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DE60042623D1 - Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen - Google Patents

Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen

Info

Publication number
DE60042623D1
DE60042623D1 DE60042623T DE60042623T DE60042623D1 DE 60042623 D1 DE60042623 D1 DE 60042623D1 DE 60042623 T DE60042623 T DE 60042623T DE 60042623 T DE60042623 T DE 60042623T DE 60042623 D1 DE60042623 D1 DE 60042623D1
Authority
DE
Germany
Prior art keywords
probes
microorganisms
polynucleotide
collection
identification
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Lifetime
Application number
DE60042623T
Other languages
English (en)
Inventor
James J Hogan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Gen Probe Inc
Original Assignee
Gen Probe Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc filed Critical Gen Probe Inc
Application granted granted Critical
Publication of DE60042623D1 publication Critical patent/DE60042623D1/de
Anticipated expiration legal-status Critical
Expired - Lifetime legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Immunology (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
DE60042623T 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen Expired - Lifetime DE60042623D1 (de)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US13241199P 1999-05-03 1999-05-03
US15014999P 1999-08-20 1999-08-20

Publications (1)

Publication Number Publication Date
DE60042623D1 true DE60042623D1 (de) 2009-09-03

Family

ID=26830335

Family Applications (2)

Application Number Title Priority Date Filing Date
DE60042623T Expired - Lifetime DE60042623D1 (de) 1999-05-03 2000-05-03 Polynukleotidmatrix-basiertes Verfahren zur Identifizierung von Mikroorganismen
DE60038015T Expired - Lifetime DE60038015T2 (de) 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen

Family Applications After (1)

Application Number Title Priority Date Filing Date
DE60038015T Expired - Lifetime DE60038015T2 (de) 1999-05-03 2000-05-03 Verfahren, basierend auf einer polynukleotidmatrix, zur identifizierung von mikroorganismen

Country Status (7)

Country Link
EP (1) EP1177318B1 (de)
JP (1) JP2002542808A (de)
AT (2) ATE386139T1 (de)
AU (2) AU778230B2 (de)
CA (1) CA2370255C (de)
DE (2) DE60042623D1 (de)
WO (1) WO2000066789A2 (de)

