CN112680465A - Gene mutant for modifying fatty acid component of soybean and application thereof - Google Patents

Abstract

The invention relates to a gene mutant for modifying fatty acid components of soybean and application thereof, belonging to the field of plant genetic engineeringFAD2‑1BMutation of a gene; the multiple gene mutant is generatedFAD2‑1BJoint mutation of a gene and another geneFAD2‑1AGenes andFAD3Aone or two of the genes;FAD2‑1Athe gene mutation isReplacing 18 bases at 79 th to 96 th positions of the gene with 28 bases;FAD2‑1Bthe gene mutation is to mutate A at the 511 th site of the gene into G, and simultaneously insert A between the 515 th site and the 516 th site;FAD3Athe gene mutation is a deletion of 5 bases at positions 53 to 57 of the gene. The invention provides a brand new approach for the quality breeding work of oil crops with high oleic acid content, and has good application prospect.

Description

Gene mutant for modifying fatty acid component of soybean and application thereof

Technical Field

The invention belongs to the technical field of plant genetic engineering, and particularly relates to a genetic mutant for modifying fatty acid components of soybean and application thereof.

Background

Soybean (Glycine mas l. merrill) originated in china, is one of the world's important oil and commercial crops, and is also the major source of human vegetable oil and vegetable protein. With the improvement of living standard and dietary structure, people's demand for high-quality soybean oil is increasing, and the cultivation of high-quality soybean becomes one of the important targets of soybean breeding. Soybean oil accounts for about 40% of the consumption of edible vegetable oil in China, the components of soybean fatty acid and the proportion thereof determine the quality of soybean oil, and the soybean oil mainly comprises 5 fatty acids, namely palmitic acid (16:0), stearic acid (18:0), oleic acid (18:1), linoleic acid (18:2) and linolenic acid (18:3), which respectively account for about 10%, 4%, 18%, 55% and 13% of the total amount of the soybean fatty acid. Wherein, the stearic acid and the palmitic acid are saturated fatty acids; oleic acid, linoleic acid and linolenic acid are unsaturated fatty acids. Saturated fatty acid is not easy to be digested and absorbed by human body, and is easy to cause obesity and cardiovascular and cerebrovascular diseases. Linoleic acid and linolenic acid are polyunsaturated fatty acids, are poor in stability, are easily oxidized during high-temperature processing, reduce the nutritional value, influence the quality of oil, and easily generate trans-fatty acids harmful to human bodies in industrial hydrogenation reaction. The oleic acid is used as monounsaturated fatty acid, has stable property and strong antioxidation, and can reduce harmful cholesterol and keep beneficial cholesterol in the lipid metabolism of a human body, thereby slowing down atherosclerosis and effectively preventing the occurrence probability of cardiovascular diseases. Therefore, oleic acid is the preferred fatty acid for balancing the contradiction between the nutrition and the chemical stability of the oil. Therefore, increasing the relative content of oleic acid and increasing the ratio of oleic acid to linoleic acid has become one of the important targets for improving and breeding soybean quality.

In the fatty acid synthesis pathway, Δ 12-fatty acid desaturase (FAD 2) is a key enzyme that catalyzes the conversion of oleic acid to linoleic acid. It has been shown that inhibition of expression of FAD2 gene, thereby reducing the activity of fatty acid dehydrogenase in seeds, inhibits the conversion of oleic acid to linoleic acid, thereby increasing oleic acid in seeds. At present, FAD2 genes in Arabidopsis, cotton, sunflower, soybean, etc. plants have been cloned. Two types of FAD2 genes, namely FAD2-1 and FAD2-2(FAD2-2A, FAD2-2B, FAD2-2C, FAD2-2D and FAD2-2E) exist in soybean, wherein FAD2-1 comprises FAD2-1A and FAD2-1B, and the two genes are specifically expressed in seeds and are two main genes determining the content of oleic acid in the seeds.

Meanwhile, another common means for improving the quality of soybean oil is to reduce the proportion of polyunsaturated fatty acids by reducing the content of linolenic acid, and FAD3 is a key enzyme catalyzing the conversion of linoleic acid to linolenic acid. The soybean FAD3 gene family consists of three members, FAD3A, FAD3B, and FAD3C, respectively. Because the FAD3A gene is expressed in a large amount in the development process of soybean seeds, the FAD3A gene is a main factor influencing the content of the linolenic acid in the soybean oil.

The CRISPR/Cas9 system is an accurate, convenient and efficient biological genome editing method developed in recent years. Targeted editing of the target gene is achieved by guide RNA-mediated and cleavage of the Cas9 protein. The technology provides a new idea for the research of gene functions, and is more widely applied to the fields of research and development of biological medicines, genetic improvement of crops and the like. At present, the CRISPR/Cas9 system has been successfully applied to plants such as Arabidopsis, rice, corn, wheat and soybean. The CRISPR/Cas9 gene editing technology can quickly and conveniently realize targeted mutation of genes, can more efficiently aggregate certain excellent agronomic traits of crops, and provides a novel innovative and efficient way for crop breeding.

Disclosure of Invention

In view of the above problems, the first objective of the present invention is to provide a genetic mutant for modifying fatty acid components of soybean, and the second objective is to provide an application of the genetic mutant in obtaining high oleic acid oil crops.

