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CN113214307A - Intermediate for preparing eribulin and preparation method thereof - Google Patents

Intermediate for preparing eribulin and preparation method thereof Download PDF

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CN113214307A
CN113214307A CN202010090205.9A CN202010090205A CN113214307A CN 113214307 A CN113214307 A CN 113214307A CN 202010090205 A CN202010090205 A CN 202010090205A CN 113214307 A CN113214307 A CN 113214307A
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张富尧
李火明
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Selection Bioscience LLC
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    • C07ORGANIC CHEMISTRY
    • C07FACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F7/00Compounds containing elements of Groups 4 or 14 of the Periodic Table
    • C07F7/02Silicon compounds
    • C07F7/08Compounds having one or more C—Si linkages
    • C07F7/18Compounds having one or more C—Si linkages as well as one or more C—O—Si linkages
    • C07F7/1804Compounds having Si-O-C linkages
    • C07F7/1872Preparation; Treatments not provided for in C07F7/20
    • C07F7/1892Preparation; Treatments not provided for in C07F7/20 by reactions not provided for in C07F7/1876 - C07F7/1888
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    • C07ORGANIC CHEMISTRY
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    • C07D493/00Heterocyclic compounds containing oxygen atoms as the only ring hetero atoms in the condensed system
    • C07D493/22Heterocyclic compounds containing oxygen atoms as the only ring hetero atoms in the condensed system in which the condensed system contains four or more hetero rings
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    • C07ORGANIC CHEMISTRY
    • C07FACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F7/00Compounds containing elements of Groups 4 or 14 of the Periodic Table
    • C07F7/02Silicon compounds
    • C07F7/08Compounds having one or more C—Si linkages
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Abstract

The invention relates to an eribulin intermediate and a preparation method thereof. Specifically, the invention relates to a compound shown as a formula III. The invention also particularly relates to a preparation method of the compound shown in the formula III, and a method for preparing the compound shown in the formula II by using the compound shown in the formula III. The method has the advantages of mild and safe reaction conditions, simple and convenient operation and purification, high product purity and the like, and is suitable for large-scale production.

