EP1166076A4 - Snp detection - Google Patents

Snp detection

Info

Publication number: EP1166076A4
Authority: EP; European Patent Office
Prior art keywords: snp detection; snp; detection
Prior art date: 1999-02-26
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.): Withdrawn

Application number

EP00914711A

Other languages

German (de)

French (fr)

Other versions

EP1166076A2 (en

Inventor

Lyle Arnold

Thomas Theriault

Tod Bedilion

Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)

Incyte Corp

Original Assignee

Incyte Genomics Inc

Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)

1999-02-26

Filing date

2000-02-24

Publication date

2004-10-27

2000-02-24 Application filed by Incyte Genomics Inc filed Critical Incyte Genomics Inc

2002-01-02 Publication of EP1166076A2 publication Critical patent/EP1166076A2/en

2004-10-27 Publication of EP1166076A4 publication Critical patent/EP1166076A4/en

Status Withdrawn legal-status Critical Current

Classifications

- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

Chemical & Material Sciences (AREA)
Organic Chemistry (AREA)
Life Sciences & Earth Sciences (AREA)
Zoology (AREA)
Wood Science & Technology (AREA)
Proteomics, Peptides & Aminoacids (AREA)
Health & Medical Sciences (AREA)
Engineering & Computer Science (AREA)
Microbiology (AREA)
Immunology (AREA)
Physics & Mathematics (AREA)
Molecular Biology (AREA)
Biotechnology (AREA)
Biophysics (AREA)
Analytical Chemistry (AREA)
Biochemistry (AREA)
Bioinformatics & Cheminformatics (AREA)
General Engineering & Computer Science (AREA)
General Health & Medical Sciences (AREA)
Genetics & Genomics (AREA)
Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

EP00914711A 1999-02-26 2000-02-24 Snp detection Withdrawn EP1166076A4 (en)

Applications Claiming Priority (3)

Application Number	Priority Date	Filing Date	Title
US259898		1988-10-19
US09/259,898 US6410231B1 (en)	1999-02-26	1999-02-26	SNP detection
PCT/US2000/004876 WO2000050869A2 (en)	1999-02-26	2000-02-24	Snp detection

Publications (2)

Publication Number	Publication Date
EP1166076A2 EP1166076A2 (en)	2002-01-02
EP1166076A4 true EP1166076A4 (en)	2004-10-27

Family

ID=22986903

Family Applications (1)

Application Number	Title	Priority Date	Filing Date
EP00914711A Withdrawn EP1166076A4 (en)	1999-02-26	2000-02-24	Snp detection

Country Status (6)

Country	Link
US (2)	US6410231B1 (en)
EP (1)	EP1166076A4 (en)
JP (1)	JP2002537780A (en)
AU (1)	AU755398B2 (en)
CA (1)	CA2362619A1 (en)
WO (1)	WO2000050869A2 (en)