In order to achieve the purpose, the invention adopts the specific scheme that:

the genetic mutant is used for modifying fatty acid components of soybean, the mutant is a single-gene mutant or a multi-gene mutant, and the single-gene mutant is subjected to FAD2-1B gene mutation; the multi-gene mutant is a combined mutation of a FAD2-1B gene and other genes, wherein the other genes are one or two of a FAD2-1A gene and a FAD3A gene;

the mutation site of the FAD2-1A gene is obtained by replacing 18 bases at the 523-540 th position of the gene with 28 bases, wherein the nucleotide sequence of the gene is shown as SEQ ID NO. 06; the mutation site of the FAD2-1B gene is characterized in that the 265 th A of the gene with the nucleotide sequence shown as SEQ ID NO. 07 is mutated into G, and an A base is inserted between the 269 th and 270 th positions; the mutation site of the FAD3A gene is the deletion of 5 bases from the 53 th position to the 57 th position of the gene with the nucleotide sequence shown as SEQ ID NO: 08.

Specifically, the mutation sites of the FAD2-1A gene are that CC at the 523-524 position of the gene shown in SEQ ID NO. 06 is replaced by TA, TT at the 526-527 position of the gene is replaced by AA, AAAAT is inserted between the 529-530 position, ATA is inserted between the 531-532 position, A is inserted between the 532-533 position and the 539-540 position of the gene is replaced by TCT.

The invention also provides application of the gene mutant in obtaining high oleic acid oil crops.

Has the advantages that:

the invention realizes the fixed-point editing of GmFAD2-1A, GmFAD2-1B and GmFAD3A genes by using a CRISPR/Cas9 gene editing system, obtains the mutation site information of mutation of the GmFAD2-1A, GmFAD2-1B and GmFAD3A genes simultaneously by sequencing and gene comparison of a plant with remarkably increased oleic acid content and homozygous mutation of three genes, indicates the fixed-point editing site of the CRISPR/Cas9 gene editing system, and simultaneously indicates that a function-deletion mutant obtained under the mutation condition can effectively inhibit the conversion of oleic acid to linoleic acid and linoleic acid to linolenic acid in a fatty acid synthesis pathway, so that the oleic acid content is remarkably increased, provides a brand-new pathway for quality breeding work of soybeans or other oil crops with high oleic acid content, and has good application prospects.

Drawings

FIG. 1 is a schematic diagram of construction of a dual-target CRISPR/Cas9 binary expression vector KP; wherein RB/LB represents the left and right T-DNA borders; KASIip is the promoter of Arabidopsis KASII gene; rbcS-E9t is a terminator of rbcS E9 gene; 2-sgRs are expression components consisting of two sgRNAs; zCas9 is a maize codon optimized Cas9 protein gene; u6-26p and U6-29p are promoters of two Arabidopsis U6 genes; u6-26t is the terminator of U6-26 gene; at2S3p is a promoter of Arabidopsis thaliana 2S3 gene; mCherry is mCherry fluorescent protein gene; NOSt is a terminator of NOS gene; g10evo epsps is a glyphosate resistance gene;

FIG. 2 is a schematic diagram of the construction of a dual-target CRISPR/Cas9 binary expression vector EP; wherein RB/LB represents the left and right T-DNA borders; EC1.2p is the promoter of EC1.2 gene; rbcS-E9t is a terminator of rbcS E9 gene; 2-sgRs are expression components consisting of two sgRNAs; zCas9 is a maize codon optimized Cas9 protein gene; u6-26p and U6-29p are promoters of two Arabidopsis U6 genes; u6-26t is the terminator of U6-26 gene; at2S3p is a promoter of Arabidopsis thaliana 2S3 gene; mCherry is mCherry fluorescent protein gene; NOSt is a terminator of NOS gene; g10evo epsps is a glyphosate resistance gene;

FIG. 3 is a graph comparing the fatty acid composition of soybean grain and the parent (CK) of the T2 generation of KP-1 strain in KP transgenic strains; wherein C16:0, C18:0, C18:1, C18:2 and C18:3 respectively represent palmitic acid, stearic acid, oleic acid, linoleic acid and linolenic acid;

FIG. 4 is a graph comparing the fatty acid composition of soybean grain and the parent (CK) of the T2 generation of KP-2 strain in KP transgenic strains; wherein C16:0, C18:0, C18:1, C18:2 and C18:3 respectively represent palmitic acid, stearic acid, oleic acid, linoleic acid and linolenic acid;

FIG. 5 is a graph comparing the fatty acid composition of soybean grain and the parent (CK) of the T2 generation of KP-3 strain in KP transgenic strains; wherein C16:0, C18:0, C18:1, C18:2 and C18:3 respectively represent palmitic acid, stearic acid, oleic acid, linoleic acid and linolenic acid;

FIG. 6 is a graph comparing the fatty acid composition of soybean seeds and the parent (CK) of the T2 generation of KP-6 and KP-8 lines in KP transgenic lines; wherein C16:0, C18:0, C18:1, C18:2 and C18:3 respectively represent palmitic acid, stearic acid, oleic acid, linoleic acid and linolenic acid;

FIG. 7 is the polyacrylamide gel electrophoresis analysis result of FAD3A gene mutation sites in T2 generation individuals of 5 KP transgenic lines (KP-3, KP-8, KP-6, KP-1 and KP-2); illustration of the numerical references in the figures: KP-3-42 and KP-3-41 are two T1 generation plants of KP-3 strain, while 3, 9, 12 and 13 are T2 generation single plants of KP-3-42, and 4, 8, 9 and 10 are T2 generation single plants of KP-3-41, and the numerical labeling mode of other strains is similar; WT in the figure represents the parent (Wandou 28), M is DNA Marker (the two bands shown in the figure are 250bp and 500bp, respectively); for a detailed description of the results see [0059 ];

