100
    na 2 89 100
    nb 2 85 100
    nc 2 93 90
    nd 2 92 100
    ne 2 90 95
    nf 2 100 92
    ng 2 85 90
    nh 2 97 88
    ni 2 87 94
    nj 2 87 92
    nk 2 85 87
    nl 2 87 86
    nm 2 86 100
    nn 2 96 96
    op 2 100 98
    oa 2 92 87
    ob 2 86 100
    oc 2 90 85
    od 2 100 100
    oe 2 85 100
    of 2 87 100
    og 2 85 92
    oh 2 88 93
    oi 2 95 100
    oj 2 100 100
    ok 2 94 100
    ol 2 94 100
    om 2 87 97
    on 2 91 85
    oo 2 90 92
    ap 3 76 100
    aa 3 95 100
    bp 3 70 92
    ba 3 88 96
    bb 3 80 93
    cp 3 75 94
    ca 3 80 96
    cb 3 83 95
    cc 3 93 93
    db 3 94 100
    da 3 80 95
    db 3 81 96
    dc 3 95 92
    dd 3 92 100
    ep 3 96 100
    ea 3 89 97
    eb 3 88 94
    ec 3 99 100
    ed 3 95 98
    ee 3 96 100
    fp 3 96 99
    fa 3 89 93
    fb 3 85 95
    fc 3 76 91
    fd 3 92 92
    fe 3 93 97
    ff 3 95 94
    gp 3 76 94
    ga 3 83 91
    gb 3 85 98
    gc 3 80 93
    gd 3 85 90
    ge 3 94 97
    gf 3 75 94
    gg 3 85 96
    hp 3 95 100
    ha 3 85 100
    hb 3 84 91
    hc 3 81 98
    hd 3 85 100
    he 3 86 94
    hf 3 85 96
    hg 3 80 100
    hh 3 80 90
    ip 3 93 100
    ia 3 85 94
    ib 3 95 100
    ic 3 93 100
    id 3 92 95
    ie 3 92 87
    if 3 87 100
    ig 3 93 95
    ih 3 95 100
    ii 3 90 88
    jp 3 96 100
    ja 3 91 94
    jb 3 91 95
    jc 3 91 94
    jd 3 92 100
    je 3 91 86
    jf 3 92 94
    jg 3 89 97
    jh 3 88 91
    ji 3 95 100
    jj 3 95 100
    kp 3 95 100
    ka 3 88 94
    kb 3 88 91
    kc 3 94 100
    kd 3 93 100
    ke 3 92 90
    kf 3 91 100
    kg 3 92 95
    kh 3 90 89
    ki 3 90 87
    kj 3 95 100
    kk 3 90 87
    lp 3 85 100
    la 3 85 100
    lb 3 87 92
    lc 3 87 95
    ld 3 85 97
    le 3 93 94
    lf 3 78 92
    lg 3 87 97
    lh 3 86 90
    li 3 92 90
    lj 3 87 90
    lk 3 93 94
    ll 3 85 93
    mp 3 98 100
    ma 3 93 96
    mb 3 81 100
    mc 3 74 100
    md 3 94 97
    me 3 93 94
    mf 3 96 98
    mg 3 93 100
    mh 3 82 97
    mi 3 90 91
    mj 3 95 100
    mk 3 91 97
    ml 3 89 94
    mm 3 98 99
    np 3 91 100
    na 3 78 95
    nb 3 82 95
    nc 3 77 90
    nd 3 90 93
    ne 3 94 96
    nf 3 96 100
    ng 3 78 94
    nh 3 78 94
    ni 3 95 100
    nj 3 91 94
    nk 3 89 91
    nl 3 81 94
    nm 3 94 95
    nn 3 95 100
    op 3 78 95
    oa 3 89 96
    ob 3 85 92
    oc 3 90 94
    od 3 86 97
    oe 3 85 91
    of 3 85 100
    og 3 85 94
    oh 3 92 97
    oi 3 95 100
    oj 3 91 91
    ok 3 93 98
    ol 3 85 94
    om 3 85 100
    on 3 95 100
    oo 3 86 92
    ap 4
    aa 4
    bp 4
    ba 4
    bb 4
    cp 4
    ca 4
    cb 4
    cc 4
    dp 4
    da 4
    db 4
    dc 4
    dd 4
    ep 4
    ea 4
    eb 4
    ec 4
    ed 4
    ee 4
    fp 4
    fa 4
    fb 4
    fc 4
    fd 4
    fe 4
    ff 4
    gp 4
    ga 4
    gb 4
    gc 4
    gd 4
    ge 4
    gf 4
    gg 4
    hp 4
    ha 4
    hb 4
    hc 4
    hd 4
    he 4
    hf 4
    hg 4
    hh 4
    ip 4
    ia 4
    ib 4
    ic 4
    id 4
    ie 4
    if 4
    ig 4
    ih 4
    ii 4
    jp 4
    ja 4
    jb 4
    jc 4
    jd 4
    je 4
    jf 4
    jg 4
    jh 4
    ji 4
    jj 4
    kp 4
    ka 4
    kb 4
    kc 4
    kd 4
    ke 4
    kf 4
    kg 4
    kh 4