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US6821770B1 (en) 1999-05-03 2004-11-23 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
AU768208B2 (en) 1999-05-03 2003-12-04 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of staphylococcus
US20040121309A1 (en) 2002-12-06 2004-06-24 Ecker David J. Methods for rapid detection and identification of bioagents in blood, bodily fluids, and bodily tissues
US7666588B2 (en) 2001-03-02 2010-02-23 Ibis Biosciences, Inc. Methods for rapid forensic analysis of mitochondrial DNA and characterization of mitochondrial DNA heteroplasmy
US20030027135A1 (en) 2001-03-02 2003-02-06 Ecker David J. Method for rapid detection and identification of bioagents
WO2004060278A2 (en) 2002-12-06 2004-07-22 Isis Pharmaceuticals, Inc. Methods for rapid identification of pathogens in humans and animals
US7226739B2 (en) 2001-03-02 2007-06-05 Isis Pharmaceuticals, Inc Methods for rapid detection and identification of bioagents in epidemiological and forensic investigations
US7217510B2 (en) 2001-06-26 2007-05-15 Isis Pharmaceuticals, Inc. Methods for providing bacterial bioagent characterizing information
US8073627B2 (en) 2001-06-26 2011-12-06 Ibis Biosciences, Inc. System for indentification of pathogens
WO2003100076A2 (en) * 2002-05-17 2003-12-04 Applera Corporation Pna probes, probe sets, method and kits pertaining to the determination of listeria
JP2007014351A (ja) * 2003-04-02 2007-01-25 Canon Inc 感染症検出用プローブ、遺伝子検出用のプローブ、感染症起炎菌増幅反応用プライマー、感染症起炎菌増幅反応用プライマーセット及び感染症起炎菌検出方法
JP2004313181A (ja) * 2003-04-02 2004-11-11 Canon Inc 感染症起炎菌検出用プローブ及びプローブセット、ならびに担体及び遺伝子検査方法
US8057993B2 (en) 2003-04-26 2011-11-15 Ibis Biosciences, Inc. Methods for identification of coronaviruses
US7964343B2 (en) 2003-05-13 2011-06-21 Ibis Biosciences, Inc. Method for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US8158354B2 (en) 2003-05-13 2012-04-17 Ibis Biosciences, Inc. Methods for rapid purification of nucleic acids for subsequent analysis by mass spectrometry by solution capture
US7956175B2 (en) 2003-09-11 2011-06-07 Ibis Biosciences, Inc. Compositions for use in identification of bacteria
US8097416B2 (en) 2003-09-11 2012-01-17 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
US8546082B2 (en) 2003-09-11 2013-10-01 Ibis Biosciences, Inc. Methods for identification of sepsis-causing bacteria
WO2005027731A2 (en) * 2003-09-19 2005-03-31 University Of Rochester Biagnostic system for otolaryngologic pathogens and use thereof
US7666592B2 (en) 2004-02-18 2010-02-23 Ibis Biosciences, Inc. Methods for concurrent identification and quantification of an unknown bioagent
EP2458619B1 (de) 2004-05-24 2017-08-02 Ibis Biosciences, Inc. Massenspektrometrie mit selektivem Ionfilter durch digitale Schwelle
US20050266411A1 (en) 2004-05-25 2005-12-01 Hofstadler Steven A Methods for rapid forensic analysis of mitochondrial DNA
US7811753B2 (en) 2004-07-14 2010-10-12 Ibis Biosciences, Inc. Methods for repairing degraded DNA
WO2006135400A2 (en) 2004-08-24 2006-12-21 Isis Pharmaceuticals, Inc. Methods for rapid identification of recombinant organisms
EP1817432A2 (de) * 2004-10-05 2007-08-15 Wyeth a Corporation of the State of Delaware Sonden-arrays zur detektion von mehreren stämmen verschiedener arten
US8084207B2 (en) 2005-03-03 2011-12-27 Ibis Bioscience, Inc. Compositions for use in identification of papillomavirus
EP1869180B1 (de) 2005-03-03 2013-02-20 Ibis Biosciences, Inc. Zusammensetzung zur Verwendung bei der Identifikation von Polyomaviren
EP1904655A2 (de) 2005-07-21 2008-04-02 Isis Pharmaceuticals, Inc. Verfahren zur raschen identifizierung und quantifizierung von nukleinsäurevarianten
ATE514794T1 (de) * 2006-05-12 2011-07-15 Gen Probe Inc Zusammensetzungen und verfahren für den nachweis von enterokokken-nukleinsäuren
EP2064332B1 (de) 2006-09-14 2012-07-18 Ibis Biosciences, Inc. Gezielte gesamtgenomamplifizierung zur identifizierung von krankheitserregern
EP2126132B1 (de) 2007-02-23 2013-03-20 Ibis Biosciences, Inc. Verfahren für schnelle forensische dna-analyse
EP1978111B1 (de) 2007-04-02 2013-03-27 Gen-Probe Incorporated Zusammensetzungen, Kits und zugehörige Verfahren zur Erkennung und/oder Überwachung von Pseudomonas aeruginosa
EP1997905A1 (de) * 2007-06-01 2008-12-03 Friesland Brands B.V. Amplifikation von Nukleinsäure
WO2008151023A2 (en) 2007-06-01 2008-12-11 Ibis Biosciences, Inc. Methods and compositions for multiple displacement amplification of nucleic acids
CA2715991A1 (en) 2007-12-26 2009-07-09 Gen-Probe Incorporated Amplification oligomers and methods to detect candida albicans 26s rrna or encoding dna
WO2010033627A2 (en) 2008-09-16 2010-03-25 Ibis Biosciences, Inc. Sample processing units, systems, and related methods
EP2349549B1 (de) 2008-09-16 2012-07-18 Ibis Biosciences, Inc. Mischpatronen, mischstationen und verwandte ausrüstungen, und system
US8534447B2 (en) 2008-09-16 2013-09-17 Ibis Biosciences, Inc. Microplate handling systems and related computer program products and methods
US8158936B2 (en) 2009-02-12 2012-04-17 Ibis Biosciences, Inc. Ionization probe assemblies
CN104722342B (zh) 2009-03-24 2017-01-11 芝加哥大学 滑动式芯片装置和方法
US10196700B2 (en) 2009-03-24 2019-02-05 University Of Chicago Multivolume devices, kits and related methods for quantification and detection of nucleic acids and other analytes
US9447461B2 (en) 2009-03-24 2016-09-20 California Institute Of Technology Analysis devices, kits, and related methods for digital quantification of nucleic acids and other analytes
US9464319B2 (en) 2009-03-24 2016-10-11 California Institute Of Technology Multivolume devices, kits and related methods for quantification of nucleic acids and other analytes
EP2454000A4 (de) 2009-07-17 2016-08-10 Ibis Biosciences Inc Systeme zur identifizierung von biowirkstoffen
WO2011008971A1 (en) 2009-07-17 2011-01-20 Ibis Biosciences, Inc. Lift and mount apparatus
EP3225695A1 (de) 2009-10-15 2017-10-04 Ibis Biosciences, Inc. Multiple-displacement-amplifikation
WO2018017880A1 (en) * 2016-07-20 2018-01-25 Management Revenue Group P.R., Llc Kits and methods for detecting and treating gastrointestinal disorders and infections