FIG. 8 is a sequence feature diagram of FAD2-1A, FAD2-1B and FAD3A gene mutation sites in three individual strains of KP-3-42-3 progeny; (A) for sequence comparison analysis of FAD2-1A gRNA, CDS (coding region) and PCR amplification products of FAD2-1A genes of three individuals, the uppermost part represents a genome structure diagram of soybean FAD2-1A, and the rightmost part is a sequencing diagram of PCR amplification products of FAD2-1A genes of three individuals (because the PCR amplification products of the three individuals are completely identical, only one sequencing peak diagram is taken as a representative); (B) and (C) is a sequence comparison analysis chart of PCR amplification products of FAD2-1B and FAD3A genes of three individuals, and the rest of the description is similar to the chart of (A);

FIG. 9 is a sequence feature diagram of mutation sites of FAD2-1A, FAD2-1B and FAD3A genes in three individual strains of KP-1-25-7 progeny; the rest of the description is similar to that of fig. 8;

FIG. 10 is the result of agarose gel electrophoresis of PCR amplification products of Cas9 transgene in T2 generation individuals of 5 KP transgenic lines (KP-3, KP-8, KP-6, KP-1 and KP-2); illustration of the numerical references in the figures: KP-3-42 and KP-3-41 are two T1 generation plants of KP-3 strain, while 3, 9, 12 and 13 are T2 generation single plants of KP-3-42, and 4, 8, 9 and 10 are T2 generation single plants of KP-3-41, and the numerical labeling mode of other strains is similar; in the figure, CK1 represents a negative control, i.e., a parent without Cas9 transgene (wan bean 28), CK2 represents a positive control, i.e., a plant containing Cas9 transgene, M is a DNA Marker (the size of the bottommost band is 250bp, then 500bp, 750bp, 1000bp, 1500bp, etc.), the PCR amplification product of Cas9 transgene is a band of more than 500bp, and the band of less than 250bp is a primer dimer, but not the PCR amplification product of Cas9 transgene.

Detailed Description

Carrying out site-directed editing on soybean FAD2-1A, FAD2-1B and FAD3A genes by using a CRISPR/Cas9 system to obtain a high-oleic acid soybean strain, comprising the following steps of:

the method comprises the following steps: constructing a CRISPR/Cas9 gene editing vector: replacing the hygromycin resistance screening marker in the original editing carrier with a glyphosate screening marker; primers ZYP22(SEQ ID NO:01) and ZYP23(SEQ ID NO:02) were designed to clone the promoter S1(SEQ ID NO:03) of the Arabidopsis AtKAS II gene to replace the EC1.2 promoter in the original editing vector to drive expression of the Cas9 gene, the vector driven by the EC1.2 promoter was named EP, and the vector driven by the AtKASII promoter was named KP.

Step two: gRNA target selection: comparing gene sequences of the soybean FAD2-1A and FAD2-1B, manually designing targets in similar regions, and selecting a target site S2(SEQ ID NO: 04); the gene sequences of soybean FAD3A, FAD3B and FAD3C are compared, a target point is manually designed in the sequence specific region of soybean FAD3A, and a target site S3(SEQ ID NO:05) is selected. Among them, the sequences of the soybean FAD2-1A, FAD2-1B and FAD3A genes were cloned on the basis of information provided by reference to NCBI database, and the actual sequences thereof were S4(SEQ ID NO:06), S5(SEQ ID NO:07) and S6(SEQ ID NO:08), respectively.

Step three: vector-related primers ZYP40(SEQ ID NO:09), ZYP41(SEQ ID NO:10), ZYP42(SEQ ID NO:11) and ZYP43(SEQ ID NO:12) were constructed based on the designed target site synthesis, as shown in Table 1.

Step four: the construction procedure of the double-target CRISPR/Cas9 gene editing vector (as shown in fig. 1 and fig. 2) is as follows:

(1) gRNA expression cassette assembly: PCR amplification of four-linker primers (ZYP40, ZYP41, ZYP42 and ZYP43) was carried out using pCBC-DT1T2 as a template with 100-fold high fidelity enzyme dilution, and PCR products were recovered by purification.

(2) Assembling the target and the vector: and (3) simultaneously, digesting the amplification product in the step (1) with BsaI, and assembling the amplification product and the vector EP, KP and T4 ligase constructed in the step I to obtain the double-target CRISPR/Cas9 gene editing vector.

(3) And transforming escherichia coli competence, screening by a Kan plate, and identifying colony PCR.

Step five: and step four, identifying the correct monoclonal, extracting the plasmid, sequencing correctly, and transforming the agrobacterium.

Step six: and D, utilizing the agrobacterium-mediated soybean Transformation obtained in the step five, wherein the Transformation method refers to an agrobacterium-mediated soybean cotyledon node Transformation method used by Plant Transformation Facility in the Iowa State University in the United states.

Step seven: and (3) carrying out fatty acid component analysis on T2 generation transgenic soybean seeds, and comparing with wild plants to obtain transgenic plant strains with higher oleic acid content.

Step eight: and (3) selecting soybean seeds with high oleic acid content in each strain to plant, performing molecular identification and sequencing analysis, and screening to obtain a non-transgenic plant of which the genes of the soybean FAD2-1A, FAD2-1B and FAD3A are mutated simultaneously and do not contain the Cas9 gene.