    ki 4
    kj 4
    kk 4
    lp 4
    la 4
    lb 4
    lc 4
    ld 4
    le 4
    lf 4
    lg 4
    lh 4
    li 4
    lj 4
    lk 4
    ll 4
    mp 4
    ma 4
    mb 4
    mc 4
    md 4
    me 4
    mf 4
    mg 4
    mh 4
    mi 4
    mj 4
    mk 4
    ml 4
    mm 4
    np 4
    na 4
    nb 4
    nc 4
    nd 4
    ne 4
    nf 4
    ng 4
    nh 4
    ni 4
    nj 4
    nk 4
    nl 4
    nm 4
    nn 4
    op 4
    oa 4
    ob 4
    oc 4
    od 4
    oe 4
    of 4
    og 4
    oh 4
    oi 4
    oj 4
    ok 4
    ol 4
    om 4
    on 4
    oo 4
  • TABLE 2
    Representative Mass Spec Results for Bivalent Compounds
    of Monovalent Compounds a-o
    Monovalent Mass (M + H)+
    Compound Tag theoretical found
    ba 1 1012 1012
    cp 1 1070 1070
    dd 1 902 902
    ed 1 916 916
    gf 1 1015 1015
    gg 1 1044 1044
    ia 1 1054 1054
    ib 1 998 998
    ig 1 1041 1041
    jp 1 860 860
    jf 1 1055 1055
    jh 1 1098 1098
    jj 1 1124 1124
    kg 1 1027 1027
    kj 1 1068 1068
    le 1 1015 1015
    mp 1 986 986
    ml 1 1043 1043
    np 1 1114 1114
    ne 1 1021 1021
    nf 1 1050 1050
    ng 1 1078 1078
    nh 1 1093 1093
    nj 1 1119 1119
    nk 1 1063 1063
    nm 1 1050 1050
    og 1 1055 1055
    oj 1 1096 1096
    aa 2 936 936
    cc 2 938 938
    da 2 853 853
    ea 2 867 867
    ff 2 854 854
    ic 2 923 923
    ii 2 908 908
    jb 2 908 908
    jc 2 965 965
    jf 2 923 923
    kp 2 672 672
    kb 2 852 852
    kc 2 909 909
    mk 2 867 867
    ml 2 911 911
    mm 2 854 854
    np 2 723 723
    nc 2 960 960
    nd 2 876 876
    nn 2 982 982
    oj 2 964 964
    ok 2 908 908
    oo 2 936 936
    cc 3 909 909
    dp 3 589 598
    dd 3 741 741
    ee 3 769 769
    hc 3 911 911
    ip 3 658 658
    if 3 852 852
    oi 3 894 894
    la 3 924 924
    ll 3 940 940
    mg 3 854 854
    ml 3 882 882
    kp 3 644 644
    ok 3 880 880
    kk 3 852 852
    ne 3 861 861
    on 3 931 931
    ja 3 936 936
    ji 3 922 922
    jj 3 964 964
  • TABLE 3
    Bivalent Compounds from Monovalent Compounds f′ to m′
    HPLC purity
    Monovalent mass mass (%)
    Compound Tag (desired) (found) UV (254 nm)
    pp 2 465.23 465.03 100
    g′p 2 703.37 703.28 100
    g′g′ 2 941.52 941.48 100
    h′p 2 759.44 759.36 100
    h′g′ 2 997.58 997.55 100
    h′h′ 2 1053.64 1053.65 100
    k′p 2 958.56 958.67 100
    k′g′ 2 1196.70 1196.79 100
    k′h′ 2 1252.76 1252.82 100
    k′k′ 2 1451.88 1452.05 100
    i′p 2 775.40 775.31 100
    i′g′ 2 1013.54 1013.52 100
    i′h′ 2 1069.60 1069.49 100
    i′k′ 2 1268.72 1268.83 97
    i′i′ 2 1085.56 1085.51 100
    l′p 2 886.54 886.55 100
    l′g′ 2 1124.68 1124.70 100
    l′h′ 2 1180.74 1180.96 100
    l′k′ 2 1379.86 1379.95 100
    l′i′ 2 1196.70 1196.78 100
    l′l′ 2 1307.84 1308.06 100
    m′p 2 942.60 942.74 100
    m′g′ 2 1180.74 1180.83 100
    m′h′ 2 1236.81 1236.86 100
    m′k′ 2 1435.93 1436.04 100
    m′i′ 2 1252.76 1252.87 100
    m′l′ 2 1363.90 1364.08 100
    m′m′ 2 1419.97 1420.04 100
    j′p 2 859.49 859.37 100
    j′g′ 2 1097.63 1097.69 100
    j′h′ 2 1153.70 1153.79 100
    j′k′ 2 1352.82 1352.93 100
    j′i′ 2 1169.65 1169.72 100
    j′l′ 2 1280.80 1280.79 100
    j′m′ 2 1336.86 1336.87 100