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US7361310B1 (en) *	2001-11-30	2008-04-22	Northwestern University	Direct write nanolithographic deposition of nucleic acids from nanoscopic tips
US8725418B2 (en)	2002-03-25	2014-05-13	Janssen Pharmaceutica, N.V.	Data mining of SNP databases for the selection of intragenic SNPs
US7601493B2 (en) *	2002-07-26	2009-10-13	Nanogen, Inc.	Methods and apparatus for screening and detecting multiple genetic mutations
US7452712B2 (en)	2002-07-30	2008-11-18	Applied Biosystems Inc.	Sample block apparatus and method of maintaining a microcard on a sample block
CN102344960B (en)	2002-09-06	2014-06-18	波士顿大学信托人	Quantification of gene expression
AU2003273640A1 (en) *	2002-10-10	2004-05-04	K.U. Leuven Research And Development	Autism gene
EP3000899A1 (en)	2002-12-04	2016-03-30	Applied Biosystems, LLC	Multiplex amplification of polynucleotides
EP1578952B1 (en) *	2002-12-12	2011-11-23	Nanosphere, Inc.	Direct snp detection with unamplified dna
EP1590471A4 (en)	2002-12-31	2009-12-09	Metamorphix Inc	Compositions, methods and systems for inferring bovine traits
US20040224331A1 (en)	2003-01-17	2004-11-11	The Trustees Of Boston University	Haplotype analysis
CA2897376A1 (en) *	2003-02-26	2004-09-10	Radoje T. Drmanac	Modular system and probes for dna analysis
EP1606419A1 (en)	2003-03-18	2005-12-21	Quantum Genetics Ireland Limited	Systems and methods for improving protein and milk production of dairy herds
US20040191776A1 (en) *	2003-03-21	2004-09-30	Pei-Jer Chen	Method for genotyping and quantifying Hepatitis B Virus
US20040203005A1 (en) *	2003-04-14	2004-10-14	White Wanda L. B.	Dual hybridization of complex nucleic acid samples for sequencing and single-nucleotide polymorphism identification
WO2004111266A1 (en)	2003-06-17	2004-12-23	Human Genetic Signatures Pty Ltd	Methods for genome amplification
CN1863927B (en)	2003-09-04	2010-08-11	人类遗传标记控股有限公司	Nucleic acid detection assay
CN101985619B (en)	2003-10-08	2014-08-20	波士顿大学信托人	Methods for prenatal diagnosis of chromosomal abnormalities
CA2543786A1 (en) *	2003-10-24	2005-05-06	Mmi Genomics, Inc.	Methods and systems for inferring traits to manage non-beef livestock
US20060008815A1 (en) *	2003-10-24	2006-01-12	Metamorphix, Inc.	Compositions, methods, and systems for inferring canine breeds for genetic traits and verifying parentage of canine animals
WO2005056834A1 (en) *	2003-12-10	2005-06-23	Olympus Corporation	Method of analyzing nucleic acid sequence
EP1721014B1 (en)	2004-02-18	2013-07-17	Trustees Of Boston University	Method for detecting and quantifying rare mutations/polymorphisms
MXPA06009452A (en)	2004-02-19	2007-03-15	Univ Alberta	Leptin promoter polymorphisms and uses thereof.
WO2005085475A1 (en)	2004-03-01	2005-09-15	Applera Corporation	Methods, compositions and kits for use in polynucleotide amplification
US8168777B2 (en)	2004-04-29	2012-05-01	Human Genetic Signatures Pty. Ltd.	Bisulphite reagent treatment of nucleic acid
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WO2006026828A1 (en)	2004-09-10	2006-03-16	Human Genetic Signatures Pty Ltd	Amplification blocker comprising intercalating nucleic acids (tna) containing intercalating pseudonucleotides (ipn)
US20060121491A1 (en) *	2004-12-02	2006-06-08	Wolber Paul K	Partially degenerate oligonucleotide standards and methods for generating the same
KR101293713B1 (en)	2004-12-03	2013-08-12	휴먼 제네틱 시그너처스 피티와이 엘티디	Methods for simplifying microbial nucleic acids by chemical modification of cytosines
WO2006116010A2 (en) *	2005-04-21	2006-11-02	Advandx, Inc.	Detection of virulence markers of staphylococci
CN101203618B (en)	2005-05-26	2013-03-13	人类遗传标记控股有限公司	Isothermal strand displacement amplification using primers containing a non-regular base