The sequence table of the primers involved in the above steps is shown in table 1 below.

Table 1: primer sequence table.

The experimental result proves that the gene editing efficiency of the CRISPR/Cas9 system in a soybean transformation system can be greatly improved by using the promoter of the Arabidopsis AtKASII gene to start the expression of the Cas9 protein gene compared with the promoter of the EC1.2 gene; after soybean FAD2-1A, FAD2-1B and FAD3A genes are edited by a CRISPR/Cas9 gene editing system, homozygous mutation occurs on the three genes, and the oleic acid content of the obtained soybean mutant is remarkably increased compared with that of a parent.

The technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to the embodiments of the present invention.

Example 1: acquisition of transgenic Soybean plants

Electric shock transformation of agrobacterium tumefaciens: and adding 1mL of each of the constructed CRISPR/Cas9 gene editing vectors EP and KP into the competent cell of the Agrobacterium tumefaciens EHA105, mixing uniformly, and transferring the mixture into an electric shock cup. The electric shock cup is put into a sample groove of an electric shock instrument, and proper voltage is selected according to the electrode spacing size of the electric shock cup to carry out electric shock (2.0mm, 2500V). 1mL of YEP liquid culture medium without antibiotics is added into the agrobacterium tumefaciens after electric shock is finished, mixed evenly and then transferred into a sterilized 1.5mL centrifuge tube, and cultured for about 3 hours at 28 ℃. The bacterial liquid was centrifuged at 4000rpm for 3min and the supernatant was discarded. Uniformly mixing the residual YEP liquid culture medium and the precipitated thalli, uniformly coating the mixture on a YEP solid culture medium plate containing 12mg/L rifampicin and 50mg/L kanamycin, placing the mixture in an incubator at 28 ℃ from the front side upwards for 1 hour until the bacteria liquid is completely absorbed, and then carrying out inverted culture for about 36-48 hours until bacterial colonies appear. And (3) picking a single colony (which is confirmed to be a clone containing EP and KP plasmids respectively through PCR detection) and shaking the bacteria for 24h, namely obtaining the agrobacterium tumefaciens infection liquid. The resulting bacterial liquid was stored at-80 ℃ in a mixture of 1:1 by volume and 50% glycerol.

Preparation and co-culture of explants: the agrobacterium is utilized to mediate the transformation of the soybean, and the transformation method is referred to the American Iowa SAgrobacterium-mediated Transformation of soybean cotyledonary nodes (2004; Euphytoca 136:167-179) was used by the site University, Plant Transformation Facility. The soybean seeds are sterilized by chlorine dry method for 16h, sowed on a germination culture medium and irradiated by light at 28 ℃ (photoperiod is 18h/6h, and illumination intensity is 140 mu mol m^-2s^-1) 12-15 h. Placing the imbibed soybean seeds on a sterile absorbent paper, longitudinally cutting the soybean seeds along the hilum into two halves by using a scalpel, removing seed coats, and taking two petals containing hypocotyls and cotyledons as explants. The Agrobacterium resuspension was poured into a clean sterile petri dish, approximately 50 explants were placed and infected for 1h at room temperature. And taking out the explants, drying the explants by using sterile absorbent paper, and placing the explants on a co-culture medium containing sterile filter paper, wherein 7-10 explants are placed in each dish. And (4) sealing, and performing dark co-culture in an incubator at 23 ℃ for 3-5 days.

Screening and regenerating: after co-cultivation, explants are transferred to shoot induction medium without the selection agent. Sealing with air permeable adhesive tape and transferring to culture room (24 deg.C, photoperiod 18h/6h, illumination intensity 140 μmol m)^-2s^-1) One week after culture, explants were transferred to shoot induction medium containing the selection agent glyphosate (20mg/L) for two weeks, after two weeks the shoot induction medium was changed once and selection was continued for two weeks with the same concentration of glyphosate. After 4 weeks of shoot induction, the remaining cotyledons were excised and transferred to shoot elongation medium and screened with 5mg/L glyphosate. The culture conditions are the same as the cluster bud induction process, the culture is carried out for 4-8 weeks, and the bud elongation culture medium is replaced every 2 weeks. Shoots extending 3cm were excised, dipped in indolebutyric acid (IBA) for 3min and inserted into rooting medium. After 1-2 weeks, when the root is about 2cm long, taking out the rooted seedling from the culture medium, cleaning the culture medium remained at the root, transferring the seedling into soil, and transferring the seedling to a greenhouse for culture.

According to this example, a total of 4 EP transgenic positive lines and 8 KP transgenic positive lines were obtained.

Example 2: screening of mutated soybean seeds by fatty acid component analysis

The fatty acid component analysis of the obtained T2 generation soybean seeds was carried out by referring to the method of Zheng et al (2003; Plant Cell 15:1872-1887) as follows:

(1) fixing soybean seeds, cutting out 1/4 cotyledons (about 40mg) at one end far away from the hilum along the direction parallel to the hilum with a clean blade, cutting, placing in a 2ml centrifugal tube, adding glass beads, and adding internal standard C17:0 (dissolved in n-hexane, ready for use). The rest part of the seeds are planted in a prepared substrate (the depth is about 1cm), and the hilum of the seeds faces downwards for subsequent molecular identification;

(2) covering the cover tightly, performing crushing treatment in a tissue crusher, and centrifuging;

(3) transferring the supernatant into an Agilent vial, and performing methyl esterification treatment;

(4) and after the methylation is finished, adding NaCl solution and normal hexane with proper concentration to sample for analysis.