    j′j′ 2 1253.75 1253.73 100
    f′p 2 676.33 676.31 100
    f′g′ 2 914.47 914.32 98
    f′h′ 2 970.53 970.54 100
    f′k′ 2 1169.65 1169.82 100
    f′i′ 2 986.49 986.41 100
    f′l′ 2 1097.63 1097.72 100
    f′m′ 2 1153.70 1153.71 100
    f′j′ 2 1070.59 1070.69 100
    f′f′ 2 887.42 887.36 100
  • TABLE 4
    Bivalent Compounds from Monovalent Compounds h″ to w″
    Monovalent HPLC Purity (%)
    Compounds Tag UV 254 nm Sedex
    h″p 1 98 99
    h″h″ 1 97 97
    i″p 1 99 99
    i″h″ 1 90 95
    i″i″ 1 100 97
    j″p 1 95 100
    j″h″ 1 94 100
    j″i″ 1 92 100
    j″j″ 1 87 97
    k″p 1 97 100
    k″h″ 1 91 97
    k″i″ 1 90 96
    k″j″ 1 86 98
    k″k″ 1 95 100
    l″p 1 95 100
    l″h″ 1 90 98
    l″i″ 1 94 99
    l″j″ 1 87 100
    l″k″ 1 94 100
    l″l″ 1 100 100
    m″p 1 99 100
    m″h″ 1 99 99
    m″i″ 1 91 96
    m″j″ 1 85 97
    m″k″ 1 91 97
    m″l″ 1 90 96
    m″m″ 1 100 98
    n″p 1 95 99
    n″h″ 1 92 100
    n″i″ 1 92 99
    n″j″ 1 86 91
    n″k″ 1 88 100
    n″l″ 1 88 100
    n″m″ 1 92 97
    n″n″ 1 87 100
    o″p 1 97 100
    o″h″ 1 90 97
    o″i″ 1 94 96
    o″j″ 1 90 96
    o″k″ 1 94 100
    o″l″ 1 92 98
    o″m″ 1 93 96
    o″n″ 1 93 97
    o″o″ 1 92 100
    p″p 1 92 98
    p″h″ 1 90 96
    p″i″ 1 92 96
    p″j″ 1 87 97
    p″k″ 1 87 100
    p″l″ 1 100 100
    p″m″ 1 94 98
    p″n″ 1 90 98
    p″o″ 1 86 98
    p″p″ 1 100 100
    q″p 1 100 100
    q″h″ 1 96 96
    q″i″ 1 91 94
    q″j″ 1 90 97
    q″k″ 1 86 97
    q″l″ 1 88 97
    q″m″ 1 99 99
    q″n″ 1 90 95
    q″o″ 1 85 97
    q″p″ 1 90 97
    q″q″ 1 100 98
    r″p 1 100 100
    r″h″ 1 86 98
    r″i″ 1 100 100
    r″j″ 1 96 96
    r″k″ 1 95 95
    r″l″ 1 90 99
    r″m″ 1 90 100
    r″n″ 1 100 100
    r″o″ 1 98 100
    r″p″ 1 85 100
    r″q″ 1 87 100
    r″r″ 1 86 100
    s″p 1 98 100
    s″h″ 1 97 98
    s″i″ 1 85 95
    s″j″ 1 85 97
    s″k″ 1 85 93
    s″l″ 1 86 97
    s″m″ 1 92 98
    s″n″ 1 92 10
    s″o″ 1 95 100
    s″p″ 1 99 97
    s″q″ 1 92 99
    s″r″ 1 88 99
    s″s″ 1 98 100
    t″p 1 88 94
    t″h″ 1 85 95
    t″i″ 1 90 97
    t″j″ 1 98 100
    t″k″ 1 90 98
    t″l″ 1 87 95
    t″m″ 1 95 96
    t″n″ 1 93 100
    t″o″ 1 98 100
    t″p″ 1 97 100
    t″q″ 1 99 95
    t″r″ 1 85 89
    t″s″ 1 86 91
    t″t″ 1 85 86
    u″p 1 100 100
    u″h″ 1 87 90
    u″i″ 1 85 96
    u″j″ 1 85 97
    u″k″ 1 85 95
    u″l″ 1 93 97
    u″m″ 1 91 97
    u″n″ 1 97 95
    u″o″ 1 98 100
    u″p″ 1 85 88
    u″q″ 1 100 100
    u″r″ 1 99 96
    u″s″ 1 95 100
    u″t″ 1 91 99
    u″u″ 1 99 100
    v″p 1 93 98
    v″h″ 1 86 95
    v″i″ 1 88 95
    v″j″ 1 88 96
    v″k″ 1 100 100
    v″l″ 1 99 99
    v″m″ 1 87 96
    v″n″ 1 87 96
    v″o″ 1 99 99
    v″p″ 1 97 97
    v″q″ 1 90 90
    v″r″ 1 85 93
    v″s″ 1 85 85
    v″t″ 1 85 94
    v″u″ 1 85 94
    v″v″ 1 96 96
    w″p 1 91 95
    w″h″ 1 90 98
    w″i″ 1 95 95
    w″j″ 1 90 90
    w″k″ 1 90 90
    w″l″ 1 85 85
    w″m″ 1 85 85
    w″n″ 1 88 88
    w″o″ 1 85 85
    w″p″ 1 90 90
    w″q″ 1 97 97
    w″r″ 1 90 90
    w″s″ 1 88 88
    w″t″ 1 87 87
    w″u″ 1 85 85
    w″v″ 1 90 90
    w″w″ 1 90 90
    h″p 3 99 100
    h″h″ 3 94 90
    i″p 3 100 100
    i″h″ 3 92 90
    i″i″ 3 100 98
    j″p 3 100 100
    j″h″ 3 96 100
    j″i″ 3 93 98
    j″j″ 3 95 90