WO2007002567A2 (en) *	2005-06-23	2007-01-04	Nanosphere, Inc.	Selective isolation and concentration of nucleic acids from complex samples
US20060292576A1 (en) *	2005-06-23	2006-12-28	Quest Diagnostics Investments Incorporated	Non-in situ hybridization method for detecting chromosomal abnormalities
EP1943353B1 (en)	2005-09-14	2011-11-02	Human Genetic Signatures PTY Ltd	Assay for a health state
JP2007117060A (en) *	2005-10-31	2007-05-17	Tohoku Univ	Method for discriminating silent mutation lineage of crop and method for discriminating place of production of agricultural crop
US8076074B2 (en) *	2005-11-29	2011-12-13	Quest Diagnostics Investments Incorporated	Balanced translocation in comparative hybridization
EP2617837A3 (en)	2007-06-08	2013-10-23	Biogen Idec MA Inc.	Biomarkers for predicting anti-TNF responsiveness or non-responsiveness
WO2008157550A2 (en) *	2007-06-20	2008-12-24	Northwestern University	Patterning with compositions containing nanomaterials and polymers
CA2690723A1 (en) *	2007-08-08	2009-02-12	Northwestern University	Independently-addressable, self-correcting inking for cantilever arrays
US20090137417A1 (en) *	2007-10-17	2009-05-28	Michigan State University	Microarray-Based Gene Copy Number Analyses
CA2706740C (en)	2007-11-27	2017-01-17	Human Genetic Signatures Pty Ltd	Enzymes for amplification and copying bisulphite modified nucleic acids
US8093063B2 (en)	2007-11-29	2012-01-10	Quest Diagnostics Investments Incorporated	Assay for detecting genetic abnormalities in genomic nucleic acids
EP2318552B1 (en)	2008-09-05	2016-11-23	TOMA Biosciences, Inc.	Methods for stratifying and annotating cancer drug treatment options
WO2011100503A1 (en)	2010-02-11	2011-08-18	Dana Farber Cancer Institute, Inc.	Methods for predicting likelihood of responding to treatment
EP2576823A1 (en)	2010-06-04	2013-04-10	Institut National De La Sante Et De La Recherche Medicale (Inserm)	Constitutively active prolactin receptor variants as prognostic markers and therapeutic targets to prevent progression of hormone-dependent cancers towards hormone-independence
US20120070885A1 (en) *	2010-09-21	2012-03-22	Florida State University Research Foundation	Integrated device for analyzing aqueous samples using lipid multilayer gratings
AU2011305445B2 (en)	2010-09-24	2017-03-16	The Board Of Trustees Of The Leland Stanford Junior University	Direct capture, amplification and sequencing of target DNA using immobilized primers
US9732375B2 (en)	2011-09-07	2017-08-15	Human Genetic Signatures Pty. Ltd.	Molecular detection assay using direct treatment with a bisulphite reagent
GB201208726D0 (en) *	2012-05-17	2012-07-04	Oxford Gene Tech Ip Ltd	Methods and materials
US9540699B2 (en)	2013-03-13	2017-01-10	William Beaumont Hospital	Methods of diagnosing increased risk of developing MRSA
US20150037787A1 (en) *	2013-07-31	2015-02-05	International Business Machines Corporation	Polynucleotide configuration for reliable electrical and optical sensing
CN106029899B (en) *	2013-09-30	2021-08-03	深圳华大基因股份有限公司	Method, system and computer readable medium for determining SNP information in predetermined region of chromosome
DK3066219T3 (en) *	2013-11-08	2019-03-11	Ionis Pharmaceuticals Inc	METHODS FOR DETECTING OIGONUCLEOTIDES
EP3277836B1 (en)	2015-04-02	2019-02-27	HMNC Value GmbH	Method of treatment using genetic predictors of a response to treatment with ssr-125543
GB2569478B (en) *	2016-10-20	2022-06-01	Hitachi High Tech Corp	Method for treating biomolecules and method for analyzing biomolecules
CN110678557A (en)	2017-03-31	2020-01-10	玛赛拉·基亚里	Genotyping of mutations by in-tube hybridization in combination with universal tag-microarray
WO2022003609A1 (en) *	2020-07-01	2022-01-06	Biorchestra Co., Ltd.	Snp diagnostic methods