The analysis result shows that the oleic acid content of 4 EP transgenic lines is not obviously different from that of the wild type, while the oleic acid content of 5 lines (KP-1, KP-2, KP-3, KP-6 and KP-8) in 8 KP transgenic lines is obviously higher than that of the wild type, wherein the average value of the line with the highest oleic acid content reaches 84.71%, and the ratio of oleic acid to linoleic acid is 76.32 (the ratio of oleic acid to linoleic acid of the wild type is only 0.47) (fig. 3-fig. 6). The result shows that the expression of the Cas9 protein gene is driven by the promoter of the Arabidopsis KASII gene in a soybean transgenic system, so that the gene editing efficiency of the CRISPR/Cas9 editing system can be greatly improved.

Example 3: detection of gene editing sites of FAD2-1A, FAD2-1B and FAD3A of transgenic positive plants, and detection of existence of Cas9 protein gene

After fatty acid component analysis, seeds with the oleic acid content of more than 80% are selected for planting, and the oleic acid content of different seeds in the same selected strain is the same or similar. Obtaining KP transgenic T2 generation plants, and extracting the genome DNA of KP transgenic T2 generation plant leaves.

Then, using the genomic DNA as a template, primers were designed so that the amplification product was a sequence of 150-250bp around the target sequence, and a conventional PCR reaction was performed. The primers were designed as shown in Table 2 below.

Table 2: primer sequence table.

And finally, detecting whether the target sequence is mutated or not by adopting a polyacrylamide gel electrophoresis method for the PCR product. The specific electrophoresis method is as follows:

prepare 40ml of 8% PAGE gel: 10.67ml of a 30% acrylamide/methylene bisacrylamide solution (29:1) and 4ml of 10 XTBE were added to a constant volume of 40ml, and after shaking up, 400. mu.l of 10% APS (ammonium persulfate) and 20. mu.l of TEMED were added and mixed well. The prepared glue solution is slowly added along one end of the glass plate, so that the glue surface is slightly higher than the glue making frame, and a comb with 50 holes is inserted immediately. After the gel is solidified, 1 × TBE is added into the electrophoresis tank until the liquid level reaches the designated height. Mu.l of PCR product was added to each gel well, and electrophoresis was performed at 200V for an appropriate electrophoresis time depending on the size of DNA. After the electrophoresis is stopped, the gel is washed by tap water for a plurality of times, 0.1% silver nitrate solution is added, the gel is placed in a shaking table for 10min and washed by tap water for a plurality of times, and color developing solution is added to continue to react on the shaking table for 10min until color development is achieved.

Meanwhile, the presence or absence of the Cas9 protein gene in T2 generation plants is detected by adopting conventional PCR. Genome DNA is used as a template, a primer is designed as a Cas9 protein gene specific sequence, and a PCR product is detected by adopting 1% agarose gel electrophoresis.

In FIG. 7, taking polyacrylamide gel electrophoresis detection of FAD3A as an example, a plant containing only a PCR product having the same mobility as that of the wild-type band was judged as a plant having no mutation or having only a base substitution (e.g., KP-8-66-3 in FIG. 7), a plant containing both a band having the same mobility as that of the wild-type band and a band having a different mobility from that of the wild-type band was judged as a heterozygous mutant plant (e.g., KP-1-26-2 in FIG. 7), and a plant containing only a band having a different mobility from that of the wild-type band was judged as a homozygous mutant plant (e.g., KP-3-42-3 in FIG. 7). The homozygosity of mutation sites of FAD2-1A and FAD2-1B genes is identified by the same polyacrylamide gel electrophoresis detection analysis method. According to the polyacrylamide gel electrophoresis detection result and the analysis result of the oleic acid content, a few individuals with the same genotype (mobility of PCR products) are selected, and the FAD2-1A, FAD2-1B and FAD3A genes are further subjected to PCR amplification and sequencing analysis, wherein the FAD2-1A, FAD2-1B and FAD3A genes comprise offspring of KP-3-42 and KP-1-25 strains (the oleic acid content in the offspring is up to 85-57%, and the oleic acid content in common soybeans is about 25%). Then, the sequencing result is compared with the nucleic acid sequences of wild type FAD2-1A, FAD2-1B and FAD3A genes, and the analysis result shows that the three genes in the offspring of KP-3-42 and KP-1-25 (respectively from KP-3 strain and KP-1 strain) are homozygously mutated, and the sequence information of the mutation sites is shown in FIG. 8 and FIG. 9. Wherein, for a three-gene homozygous mutant plant KP-3-42-3, mutations occur on GmFAD2-1A, GmFAD2-1B and GmFAD3A genes, which are specifically as follows:

18 bases at the 523-540 th site of the GmFAD2-1A gene with the nucleotide sequence shown as SEQ ID NO. 06 are replaced by 28 bases; specifically, the mutation sites of the FAD2-1A gene are that CC at the 523-524 position of the gene shown in SEQ ID NO. 06 is replaced by TA, TT at the 526-527 position of the gene is replaced by AA, AAAAT is inserted between the 529-530 position, ATA is inserted between the 531-532 position, A is inserted between the 532-533 position and the 539-540 position of the gene is replaced by TCT.