    k″p 3 99 97
    k″h″ 3 100 100
    k″i″ 3 100 100
    k″j″ 3 94 100
    k″k″ 3 95 95
    l″p 3 100 100
    l″h″ 3 96 100
    l″i″ 3 99 100
    l″j″ 3 100 100
    l″k″ 3 100 100
    l″l″ 3 91 100
    m″p 3 98 100
    m″h″ 3 97 92
    m″i″ 3 91 90
    m″j″ 3 100 100
    m″k″ 3 100 100
    m″l″ 3 100 97
    m″m″ 3 100 100
    n″p 3 100 100
    n″h″ 3 98 100
    n″i″ 3 88 97
    n″j″ 3 100 100
    n″k″ 3 97 97
    n″l″ 3 100 100
    n″m″ 3 94 100
    n″n″ 3 100 100
    o″p 3 91 95
    o″h″ 3 90 100
    o″i″ 3 97 100
    o″j″ 3 100 100
    o″k″ 3 100 100
    o″l″ 3 96 100
    o″m″ 3 97 91
    o″n″ 3 92 100
    o″o″ 3 93 93
    p″p 3 100 100
    p″h″ 3 97 97
    p″i″ 3 98 100
    p″j″ 3 100 100
    p″k″ 3 100 100
    p″l″ 3 97 100
    p″m″ 3 98 100
    p″n″ 3 100 100
    p″o″ 3 100 100
    p″p″ 3 94 90
    q″p 3 100 100
    q″h″ 3 94 100
    q″i″ 3 97 99
    q″j″ 3 100 100
    q″k″ 3 100 100
    q″l″ 3 95 100
    q″m″ 3 96 100
    q″n″ 3 100 100
    q″o″ 3 98 100
    q″p″ 3 100 100
    q″q″ 3 97 92
    s″p 3 93 100
    s″h″ 3 92 91
    s″i″ 3 100 100
    s″j″ 3 100 100
    s″k″ 3 100 100
    s″l″ 3 100 100
    s″m″ 3 81 100
    s″n″ 3 91 98
    s″o″ 3 100 100
    s″p″ 3 100 100
    s″q″ 3 92 93
    s″s″ 3 86 96
    t″p 3 98 99
    t″h″ 3 93 98
    t″i″ 3 100 100
    t″j″ 3 95 100
    t″k″ 3 100 100
    t″l″ 3 100 100
    t″m″ 3 100 100
    t″n″ 3 92 100
    t″o″ 3 100 100
    t″p″ 3 100 100
    t″q″ 3 100 100
    t″s′′′ 3 86 91
    t″t″ 3 97 100
    u″p 3 98 95
    u″h″ 3 100 100
    u″i″ 3 100 100
    u″j″ 3 84 100
    u″k″ 3 100 100
    u″l″ 3 100 100
    u″m″ 3 95 98
    u″n″ 3 89 91
    u″o″ 3 100 100
    u″p″ 3 100 100
    u″q″ 3 92 97
    u″s″ 3 100 100
    u″t″ 3 100 100
    u″u″ 3 100 100
    v″p 3 100 100
    v″h″ 3 82 100
    v″i″ 3 100 100
    v″j″ 3 100 100
    v″k″ 3 96 96
    v″l″ 3 100 97
    v″m″ 3 100 100
    v″n″ 3 100 100
    v″o″ 3 99 100
    v″p″ 3 100 100
    v″q″ 3 96 100
    v″s″ 3 100 99
    v″t″ 3 94 100
    v″u″ 3 100 100
    v″v″ 3 100 100
    w″p 3 98 100
    w″h″ 3 82 90
    w″i″ 3 96 100
    w″j″ 3 100 100
    w″k″ 3 90 95
    w″l″ 3 97 100
    w″m″ 3 100 100
    w″n″ 3 92 92
    w″o″ 3 100 100
    w″p″ 3 91 91
    w″q″ 3 100 100
    w″s″ 3 89 90
    w″t″ 3 93 100
    w″u″ 3 97 100
    w″v″ 3 100 100
    w″w″ 3 100 100
  • TABLE 5
    Representative Mass Spec Results for Bivalent Compounds
    of Monovalent Compounds h″ to w″
    Monovalent Mass
    Compounds Tag theoretical found
    h″h″ 1 1233.53 (M + K) 1233.52
    i″i″ 1 1096.62 (M + 2) 1096.62
    k″p 1 861.42 (M + 1) 861.45
    l″k″ 1 1127.58 (M + 2) 1127.56
    m″h″ 1 1233.52 (M + K) 1233.56
    n″n″ 1 1279 (M + K) 1279.60
    o″i″ 1 1148 (M + K) 1148.62
    o″o″ 1 1126.64 (M + 2) 1126.64
    p″o″ 1 1164.53 (M + K) 1164.54
    r″p 1 893.36 (M + 2) 893.37
    r″j″ 1 1237.52 (N + Na) 1237.61
    s″p″ 1 1100.51 (M + 1) 1100.57
    s″s″ 1 1095.49 (M + Na) 1095.56
    t″o″ 1 1100.52 (M + 1) 1100.61
    t″t″ 1 1075.41 (M + 1) 1075.47
    u″n″ 1 1164.52 (M + Na) 1164.56
    u″u″ 1 1043.49 (M + 1) 1043.62
    v″l″ 1 1178.50 (M + 2) 1178.59
    w″i″ 1 1256.54 (M + K) 1256.54
    w″r″ 1 1287.50 (M + Na) 1287.55
    h″h″ 3 1035.60 (M + H) 1035.63
    i″i″ 3 935.64 (M + H) 935.64