Description

Intermediate for preparing eribulin and preparation method thereof
Technical Field
The invention relates to an intermediate for preparing eribulin and a preparation method thereof.
Background
Eribulin (shown as formula I) is a derivative for optimizing the structure of macrolide compound halichondrin B extracted from marine natural product Halichondria okadai, and is a halichondrin microtubule dynamics inhibitor. Eribulin mesylate injection (Halaven) was first approved by the FDA for treatment of metastatic breast cancer patients who received at least two chemotherapy regimens 11/15 2010 and was approved for marketing in china 7/17 2019.
Figure BSA0000201635790000011
Eribulin has a complex molecular structure containing 40 carbon atoms, wherein 19 carbon atoms have a chiral center, and the current market drug supply can only be realized through a total synthesis route. Patent CN108659031 discloses an eribulin intermediate shown in formula II, which is prepared from a compound shown in formula IV through an ozonization reaction. However, the ozonization reaction needs special ozonization generation equipment and extremely low reaction temperature, so that the complexity and energy consumption of the reaction equipment are increased, and the eribulin intermediate prepared by the ozonization reaction and shown as the formula II is low in purity and difficult in purification process, so that the quality of the eribulin final product is influenced. In addition, the ozone has extremely strong oxidizing ability, and the leakage of the gas easily causes great damage to human bodies and plastic equipment. Therefore, a milder and safer reaction condition is needed to prepare the compound shown in formula II for the synthesis of eribulin.
Figure BSA0000201635790000012
Disclosure of Invention
Aiming at the defects of harsh reaction conditions, large reagent hazard, difficult purification process, low purity and the like of the existing synthesis method of the eribulin key intermediate shown in the formula II, the invention provides a new synthesis method of the eribulin intermediate shown in the formula II.
The invention provides a novel method for preparing eribulin intermediate shown in formula II,
Figure BSA0000201635790000021
specifically, the synthesis method comprises the following steps:
1) carrying out dihydroxylation reaction on the compound shown as the formula IV to obtain a compound shown as a formula III;
2) carrying out oxidation reaction on the compound shown in the formula III to obtain a compound shown in a formula II;
wherein, in the compound shown in the formula III, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
Wherein, the compound IV can be prepared according to the patent (CN 108659031).
In a preferred embodiment of the present invention, the method comprises the following steps:
1) adding a dihydroxylation reaction catalyst and a dihydroxylation reaction equivalent oxidant into an organic solvent or an organic solvent/water mixed solvent of a compound IV at 0-40 ℃, reacting, and continuously stirring for 30 min-6 h at 0-40 ℃. TLC showed complete conversion of starting material. Adding sodium thiosulfate aqueous solution to carry out quenching reaction, extracting with ethyl acetate, concentrating an organic phase, and purifying by column chromatography to obtain the compound shown in the formula III.
2) Adding an oxidizing reagent into an organic solvent or an organic solvent/water mixed solvent of the compound III at 0-40 ℃, and continuously stirring for 30 min-6 h at 0-40 ℃ for reaction. TLC showed complete conversion of starting material. And (3) filtering the reaction liquid by using kieselguhr, washing a filter cake by using ethyl acetate, concentrating the filtrate, and purifying by column chromatography to obtain the compound shown as the formula II.
Compared with the existing ozonization scheme (CN108659031), the scheme for preparing the compound shown in the formula II has the advantages of mild reaction conditions, safe reaction reagents, low energy consumption, simple equipment operation and the like. On the other hand, the obtained compound shown as the formula II has higher purity due to the addition of an intermediate (the compound shown as the formula III) and column chromatography purification operation, and is more suitable for preparing eribulin.
In a preferred embodiment of the present invention, the dihydroxylation reaction catalyst in step 1) is selected from one or more of osmium tetraoxide, potassium osmate and potassium permanganate.
In another preferred embodiment of the present invention, the dihydroxylation equivalent oxidant of step 1) is selected from NMO, K3Fe(CN)6One or more of (a).
In a preferred embodiment of the present invention, the organic solvent in step 1) is selected from one or more of tert-butanol, acetone, tetrahydrofuran, isopropanol, ethanol, ethyl acetate and dichloromethane.