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ATE163680T1 (de) * 1986-11-24 1998-03-15 Gen Probe Inc Nukleinsäuresonden zum nachweis und/oder zur quantifizierung von nicht-viralen organismen
WO1988006189A1 (en) * 1987-02-12 1988-08-25 Sdi Diagnostics, Inc. Test system, test device and method for detecting pathogenic organisms and antibiotic resistance genes in body fluids
CA2031499A1 (en) * 1989-05-31 1990-12-01 David J. Lane Universal eubacteria nucleic acid probes and methods
CA2025181A1 (en) * 1989-10-12 1991-04-13 William G. Weisburg Nucleic acid probes and methods for detecting fungi
US5593836A (en) * 1993-05-14 1997-01-14 Niemiec; John T. Primers and probes for detecting Pneumocystis carinii
ES2150103T3 (es) * 1995-01-19 2000-11-16 Gen Probe Inc Oligonucleotidos de amplificacion de acido nucleico y sondas para borrelia asociados con la enfermedad de lyme.
JP2000504575A (ja) * 1996-02-08 2000-04-18 アフィメトリックス，インコーポレイテッド 微生物のチップベースの種分化および表現型特徴付け
WO1998028444A2 (en) * 1996-12-23 1998-07-02 The University Of Chicago Customized oligonucleotide microchips as multiple biosensors

Also Published As

Publication number Publication date
WO2000066789A2 (en) 2000-11-09
AU4705600A (en) 2000-11-17
CA2370255A1 (en) 2000-11-09
DE60038015T2 (de) 2009-02-12
JP2002542808A (ja) 2002-12-17
EP1177318B1 (de) 2008-02-13
AU2005200846B2 (en) 2007-08-16
CA2370255C (en) 2011-03-29
EP1177318A2 (de) 2002-02-06
AU778230B2 (en) 2004-11-25
DE60038015D1 (de) 2008-03-27
ATE386139T1 (de) 2008-03-15
WO2000066789A3 (en) 2001-05-03
AU2005200846A1 (en) 2005-03-24
ATE437242T1 (de) 2009-08-15

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