    l″j″ 3 1024.60 (M + H) 1024.64
    m″m″ 3 1035.60 (M + H) 1035.64
    n″k″ 3 1023.65 (M + H) 1023.68
    o″o″ 3 965.67 (M + H) 965.71
    p″i″ 3 951.60 (M + H) 951.64
    p″n″ 3 1024.60 (M + H) 1024.64
    q″h″ 3 1035.60 (M + H) 1035.57
    q″l″ 3 1001.58 (M + H) 1001.62
    q″q″ 3 1035.60 (M + H) 1035.60
    s″j″ 3 997.60 (M + H) 997.57
    s″o″ 3 939.61 (M + H) 939.65
    s″s″ 3 913.56 (M + H) 913.58
    t″p 3 1035.60 (M + H) 1035.57
    t″l″ 3 941.51 (M + H) 941.55
    u″n″ 3 982.59 (M + H) 982.61
    u″u″ 3 883.54 (M + H) 883.56
    v″i″ 3 1001.58 (M + H) 1001.61
    v″p″ 3 1017.54 (M + H) 1017.56
    w″m″ 3 1108.60 (M + H) 1108.63
  • TABLE 6
    Bivalent Compounds from Monovalent Compounds x″ to k′″
    Monovalent Mass Spec (M + H)+ HPLC Purity (%)
    Compounds Tag calculated found UV 254 nm SEDEX
    x″x″ 3 1135.74 1135.50 88 100
    x″y″ 3 1195.74 1195.54 97 100
    x″z″ 3 1234.81 1234.59 98 100
    x″a″ 3 1162.79 1162.51 93 100
    x″b′″ 3 1192.8 1192.78 98 100
    x″c′″ 3 1218.85 1218.61 100 100
    x″d′″ 3 1246.86 1246.74 100 100
    y″y″ 3 1255.75 1255.72 100 100
    y″z″ 3 1294.81 1294.78 91 95
    y″a′″ 3 1222.79 1222.62 100 100
    y″b′″ 3 1252.80 1252.66 95 100
    y″c′″ 3 1278.85 1278.70 93 100
    y″d′″ 3 1306.86 1306.68 99 100
    z″z″ 3 1333.88 1333.81 90 99
    z″a′″ 3 1261.85 1261.88 89 90
    z″b′″ 3 1291.87 1291.96 99 100
    z″c′″ 3 1317.92 1317.97 94 100
    z″d′″ 3 1345.92 1345.91 99 98
    a′″a′″ 3 1189.83 1189.64 100 100
    a′″b′″ 3 1219.84 1219.71 98 95
    a′″c′″ 3 1245.92 1245.73 98 99
    a′″d′″ 3 1273.90 1273.83 87 96
    b′″b′″ 3 1249.85 1249.71 98 99
    b′″c′″ 3 1275.91 1275.68 94 99
    b′″d′″ 3 1303.91 1303.74 98 100
    c′″c′″ 3 1301.96 1301.80 98 100
    c′″d′″ 3 1329.96 1329.85 100 100
    d′″d′″ 3 1357.97 1357.69 100 100
    x″p 3 786.49 786.26 91 100
    y″p 3 846.49 846.26 100 100
    z″p 3 885.56 885.47 98 100
    a′″p 3 813.54 813.34 95 100
    b′″p 3 843.55 843.31 91 99
    c′″p 3 869.6 869.40 82 94
    d′″p 3 897.61 897.41 95 100
    k′″p 3 885.11 885.52 100 100
    j′″p 3 897.16 897.58 100 100
    h′″p 3 843.07 843.54 100 100
    g′″p 3 813.04 813.37 100 100
    f′″p 3 785.98 786.49 100 100
    i′″p 3 869.15 869.40 100 100
    e′″p 3 846.09 846.33 100 100
    i′″i′″ 3 1301.8 1302.04 100 100
    i′″g′″ 3 1245.69 1245.87 100 100
    i′″k′″ 3 1317.75 1317.93 100 100
    i′″h′″ 3 1275.72 1275.82 100 100
    i′″f′″ 3 1218.62 1218.89 100 100
    i′″j′″ 3 1329.81 1329.98 100 100
    i′″e′″ 3 1278.74 1278.85 100 100
    g′″g′″ 3 1189.58 1189.73 100 100
    g′″k′″ 3 1261.65 1261.98 100 100
    g′″h′″ 3 1219.61 1219.75 100 100
    g′″f′″ 3 1162.52 1162.69 100 100
    g′″j′″ 3 1273.70 1273.76 100 100
    g′″e′″ 3 1222.63 1222.82 100 100
    k′″k′″ 3 1333.71 1333.86 100 100
    k′″h′″ 3 1291.67 1291.86 100 100
    k′″f′″ 3 1234.58 1234.73 100 100
    k′″j′″ 3 1345.77 1345.84 100 100
    k′″e′″ 3 1294.70 1294.78 100 100
    h′″h′″ 3 1249.64 1249.78 100 100
    h′″f′″ 3 1192.54 1192.80 100 100
    h′″j′″ 3 1303.73 1303.86 100 100
    h′″e′″ 3 1252.66 1252.79 100 100
    f′″f′″ 3 1135.45 1135.60 100 100
    f′″j′″ 3 1246.64 1246.85 100 100
    f′″e′″ 3 1195.57 1195.64 100 100