A at the 265 th site of a GmFAD2-1B gene with the nucleotide sequence shown as SEQ ID NO. 07 is mutated into G, and an A base is inserted between the 269 th site and the 270 th site;

the deletion of 5 bases AGGAA is generated from the 53 th position to the 57 th position of the GmFAD3A gene with the nucleotide sequence shown as SEQ ID NO. 08.

The Cas9 protein gene detection result shows (fig. 10), 22 out of 69 detected T2 generation plants do not carry the Cas9 gene, and two homozygous mutant plants obtained by screening do not carry the Cas9 gene at the same time, namely non-transgenic plants.

It should be noted that the above-mentioned embodiments illustrate rather than limit the scope of the invention, which is defined by the appended claims. It will be apparent to those skilled in the art that certain insubstantial modifications and adaptations of the present invention can be made without departing from the spirit and scope of the invention.

SEQUENCE LISTING

<110> Zhejiang university of agriculture and forestry, Hangzhou Ruifeng Biotechnology GmbH

<120> genetic mutant for modifying fatty acid component of soybean and application thereof

<130> 1

<160> 12

<170> PatentIn version 3.3

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<213> Artificial Synthesis

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ctctctctct ctctctctgt ctgtttgttt cagagaagga tttttggcgt ctccacgcac 1380