In another preferred embodiment of the present invention, the oxidation reagent in step 2) is selected from one or more of sodium periodate and lead tetraacetate.
In a preferred embodiment of the present invention, the organic solvent in step 2) is selected from one or more of tert-butanol, acetone, tetrahydrofuran, isopropanol, ethanol, methanol, dichloromethane, ethyl acetate, and toluene.
The invention also provides a compound shown as the formula III,
Figure BSA0000201635790000031
wherein, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
The invention also provides a preparation method of the compound shown in the formula III, which is characterized in that the compound is prepared by carrying out dihydroxylation reaction on the compound shown in the formula IV,
Figure BSA0000201635790000032
wherein, in the compound shown in the formula III, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
In a preferred embodiment of the present invention, the method comprises the following steps:
adding a dihydroxylation reaction catalyst and a dihydroxylation reaction equivalent oxidant into an organic solvent or an organic solvent/water mixed solvent of a compound IV at 0-40 ℃, reacting, and continuously stirring for 30 min-6 h at 0-40 ℃. TLC showed complete conversion of starting material. Adding sodium thiosulfate aqueous solution to carry out quenching reaction, extracting with ethyl acetate, concentrating an organic phase, and purifying by column chromatography to obtain the compound shown in the formula III.
In a preferred embodiment of the present invention, the dihydroxylation catalyst is selected from one or more of osmium tetraoxide, potassium osmate and potassium permanganate.
In another preferred embodiment of the present invention, the dihydroxylation equivalent oxidant is selected from NMO, K3Fe(CN)6One or more of (a).
In another preferred embodiment of the present invention, the organic solvent is selected from one or more of tert-butanol, acetone, tetrahydrofuran, isopropanol, ethanol, ethyl acetate, and dichloromethane.
The invention also provides a preparation method of the compound shown in the formula II, which is characterized in that the compound shown in the formula III is prepared by oxidation reaction,
Figure BSA0000201635790000041
wherein, in the compound shown in the formula III, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
In a preferred embodiment of the present invention, the method comprises the following steps:
adding an oxidizing reagent into an organic solvent or an organic solvent/water mixed solvent of the compound III at 0-40 ℃, and continuously stirring for 30 min-6 h at 0-40 ℃ for reaction. TLC showed complete conversion of starting material. And (3) filtering the reaction liquid by using kieselguhr, washing a filter cake by using ethyl acetate, concentrating the filtrate, and purifying by column chromatography to obtain the compound shown as the formula II.
In a preferred embodiment of the present invention, the oxidation reagent is selected from one or more of sodium periodate and lead tetraacetate.
In another preferred embodiment of the present invention, the organic solvent is selected from one or more of tert-butanol, acetone, tetrahydrofuran, isopropanol, ethanol, methanol, dichloromethane, ethyl acetate, and toluene.
In another aspect, the present invention also provides a method for preparing eribulin, comprising preparing a compound of formula II according to the methods provided herein, and then preparing eribulin from the compound of formula II according to known methods, wherein reference is made to the following references: org.lett.2002, 4, 4435; org.lett.2009, 11, 4520; j.am.chem.soc.2009, 131, 15636; angew.chem.intl.ed.2009, 48, 2346; synlett.2013, 24, 323; synlett.2013, 24, 327; synlett.2013, 24, 333.
Abbreviation table:
Figure BSA0000201635790000042
Figure BSA0000201635790000051
the following table shows the structural formulae of the compounds mentioned in the examples
Figure BSA0000201635790000052
Detailed Description
The present invention will be explained in detail below with reference to specific examples so that those skilled in the art can more fully understand the present invention, and the specific examples are only for illustrating the technical scheme of the present invention and do not limit the present invention in any way.
Example 1: preparation of Compound III
Compound IV (20g, 31.90mmol, 1eq.) was dissolved in a mixed solvent of acetone (200mL) and water (50mL) at 0 deg.C, potassium osmate (117mg) and NMO (4.93g) were added sequentially, the reaction was stirred at 20 deg.C for 6h, TLC showed complete conversion of the starting material, and the reaction was quenched by addition of aqueous sodium thiosulfate. Extraction with ethyl acetate, concentration of the organic phase and purification by column chromatography gave 19.95g of compound III.
MS(ESI)m/z:661(M+H+).