    j′″j′″ 3 1357.82 1357.93 98 100
    j′″e′″ 3 1306.75 1306.68 100 100
    e′″e′″ 3 1255.68 1255.68 100 100
    h′″y″ 3 1252.66 1252.53 100 100
    k′″y″ 3 1294.70 1294.58 100 100
    g′″y″ 3 1222.63 1222.59 100 100
    j′″y″ 3 1306.75 1306.63 100 100
    e′″y″ 3 1255.68 1255.62 100 100
    i′″c′″ 3 1301.8 1301.76 100 100
    e′″c′″ 3 1278.74 1278.73 100 100
    f′″c′″ 3 1218.62 1218.68 100 100
    h′″c′″ 3 1275.72 1275.78 100 100
    e′″x″ 3 1195.57 1195.61 97 100
    e′″b′″ 3 1252.66 1252.61 100 100
    i′″b′″ 3 1275.72 1275.64 100 100
    j′″x″ 3 1246.64 1246.61 95 99
    g′″c′″ 3 1245.69 1246.04 100 100
    k′″c′″ 3 1317.75 1318.13 99 100
    i′″z″ 3 1317.75 1318.07 100 100
    k′″z″ 3 1333.71 1333.88 100 100
    h′″z″ 3 1291.67 1291.94 100 100
    f′″z″ 3 1234.58 1234.77 99 100
    j′″z″ 3 1345.77 1346.13 100 100
    e′″z″ 3 1294.70 1294.92 100 100
    f′″a′″ 3 1162.52 1162.87 98 100
    f′″b′″ 3 1192.54 1192.93 100 100
    i′″x″ 3 1218.62 1218.96 100 100
    g′″x″ 3 1162.52 1162.88 100 100
    k′″x″ 3 1234.58 1234.94 100 100
    f′″x″ 3 1135.45 1135.90 100 100
    gi′″d′″ 3 1273.70 1274.06 100 100
    f′″d′″ 3 1246.64 1247.00 100 100
    i′″y″ 3 1278.74 100 100
    i′″d′″ 3 1329.81
    i′″a′″ 3 1245.69 98 100
    g′″z″ 3 1261.65
    g′″a′″ 3 1189.58
    k′″d′″ 3 1345.77
    k′″a′″ 3 1261.65 99 100
    g′″b′″ 3 1219.61 95 100
    k′″b′″ 3 1291.67 97 100
    h′″a′″ 3 1219.61 100 100
    h′″b′″ 3 1249.64 98 100
    h′″x″ 3 1192.54
    h′″d′″ 3 1303.73 99 100
    f′″y″ 3 1195.57
    j′″c′″ 3 1329.81
    j′″a′″ 3 1273.7
    j′″b′″ 3 1303.73 94 99
    j′″d′″ 3 1357.82 100 100
    e′″a′″ 3 1222.63
    e′″d′″ 3 1306.75
  • TABLE 7
    Bivalent Compounds from Monovalent Compounds c′′′′ to e′′′′
    HPLC purity
    Monovalent Mass Mass UV 254 nm
    Compounds Tag (desired) (found) (%)
    c′′′′c′′′′ 1 1629.67 1629.65 100
    c′′′′d′′′′ 1 1724.72 1724.49 100
    d′′′′d′′′′ 1 1819.77 1819.62 100
    c′′′′e′′′′ 1 1812.83 1812.94 98
    d′′′′e′′′′ 1 1907.88 1907.91 100
    e′′′′e′′′′ 1 1995.99 1996.06 100
    c′′′′c′′′′ 3 1469.71 1469.68 100
    d′′′′d′′′′ 3 1659.81 1659.91 100
    e′′′′e′′′′ 3 1836.03 1836.27 100
  • From the foregoing description, one skilled in the art can easily ascertain the essential characteristics of this disclosure, and without departing from the spirit and scope thereof, can make various changes and modifications to adapt the disclosure to various usages and conditions. The embodiments described hereinabove are meant to be illustrative only and should not be taken as limiting of the scope of the disclosure, which is defined in the following claims.

Claims (38)

1. A compound having the structure selected from the group consisting of:
Figure US20090264315A1-20091022-C00179
wherein R1 and R2 are comprised by at least one moiety comprising an amino acid side chain, and wherein R1 and R2 comprise non-peptidic bonds;
wherein X1 comprises a core molecule selected from the group consisting of heteroarylenes, arylenes and heterocyclenes and a nucleophilic moiety bound to said core molecule; and
wherein K1 and K2 comprise at least one spacer atom between said core molecule and said at least one moiety comprising an amino acid side chain.