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WO1996031622A1 (en) *	1995-04-07	1996-10-10	Oxford Gene Technology Limited	Detecting dna sequence variations
US5633134A (en) *	1992-10-06	1997-05-27	Ig Laboratories, Inc.	Method for simultaneously detecting multiple mutations in a DNA sample
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1999
- 1999-02-26 US US09/259,898 patent/US6410231B1/en not_active Expired - Fee Related
2000
- 2000-02-24 CA CA002362619A patent/CA2362619A1/en not_active Abandoned
- 2000-02-24 EP EP00914711A patent/EP1166076A4/en not_active Withdrawn
- 2000-02-24 JP JP2000601417A patent/JP2002537780A/en active Pending
- 2000-02-24 AU AU36065/00A patent/AU755398B2/en not_active Ceased
- 2000-02-24 WO PCT/US2000/004876 patent/WO2000050869A2/en not_active Application Discontinuation
2002
- 2002-06-24 US US10/178,318 patent/US20030059813A1/en not_active Abandoned

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Also Published As

Publication number	Publication date
WO2000050869A2 (en)	2000-08-31
US20030059813A1 (en)	2003-03-27
AU755398B2 (en)	2002-12-12
EP1166076A2 (en)	2002-01-02
US6410231B1 (en)	2002-06-25
JP2002537780A (en)	2002-11-12
AU3606500A (en)	2000-09-14
CA2362619A1 (en)	2000-08-31
WO2000050869A3 (en)	2000-11-02

Publication	Publication Date	Title
EP1166076A4 (en)	2004-10-27	Snp detection
DE60026352D1 (en)	2006-04-27	Biosensor
GB2355523B (en)	2004-03-10	Detection system
GB9920301D0 (en)	1999-11-03	Level sensing
EP1182450A4 (en)	2003-01-15	Biosensor
EP1067391A4 (en)	2003-06-25	Current sensor
EP1078341A4 (en)	2010-01-06	Proximity sensor
GB9904645D0 (en)	1999-04-21	Alarm sensor
GB9903584D0 (en)	1999-04-07	Modified calycins
GB9928232D0 (en)	2000-01-26	Detection system
GB2341929B (en)	2002-07-31	Position detection
GB9921682D0 (en)	1999-11-17	Detecting cell-condition changes
EP1170018A4 (en)	2002-04-17	Ligand-bonded complex
GB9914798D0 (en)	1999-08-25	Ensure
GB2346699B (en)	2003-09-17	Position sensing
GB9902087D0 (en)	1999-03-24	Detection means
GB2361308B (en)	2002-04-10	Detection system
GB9919226D0 (en)	1999-10-20	Allele detection
GB9922281D0 (en)	1999-11-17	Polymorphism
GB9924633D0 (en)	1999-12-22	Sensors
IL144237A0 (en)	2002-05-23	Organoprotective solutions
GB9904520D0 (en)	1999-04-21	Electro-magnetic detection
GB9901101D0 (en)	1999-03-10	Proximity sensor
GB9907321D0 (en)	2000-11-15	Detection system
GB9906208D0 (en)	1999-05-12	Detection system

Legal Events

Date	Code	Title	Description
2001-11-16	PUAI	Public reference made under article 153(3) epc to a published international application that has entered the european phase	Free format text: ORIGINAL CODE: 0009012
2002-01-02	17P	Request for examination filed	Effective date: 20010917
2002-01-02	AK	Designated contracting states	Kind code of ref document: A2 Designated state(s): AT BE CH CY DE DK ES FI FR GB GR IE IT LI LU MC NL PT SE
2002-01-02	AX	Request for extension of the european patent	Free format text: AL;LT;LV;MK;RO;SI
2004-10-27	A4	Supplementary search report drawn up and despatched	Effective date: 20040914
2004-10-27	RIC1	Information provided on ipc code assigned before grant	Ipc: 7G 01N 1/00 A Ipc: 7C 12Q 1/68 B
2005-04-22	STAA	Information on the status of an ep patent application or granted ep patent	Free format text: STATUS: THE APPLICATION IS DEEMED TO BE WITHDRAWN
2005-06-08	18D	Application deemed to be withdrawn	Effective date: 20041201