gatttaacgc atcgaagctc tctgcacgct tcctgaaaga gagagagaag agagagatcg 1440

cagatcgatt tctcttaaat ctctcgtgaa tcccatttgc cttctctctg ctagattctc 1500

tcttcttctc ttcacccatt tctcgctttc tcctttgttc tctcatctgg gttcttctca 1560

aagcctcttc ctttttatgc c 1581

<210> 4

<211> 20

<212> DNA

<213> Artificial Synthesis

<400> 4

ttcactgttg gccaactcaa 20

<210> 5

<211> 20

<212> DNA

<213> Artificial Synthesis

<400> 5

aaaggaagct tttgatccca 20

<210> 6

<211> 1584

<212> DNA

<213> Soybean

<400> 6

atggtaaatt aaattgtgcc tgcacctcgg gatatttcat gtggggttca tcatatttgt 60

tgaggaaaag aaactcccga aattgaatta tgcatttata tatccttttt catttctaga 120

tttcctgaag gcttaggtgt aggcacctag ctagtagcta caatatcagc acttctctct 180

attgataaac aattggctgt aatgccgcag tagaggacga tcacaacatt tcgtgctggt 240

tactttttgt tttatggtca tgatttcact ctctctaatc tctccattca ttttgtagtt 300

gtcattatct ttagattttt cactacctgg tttaaaattg agggattgta gttctgttgg 360

tacatattac acattcagca aaacaactga aactcaactg aacttgttta tactttgaca 420

cagggtctag caaaggaaac aacaatggga ggtagaggtc gtgtggccaa agtggaagtt 480

caagggaaga agcctctctc aagggttcca aacacaaagc caccattcac tgttggccaa 540

ctcaagaaag caattccacc acactgcttt cagcgctccc tcctcacttc attctcctat 600

gttgtttatg acctttcatt tgccttcatt ttctacattg ccaccaccta cttccacctc 660

cttcctcaac ccttttccct cattgcatgg ccaatctatt gggttctcca aggttgcctt 720

ctcactggtg tgtgggtgat tgctcacgag tgtggtcacc atgccttcag caagtaccaa 780

tgggttgatg atgttgtggg tttgaccctt cactcaacac ttttagtccc ttatttctca 840

tggaaaataa gccatcgccg ccatcactcc aacacaggtt cccttgaccg tgatgaagtg 900

tttgtcccaa aaccaaaatc caaagttgca tggttttcca agtacttaaa caaccctcta 960

ggaagggctg tttctcttct cgtcacactc acaatagggt ggcctatgta tttagccttc 1020

aatgtctctg gtagacccta tgatagtttt gcaagccact accaccctta tgctcccata 1080

tattctaacc gtgagaggct tctgatctat gtctctgatg ttgctttgtt ttctgtgact 1140

tactctctct accgtgttgc aaccctgaaa gggttggttt ggctgctatg tgtttatggg 1200

gtgcctttgc tcattgtgaa cggttttctt gtgactatca catatttgca gcacacacac 1260

tttgccttgc ctcattacga ttcatcagaa tgggactggc tgaagggagc tttggcaact 1320

atggacagag attatgggat tctgaacaag gtgtttcatc acataactga tactcatgtg 1380

gctcaccatc tcttctctac aatgccacat taccatgcaa tggaggcaac caatgcaatc 1440

aagccaatat tgggtgagta ctaccaattt gatgacacac cattttacaa ggcactgtgg 1500

agagaagcga gagagtgcct ctatgtggag ccagatgaag gaacatccga gaagggcgtg 1560

tattggtaca ggaacaagta ttga 1584

<210> 7

<211> 1324

<212> DNA

<213> Soybean

<400> 7

atggtcatga tttcactctc tctaatctgt cacttccctc cattcatttt gtacttctca 60

tatttttcac ttcctggttg aaaattgtag ttctcttggt acatactagt attagacatt 120

cagcaacaac aactgaactg aacttcttta tactttgaca cagggtctag caaaggaaac 180

aataatggga ggtggaggcc gtgtggccaa agttgaaatt cagcagaaga agcctctctc 240

aagggttcca aacacaaagc caccgttcac tgttggccaa ctcaagaaag ccattccacc 300

gcactgcttt cagcgttccc tcctcacttc attgtcctat gttgtttatg acctttcatt 360

ggctttcatt ttctacattg ccaccaccta cttccacctc ctccctcacc ccttttccct 420

cattgcatgg ccaatctatt gggttctcca aggttgcatt cttactggcg tgtgggtgat 480

tgctcacgag tgtggtcacc atgccttcag caagtaccca tgggttgatg atgttgtggg 540

tttgaccgtt cactcagcac ttttagtccc ttatttctca tggaaaataa gccatcgccg 600

ccaccactcc aacacgggtt cccttgaccg tgatgaagtg tttgtcccaa aaccaaaatc 660

caaagttgca tggtacacca agtacctgaa caaccctcta ggaagggctg cttctcttct 720

catcacactc acaatagggt ggcctttgta tttagccttc aatgtctctg gcagacccta 780

tgatggtttt gctagccact accaccctta tgctcccata tattcaaatc gtgagaggct 840

tttgatctat gtctctgatg ttgctttgtt ttctgtgact tacttgctct accgtgttgc 900

aactatgaaa gggttggttt ggctgctatg tgtttatggg gtgccattgc tcattgtgaa 960

cggttttctt gtgaccatca catatctgca gcacacacac tatgccttgc ctcactatga 1020

ttcatcagaa tgggattggc tgaggggtgc tttggcaact atggacagag attatgggat 1080

tctgaacaag gtgtttcacc acataactga tactcatgtg gctcaccatc ttttctctac 1140

aatgccacat taccatgcaa cggaggcaac caatgcaatg aagccaatat tgggtgagta 1200

ctaccgattt gatgacacac cattttacaa ggcactgtgg agagaagcaa gagagtgcct 1260

ctatgtggag ccagatgaag gaacatccga gaagggcgtg tattggtaca ggaacaagta 1320

ttga 1324

<210> 8

<211> 3868

<212> DNA

<213> Soybean

<400> 8

atggttaaag acacaaagcc tttagcctat gctgctaata atggatacca aaaggaagct 60

tttgatccca gtgctcctcc accgtttaag attgcagaaa tcagagttgc aataccaaaa 120

cattgctggg tcaagaatcc atggagatcc ctcagttatg ttctcaggga tgtgcttgta 180

attgctgcat tgatggctgc tgcaagtcac ttcaacaact ggcttctctg gctaatctat 240

tggcccattc aaggaacaat gttctgggct ctgtttgttc ttggacatga ttggtaatta 300

attaatttgt tgttactttt ttgttataat atgaatctca cacactgctt tgttatgcct 360

acctcatttc atttggcttt agacaactta aatttgagat ctttattatg ttttttgctt 420

atatggtaaa gtgattcatt cttcacattg aattgaacag tggccatgga agcttttcag 480

acagcccttt tctaaatagc ctggtgggac acatcttgca ttcctcaatt cttgtgccat 540

accatggatg gttagttcat cccggctttt ttgtttgtca ttggaagttc ttttattgat 600

tcaattttta tagcgtgttc ggaaacgcgt ttcagaaaat aatgaaatac atcttgaatc 660

tgaaagttat aacttttagc ttcattgtca ttgaaagttc ttttattaat tatattttta 720

ttgcgtgttt ggaatcccat ttgagaaata agaaatcacg tttaaaatgt gaaagttata 780

actattaact tttgactaaa cttgaaaaaa tcacattttt gatgtggaac caaatctgat 840

ttgagaacca agttgatttt gatggatttt gcaggagaat tagccacaga actcaccatc 900

aaaatcatgg acacattgag aaaggatgaa tcctgggttc cagtatgtga ttaactactt 960

cctctatagt tatttttgat tcaattaaat ttatttattt aataagttca agaaaaaagg 1020

aatctttata cttcatgata aagctgttct tgaacatttt ttttttgtca ttatcttagt 1080