2. The compound of claim 1, further comprising at least one 1,2,3-triazine moiety bound to said core molecule.
3. The compound of claim 1, wherein R1 and R2 comprise at least one structural fragment selected from the group consisting of:
Figure US20090264315A1-20091022-C00180
wherein R1 and R2 are independently selected.
4. The compound of claim 1, wherein said nucleophilic moiety comprises a moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
5. The compound of claim 1, wherein said nucleophilic moiety is bound directly to X1.
6. The compound of claim 1, wherein said nucleophilic moiety is bound to X1 through at least one spacer atom.
7. The compound of claim 1, wherein said core molecule comprises a moiety selected from the group consisting of a phenyl ring, a 1,2,3-triazole ring, a diketopiperazine ring, a 1,3,4-oxadiazole ring, a pyridine ring, and any substituted derivative or analog thereof.
8. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00181
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
9. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00182
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof;
wherein Z2 comprises a moiety selected from the group consisting of —CH2—, —CH2CH2— and —CH2CH2O—; and
wherein n1 is an integer from 1-20.
10. The compound of claim 9, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00183
11. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00184
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrollidine, azetidine, and any derivative or analog thereof; and
wherein Z3 and Z4 comprise moieties independently selected from the group consisting of CO2R3, CONR4R5, and CH2OH,
wherein R3 is selected from the group consisting of hydrogen and alkyl, and
wherein R4 and R5 are independently selected from the group consisting of hydrogen and alkyl.
12. The compound of claim 11, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00185
wherein R6 and R7 are independently selected from the group consisting of hydrogen and alkyl.
13. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00186
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
14. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00187
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrollidine, azetidine, and any derivative or analog thereof;
wherein Z2 comprises a moiety selected from the group consisting of —CH2—, —CH2CH2— and —CH2CH2O—; and
wherein n1 is an integer from 1-20.
15. The compound of claim 14, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00188
16. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00189
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof, and
wherein R8 and R9 are each independently selected from the group consisting of hydrogen and alkyl.
17. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00190
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof; and
wherein R10 and R11 are independently selected from the group consisting of hydrogen and alkyl.
18. The compound of claim 1, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00191
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
19. The compound of claim 1, wherein the compound has the structure:
Figure US20090264315A1-20091022-C00192
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof.
20. The compound of claim 1, wherein said compound is selected from the group consisting of:
Figure US20090264315A1-20091022-C00193
Figure US20090264315A1-20091022-C00194
Figure US20090264315A1-20091022-C00195
Figure US20090264315A1-20091022-C00196
Figure US20090264315A1-20091022-C00197
Figure US20090264315A1-20091022-C00198
Figure US20090264315A1-20091022-C00199
Figure US20090264315A1-20091022-C00200
Figure US20090264315A1-20091022-C00201
Figure US20090264315A1-20091022-C00202
Figure US20090264315A1-20091022-C00203
Figure US20090264315A1-20091022-C00204
Figure US20090264315A1-20091022-C00205
Figure US20090264315A1-20091022-C00206
Figure US20090264315A1-20091022-C00207
Figure US20090264315A1-20091022-C00208
Figure US20090264315A1-20091022-C00209
Figure US20090264315A1-20091022-C00210
Figure US20090264315A1-20091022-C00211
Figure US20090264315A1-20091022-C00212
Figure US20090264315A1-20091022-C00213
Figure US20090264315A1-20091022-C00214
21. A compound having the structure:
Figure US20090264315A1-20091022-C00215
wherein A1 comprises a macrocyclic ring comprising at least two amino acids, wherein said at least two amino acids are bound to each other in a ring comprising at least one peptide bond;
wherein Z1 comprises a nucleophilic moiety selected from the group consisting of piperidine, piperazine, pyrrolidine, azetidine, and any derivative or analog thereof; and
wherein S1 comprises a spacer group having at least one carbonyl moiety, wherein S1 does not comprise glycine.
22. The compound of claim 21, wherein said compound is selected from the group consisting of:
Figure US20090264315A1-20091022-C00216
23. A compound having the structure:
Figure US20090264315A1-20091022-C00217
wherein B1 is a core molecule selected from the group consisting of heteroarylenes, arylenes, and heterocyclenes; and
wherein P1 and P2 comprise an organic moiety comprising removal of a hydrogen atom from the compounds of claims 1 or 21, and wherein P1 and P2 are independently selected.
24. The compound of claim 23 further comprising a labeling tag T1 bound to B1.
25. The compound of claim 23 further comprising a third organic moiety comprising removal of a hydrogen atom from the compounds of claims 1 or 21 bound to B1, wherein said third organic moiety is selected independently of P1 and P2.
26. A compound having the structure:
Figure US20090264315A1-20091022-C00218
wherein P3 and P4 comprise an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of any of the compounds of claims 20 or 22, and wherein P3 and P4 are independently selected; and
wherein P5 comprises a moiety selected from the group consisting of an organic moiety comprising removal of a hydrogen atom from the nitrogen atom of the piperidine or piperazine ring of any of the compounds of claims 20 or 22 and a labeling tag T1, wherein P5 is selected independently of P3 and P4.