1H NMR(400MHz,Chloroform-d)δ7.74(d,J=7.9Hz,2H),7.34(d,J=7.9Hz,2H),3.92-3.76(m,2H),3.76-3.60(m,5H),3.61-3.45(m,2H),3.44-3.35(m,2H),3.31(d,J=6.5Hz,3H),3.00(dd,J=7.5,3.9Hz,2H),2.68(q,J=7.6Hz,2H),2.50(q,J=6.1,4.6Hz,1H),2.02-1.84(m,2H),1.87-1.51(m,7H),1.20(t,J=7.6Hz,3H),0.80(dd,J=3.8,1.0Hz,18H),0.00(s,6H),-0.04(s,6H).
Example 2: preparation of Compound III
Compound IV (20g, 31.90mmol, 1eq.) was dissolved in a mixed solvent of tert-butanol (200mL) and water (50mL) at 20 ℃ and osmium tetroxide (95mg) and K were added in that order3Fe(CN)6(15.75g), the reaction was stirred at 40 ℃ for 2h, TLC showed complete conversion of starting material, and the reaction was quenched by addition of aqueous sodium thiosulfate. Extraction with ethyl acetate, concentration of the organic phase and purification by column chromatography gave 19.02g of compound III.
MS(ESI)m/z:661(M+H+).
1H NMR(400MHz,Chloroform-d)δ7.74(d,J=7.9Hz,2H),7.34(d,J=7.9Hz,2H),3.92-3.76(m,2H),3.76-3.60(m,5H),3.61-3.45(m,2H),3.44-3.35(m,2H),3.31(d,J=6.5Hz,3H),3.00(dd,J=7.5,3.9Hz,2H),2.68(q,J=7.6Hz,2H),2.50(q,J=6.1,4.6Hz,1H),2.02-1.84(m,2H),1.87-1.51(m,7H),1.20(t,J=7.6Hz,3H),0.80(dd,J=3.8,1.0Hz,18H),0.00(s,6H),-0.04(s,6H).
Example 3: preparation of Compound II
Compound III (18g, 27.23mmol, 1eq.) was dissolved in a mixed solvent of tetrahydrofuran (200mL) and water (200mL) at 0 ℃, sodium periodate (6.99g) was added, the reaction was stirred at 25 ℃ for 2h, TLC showed complete conversion of the starting material, the reaction was filtered through celite, and the filter cake was washed with ethyl acetate. The filtrate was concentrated and purified by column chromatography to give 16.4g of compound II. HPLC purity 99.3%.
MS(ESI)m/z:629(M+H+).
1H NMR(400MHz,Chloroform-d)δ9.63(t,J=1.4Hz,1H),7.83-7.60(m,2H),7.39-7.25(m,2H),3.94-3.81(m,2H),3.78-3.63(m,2H),3.49(dd,J=10.2,5.5Hz,1H),3.38(dd,J=10.2,5.5Hz,1H),3.29(s,3H),3.22(dd,J=14.1,5.1Hz,1H),3.00(dd,J=14.1,8.9Hz,1H),2.81(ddd,J=17.5,6.5,1.8Hz,1H),2.78(q,J=7.6Hz,2H),2.70(ddd,J=17.5,5.9,1.2Hz,1H),2.42(ddd,J=8.9,5.0,1.2Hz,1H),1.89(ddd,J=13.9,6.3,5.1Hz,1H),1.30(t,J=7.6Hz,3H),0.81(d,J=3.3Hz,18H),0.00(s,6H),-0.03(s,3H),-0.04(s,3H).
Example 4: preparation of Compound II
Compound III (18g, 27.23mmol, 1eq.) was dissolved in a mixed solvent of methanol (200mL) and water (200mL) at 20 ℃, sodium periodate (6.99g) was added, the reaction was stirred at 40 ℃ for 30min, TLC showed complete conversion of the starting material, the reaction solution was filtered through celite, and the filter cake was washed with ethyl acetate. The filtrate was concentrated and purified by column chromatography to give 16.6g of compound II. HPLC purity 99.4%.
MS(ESI)m/z:629(M+H+).
1H NMR(400MHz,Chloroform-d)δ9.63(t,J=1.4Hz,1H),7.83-7.60(m,2H),7.39-7.25(m,2H),3.94-3.81(m,2H),3.78-3.63(m,2H),3.49(dd,J=10.2,5.5Hz,1H),3.38(dd,J=10.2,5.5Hz,1H),3.29(s,3H),3.22(dd,J=14.1,5.1Hz,1H),3.00(dd,J=14.1,8.9Hz,1H),2.81(ddd,J=17.5,6.5,1.8Hz,1H),2.78(q,J=7.6Hz,2H),2.70(ddd,J=17.5,5.9,1.2Hz,1H),2.42(ddd,J=8.9,5.0,1.2Hz,1H),1.89(ddd,J=13.9,6.3,5.1Hz,1H),1.30(t,J=7.6Hz,3H),0.81(d,J=3.3Hz,18H),0.00(s,6H),-0.03(s,3H),-0.04(s,3H).
Example 5: preparation of Compound II
Compound III (15g, 22.69mmol, 1eq.) was dissolved in dichloromethane at 20 ℃, lead tetraacetate (20.12g) was added, the reaction was stirred at 30 ℃ for 6h, TLC showed complete conversion of the starting material, the reaction solution was filtered through celite, and the filter cake was washed with ethyl acetate. The filtrate was concentrated and purified by column chromatography to give 13.98g of compound II. HPLC purity 99.2%.
MS(ESI)m/z:629(M+H+).
1H NMR(400MHz,Chloroform-d)δ9.63(t,J=1.4Hz,1H),7.83-7.60(m,2H),7.39-7.25(m,2H),3.94-3.81(m,2H),3.78-3.63(m,2H),3.49(dd,J=10.2,5.5Hz,1H),3.38(dd,J=10.2,5.5Hz,1H),3.29(s,3H),3.22(dd,J=14.1,5.1Hz,1H),3.00(dd,J=14.1,8.9Hz,1H),2.81(ddd,J=17.5,6.5,1.8Hz,1H),2.78(q,J=7.6Hz,2H),2.70(ddd,J=17.5,5.9,1.2Hz,1H),2.42(ddd,J=8.9,5.0,1.2Hz,1H),1.89(ddd,J=13.9,6.3,5.1Hz,1H),1.30(t,J=7.6Hz,3H),0.81(d,J=3.3Hz,18H),0.00(s,6H),-0.03(s,3H),-0.04(s,3H).
Example 6; preparation of Compound II (comparative example, ozonization reaction)
Dissolving the compound IV (2g) in 20mL of isopropanol, cooling to-40 ℃, introducing ozone, stirring for 30min, adding triphenylphosphine (20g) to quench the reaction, stirring for 2h, directly concentrating the reaction solution, and carrying out column chromatography to obtain 1.8g of a compound II. HPLC purity 97.1%.
MS(ESI)m/z:629(M+H+).
1H NMR(400MHz,Chloroform-d)δ9.63(t,J=1.4Hz,1H),7.83-7.60(m,2H),7.39-7.25(m,2H),3.94-3.81(m,2H),3.78-3.63(m,2H),3.49(dd,J=10.2,5.5Hz,1H),3.38(dd,J=10.2,5.5Hz,1H),3.29(s,3H),3.22(dd,J=14.1,5.1Hz,1H),3.00(dd,J=14.1,8.9Hz,1H),2.81(ddd,J=17.5,6.5,1.8Hz,1H),2.78(q,J=7.6Hz,2H),2.70(ddd,J=17.5,5.9,1.2Hz,1H),2.42(ddd,J=8.9,5.0,1.2Hz,1H),1.89(ddd,J=13.9,6.3,5.1Hz,1H),1.30(t,J=7.6Hz,3H),0.81(d,J=3.3Hz,18H),0.00(s,6H),-0.03(s,3H),-0.04(s,3H).
Since the present invention has been described in terms of specific embodiments thereof, certain modifications and equivalent variations will be apparent to those of ordinary skill in the art and are intended to be included within the scope of the present invention.