taaccgagaa gatttacaag aatctagaca acatgacaag acttgttaga ttcactgtgc 1140

catttccatt gtttgtgtat ccaatttatt tggtgagtgc tttttttttt ttacttggaa 1200

gactacaaca cattattatt attataatat ggttcaaatc aatgactttt aatttctttg 1260

tgatgtgcac tccattttca gttctcaaga agccccggaa aggaaggttc tcacttcaat 1320

ccctacagca atctgttccc acccagtgag agaaagggaa tagcaatatc aacactgtgt 1380

tgggttacca tgttttctat gcttatctat ctctccttca taactagtcc agttctattg 1440

ctcaagctct atggaattcc atattgggta attaaattac tcttacatta ctttttcctc 1500

ttttttttta tgggtcttaa ctagtatcac aaaaatattg gttaaaaaat tttaaaaaaa 1560

tatttattat gtaaatcata aaagaacata aaaaaaatga tgaataacat aattttcgtc 1620

tcttattaaa aatattttta ttttaaattt cttaatcaat atatttagaa tctggttaac 1680

attttttgaa tatttcaatt ctccaattaa aaatttgaaa tagtcaccat taattatgta 1740

attgtttgaa cacgtgcaga tatttgttat gtggctggac tttgtcacat acttgcatca 1800

ccatggtcat catcagaaac tgccttggta tcgcggcaag gtaacaaaaa taaatagaaa 1860

atagtgagtg aacacttaaa tgttagatac taccttcttc ttcttttttt ttttttgagg 1920

ttaatgctag ataatagcta gaaagagaaa gaaagacaaa tataggtaaa aataaataat 1980

ataacctggg aagaagaaaa cataaaaaaa gaaataatag agtctacgta atgtttggat 2040

ttttgagtga aatggtgttc acctaccatt actcaaagat tctgttgtct acgtagtgtt 2100

tggactttgg agtgaaatgg tgttcaccta ccattactca gattctgttg tgtcccttag 2160

ttactgtctt atattcttag ggtatattct ttattttaca tccttttcac atcttacttg 2220

aaaagatttt taattattca ttgaaatatt aacgtgacag ttaaattaaa ataataaaaa 2280

attcgttaaa acttcaaata aataagagtg aaaggatcat catttttctt ctttctttta 2340

ttgcgttatt aatcatgctt ctcttctttt ttttcttcgc tttccaccca tatcaaattc 2400

atgtgaagta tgagaaaatc acgattcaat ggaaagctac aggaactttt tttgttttgt 2460

ttttataatc ggaattaatt tatactccat tttttcacaa taaatgttac ttagtgcctt 2520

aaagataata tttgaaaaat taaaaaaatt attaatacac tgtactacta tataatattt 2580

gacatatatt taacatgatt ttctattgaa aatttgtatt tattattttt taatcaaaac 2640

ccataaggca ttaatttaca agacccattt ttcatttata gctttacctg tgatcattta 2700

tagctttaag ggacttagat gttacaatct taattacaag taaatattta tgaaaaacat 2760

gtgtcttacc ccttaacctt acctcaacaa agaaagtgtg ataagtggca acacacgtgt 2820

tgcttttttg gcccagcaat aacacgtgtt tttgtggtgt acaaaaatgg acaggaatgg 2880

agttatttaa gaggtggtct cacaactgtg gatcgtgact atggttggat caataacatt 2940

caccatgaca ttggcaccca tgttattcac catcttttcc ctcaaattcc tcattatcac 3000

ctcgttgaag cggtatattt tactattatt actcacctaa aaagaatgca attagtacat 3060

ttgttttatc tcttggaagt tagtcatttt cagttgcatg attgtaatgt tctctctatt 3120

tttaaaccat gttttcacac ctacttcgtt taaaataaga atgtggatac tattctaatt 3180

tctattaact tcttttaaaa aataatgtaa aactagtatt aaaaaagagg aaatagatta 3240

cactctacta atactaatag tataaaaaaa attacattgt tattttatca caaataatta 3300

tatataatta atttttacaa tcattatctt aaaagtcatg tatgatatac agtttttaca 3360

tgctttggta cttattgtaa agttagtgat ttattcatta tttatgttat ataattggca 3420

taaatatcat gtaaccagct cactatacta taatgggaac ttggtggtga aaggggttta 3480

caaccctctt ttctaggtgt aggtgctttg atacttctgg tcccttttta tatcaatata 3540

aattatattt tgctgataaa aaaaacatta ttaatatata atcattaact tctttaaaaa 3600

ccgtacctaa aactttatat tattaaaaag aagattgaga tcagcaaaag aaaaaaaaat 3660

taacagtcat ttgaattcac tgcagacaca agcagcaaaa tcagttcttg gagagtatta 3720

ccgtgagcca gaaagatctg caccattacc atttcatcta ataaagtatt taattcagag 3780

tatgagacaa gaccacttcg taagtgacac tggagatgtg gtttattatc agactgattc 3840

tctgcacctt cactcgcacc gagactga 3868

<210> 9

<211> 39

<212> DNA

<213> Artificial Synthesis

<400> 9

atatatggtc tcgattgtga gttggccaac agtgaagtt 39

<210> 10

<211> 41

<212> DNA

<213> Artificial Synthesis

<400> 10

tgtgagttgg ccaacagtga agttttagag ctagaaatag c 41

<210> 11

<211> 43

<212> DNA

<213> Artificial Synthesis

<400> 11

aacaaaggaa gcttttgatc cccaatctct tagtcgactc tac 43

<210> 12

<211> 37

<212> DNA

<213> Artificial Synthesis

<400> 12

attattggtc tcgaaacaaa ggaagctttt gatcccc 37

Claims (3)

1. The genetic mutant used for modifying the fatty acid component of the soybean is a single-gene mutant or a multi-gene mutant, and the single-gene mutant is generatedFAD2-1BMutation of a gene; the multiple gene mutant is occurringFAD2-1BJoint mutation of a gene and another geneFAD2-1AGenes andFAD3Aone or two of the genes;

the above-mentionedFAD2-1AThe mutation site of the gene is to replace 18 bases of 523-540 th position of the gene with the nucleotide sequence shown in SEQ ID NO. 06 with 28 bases; the above-mentionedFAD2-1BThe mutation site of the gene is that A at the 265 th site of the gene with the nucleotide sequence shown as SEQ ID NO. 07 is mutated into G, and an A base is inserted between the 269 th site and the 270 th site; the above-mentionedFAD3AThe mutation site of the gene is the deletion of 5 bases from the 53 th site to the 57 th site of the gene with the nucleotide sequence shown as SEQ ID NO: 08.

2. The gene mutant according to claim 1, characterized in that: the above-mentionedFAD2-1AThe mutation sites of the gene are that the CC at the 523-524 position of the gene shown in SEQ ID NO 06, the TA at the 526-527 position, the TT at the 526-527 position, the AAAAT between the 529 position and the 530 position, the ATA between the 531 position and the 532 position, the A between the 532 position and the 533 position and the AA at the 539-540 position are replaced by TCT.

3. Use of the genetic mutant of claim 1 or 2 to obtain high oleic acid oil crops.

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