27. The compound of claim 26, wherein said compound has the structure:
Figure US20090264315A1-20091022-C00219
28. The compound of claim 27, wherein at least one of P3 and P4 further comprise a morpholinyl group, with the proviso that both P3 and P4 are not a morpholinyl group.
29. The compound of claims 24 or 26, wherein T1 is selected from the group consisting of a fluorescein tag, a biotin tag, a polyether tag, and a 1,2,3-triazole-functionalized polyether tag.
30. The compound of claim 29, wherein T1 is selected from the group consisting of:
Figure US20090264315A1-20091022-C00220
31. The compound of claim 28 comprising a combinatorial library, wherein compounds comprising the library are expressed in the shorthand form P3P4T1, and wherein:
1) P3 is selected from the group consisting of a, A, b, B, C, C, d, D, e, E, f, F, g, G, h, H, i, I, j, J, k, K, l, L, m, M, n, N, o, O, p, q, Q, r, R, s, S, t, T, u, U, v, V, w, W, x, X, y, Y, z, Z, a′, A′, b′, B′, c′, C′, d′, D′, e′, E′, f′, F′, g′, G′, h′, H′, i′, I′, j′, J′, k′, K′, l′, L′, m′, M′, n′, N′, o′, O′, p′, P′, q′, Q′, r′, R′, s′, S′, t′, T′, u′, U′, v′, V′, w′, W′, x′, X′, y′, Y′, z′, Z′, a″, A″, b″, B″c″, C″, d″, D″, e″, E″, f″, F″, g″, G″, h″, H″, i″, I″, j″, J″, k″, K″, l″, L″, m″, M″, n″, N″, o″, O″, p″, P″, q″, Q″, r″, R″, s″, S″, t″, T″, u″, U″, v″, V″, w″, W″, x″, X″, y″, Y″, z″, Z″, a′″, A′″, b′″, B′″, c′″, C′″, d′″, D′″, e′″, E′″, f′″, F′″, g′″, G′″, h′″, H′″, i′″, I′″, j′″, J′″, k′″, K′″, l′″, L′″, m′″, M′″, n′″, N′″, o′″, O′″, p′″, P′″, q′″, Q′″, r′″, R′″, s′″, S′″, t′″, T′″, u′″, U′″, V′″, v′″, w′″, W′″, x′″, X′″, y′″, Y′″, z′″, Z′″, a″″, A″″, b″″, B″″, c″″, C″″, d″″, D″″, e″″, and E″″;
2) P4 is selected from the group consisting of a, A, b, B, C, C, d, D, e, E, f, F, g, G, h, H, i, I, j, J, k, K, l, L, m, M, n, N, o, O, p, q, Q, r, R, s, S, t, T, u, U, v, V, w, W, x, X, y, Y, z, Z, a′, A′, b′, B′, c′, C′, d′, D′, e′, E′, f′, F′, g′, G′, h′, H′, i′, I′, j′, J′, k′, K′, l′, L′, m′, M′, n′, N′, o′, O′, p′, P′, q′, Q′, r′, R′, s′, S′, t′, T′, u′, U′, v′, V′, w′, W′, x′, X′, y′, Y′, z′, Z′, a″, A″, b″, B″c″, C″, d″, D″, e″, E″, f″, F″, g″, G″, h″, H″, i″, I″, j″, J″, k″, K″, l″, L″, m″, M″, n″, N″, o″, O″, p″, P″, q″, Q″, r″, R″, s″, S″, t″, T″, u″, U″, v″, V″, w″, W″, x″, X″, y″, Y″, z″, Z″, a′″, A′″, b′″, B′″, c′″, C′″, d′″, D′″, e′″, E′″, f′″, F′″, g′″, G′″, h′″, H′″, i′″, I′″, j′″, J′″, k′″, K′″, l′″, L′″, m′″, M′″, n′″, N′″, o′″, O′″, p′″, P′″, q′″, Q′″, r′″, R′″, s′″, S′″, t′″, T′″, u′″, U′″, V′″, v′″, w′″, W′″, x′″, X′″, y′″, Y′″, z′″, Z′″, a″″, A″″, b″″, B″″, c″″, C″″, d″″, D″″, e″″, and E″″;
3) T1 is selected from the group consisting of 1, 2, 3, and 4; and wherein all possible combinations of P3, P4 and T1 comprise the library.
32. A method of producing a library of compounds comprising:
1) providing
Figure US20090264315A1-20091022-C00221
 wherein T1 comprises a labeling tag;
2) reacting a first equivalent of any of the compounds of claims 20 or 22 or morpholine in the presence of a base and a solvent;
3) removing the solvent; and
4) reacting a second equivalent of any of the compounds of claims 20 or 22 or morpholine in the presence of a base and a solvent, with the proviso that said first equivalent and said second equivalent are not both morpholine.
33. The method of claim 32, wherein T1 is selected from the group consisting of:
Figure US20090264315A1-20091022-C00222
34. The method of claim 32, wherein said base comprises potassium carbonate.
35. A compound selected from claims 1 or 28 comprising demonstration of protein-protein interactions.
36. A compound selected from claims 1 or 28 comprising a pharmaceutical lead.
37. A compound selected from claim 28 comprising a pharmacological probe.
38. A compound selected from any one of claims 1, 21, 23, 25, or 26 comprising a pharmaceutical.
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