Claims (8)

1. A compound shown as a formula III in the specification,
Figure FSA0000201635780000011
wherein, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
2. A preparation method of a compound shown in a formula III is characterized in that the compound is prepared by carrying out dihydroxylation reaction on a compound shown in a formula IV,
Figure FSA0000201635780000012
wherein, in the compound shown in the formula III, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
3. A preparation method of a compound shown in a formula II is characterized in that the compound is prepared by oxidation reaction of a compound shown in a formula III,
Figure FSA0000201635780000013
wherein, in the compound shown in the formula III, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
4. A preparation method of a compound shown as a formula II is characterized by comprising the following steps,
Figure FSA0000201635780000014
1) carrying out dihydroxylation reaction on the compound shown as the formula IV to obtain a compound shown as a formula III;
2) carrying out oxidation reaction on the compound shown in the formula III to obtain a compound shown in a formula II;
wherein, in the compound shown in the formula III, the configuration of the chiral center at the C27 position can be R configuration, S configuration or racemic configuration.
5. The method for preparing a compound represented by formula II according to claim 4, wherein the dihydroxylation reaction catalyst in step 1) is selected from one or more of osmium tetraoxide, potassium osmate and potassium permanganate.
6. The method of claim 4, wherein the dihydroxylation equivalent oxidant of step 1) is NMO or K3Fe(CN)6One or more of (a).
7. The method according to claim 4, wherein the oxidation reagent in step 2) is selected from one or more of sodium periodate and lead tetraacetate.
8. A preparation method of eribulin is characterized by comprising the step of preparing eribulin from a compound shown in formula III.
CN202010090205.9A 2020-02-04 2020-02-04 Intermediate for preparing eribulin and preparation method thereof Withdrawn CN113214307A (en)

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Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20180009825A1 (en) * 2016-07-06 2018-01-11 Apicore Us Llc Methods of making eribulin mesylate
CN108659031A (en) * 2017-03-28 2018-10-16 上海时莱生物技术有限公司 A kind of intermediate and preparation method thereof being used to prepare eribulin
CN108948064A (en) * 2017-05-17 2018-12-07 上海时莱生物技术有限公司 A kind of eribulin intermediate and preparation method thereof
WO2019102490A1 (en) * 2017-11-21 2019-05-31 Natco Pharma Limited Intermediates for the preparation of eribulin thereof

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20180009825A1 (en) * 2016-07-06 2018-01-11 Apicore Us Llc Methods of making eribulin mesylate
CN108659031A (en) * 2017-03-28 2018-10-16 上海时莱生物技术有限公司 A kind of intermediate and preparation method thereof being used to prepare eribulin
CN108948064A (en) * 2017-05-17 2018-12-07 上海时莱生物技术有限公司 A kind of eribulin intermediate and preparation method thereof
WO2019102490A1 (en) * 2017-11-21 2019-05-31 Natco Pharma Limited Intermediates for the preparation of eribulin thereof

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Application publication date: 20210806