CN112126661B - Method for efficiently knocking out TIGIT gene in NK cell - Google Patents
Method for efficiently knocking out TIGIT gene in NK cell Download PDFInfo
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Abstract
本发明公开了一种高效敲除NK细胞中TIGIT基因的方法,所述方法是利用CRISPR/Cas9基因编辑系统,以电穿孔转染方式将sgRNA与Cas9蛋白的复合物导入经扩增的NK细胞中,其中:sgRNA的序列选自SEQ ID NO.1~4所示序列中的任意一种。采用本发明所述方法可实现对NK细胞中TIGIT基因的敲除效率接近80%,不仅敲除效率高,而且所获得的不表达TIGIT的NK细胞可解除CD155+肿瘤细胞对NK细胞的免疫抑制作用,相对于野生型NK细胞,在体内、体外实验中均展现出更强的抗肿瘤活性,明显提高了NK细胞对肿瘤细胞的识别和杀伤活性,可望开发成安全有效的抗肿瘤生物制剂。The invention discloses a method for efficiently knocking out TIGIT gene in NK cells. The method uses CRISPR/Cas9 gene editing system to introduce the complex of sgRNA and Cas9 protein into amplified NK cells by electroporation transfection. wherein: the sequence of the sgRNA is selected from any one of the sequences shown in SEQ ID NO.1-4. The method of the invention can realize the knockout efficiency of TIGIT gene in NK cells close to 80%, not only the knockout efficiency is high, but also the obtained NK cells that do not express TIGIT can relieve the immunosuppressive effect of CD155+ tumor cells on NK cells Compared with wild-type NK cells, it exhibits stronger anti-tumor activity in both in vivo and in vitro experiments, significantly improving the recognition and killing activities of NK cells on tumor cells, and is expected to be developed into a safe and effective anti-tumor biological agent.
Description
技术领域technical field
本发明涉及一种高效敲除NK细胞中TIGIT基因的方法,属于基因编辑技术领域。The invention relates to a method for efficiently knocking out TIGIT gene in NK cells, and belongs to the technical field of gene editing.
背景技术Background technique
自然杀伤细胞(natural killer cell,NK细胞)是机体重要的免疫细胞,来源于骨髓淋巴样干细胞,其分化、发育依赖于骨髓及胸腺微环境,主要分布于骨髓、外周血、肝、脾、肺和淋巴结。NK细胞不同于T、B细胞,是一类无需预先致敏就能非特异性杀伤肿瘤细胞和病毒感染细胞的淋巴细胞,它不仅与抗肿瘤、抗病毒感染和免疫调节有关,而且在某些情况下参与超敏反应和自身免疫性疾病的发生,能够识别靶细胞、杀伤介质。Natural killer cells (NK cells) are important immune cells in the body. They are derived from bone marrow lymphoid stem cells. Their differentiation and development depend on the bone marrow and thymus microenvironment. They are mainly distributed in bone marrow, peripheral blood, liver, spleen and lung. and lymph nodes. Different from T and B cells, NK cells are a type of lymphocytes that can non-specifically kill tumor cells and virus-infected cells without prior sensitization. It is not only related to anti-tumor, anti-viral infection and immune regulation, but also in some cases. It is involved in the occurrence of hypersensitivity reactions and autoimmune diseases, and can recognize target cells and killing mediators.
研究表明:虽然NK细胞具有强大的天然抗肿瘤功能,且无需肿瘤细胞抗原(靶点)预先致敏即可识别并攻击肿瘤细胞,但瘤体组织内活化NK细胞数量少、活性低是针对实体肿瘤的NK细胞免疫治疗疗效的主要障碍,尽管采用体外扩增方法可获得高数量、高纯度NK细胞,但过继输注的NK细胞只有很少部分透过毛细血管进入实体肿瘤微环境,接触并杀伤肿瘤细胞,并不能解决瘤体组织内活化NK细胞数量少这个问题;另外,研究者陆续发现TIGIT(T cell immunoglobulin and ITIM domain)是新的免疫检查点之一,它与配体PVR/CD155(脊髓灰质炎病毒受体)结合可显著抑制T细胞或NK细胞的免疫应答;抗TIGIT抗体和抗PD-1抗体联合使用能逆转肿瘤浸润CD8+T细胞的耗竭状态,恢复其抗肿瘤免疫活性。Studies have shown that although NK cells have powerful natural anti-tumor functions, and can recognize and attack tumor cells without pre-sensitization to tumor cell antigens (targets), the small number and low activity of activated NK cells in tumor tissues are the main reason for targeting solid tumors. The main obstacle to the efficacy of NK cell immunotherapy for tumors is that although high numbers and high purity NK cells can be obtained by in vitro expansion methods, only a small fraction of adoptively infused NK cells enter the solid tumor microenvironment through capillaries, contact and Killing tumor cells does not solve the problem of the low number of activated NK cells in tumor tissue; in addition, researchers have successively found that TIGIT (T cell immunoglobulin and ITIM domain) is one of the new immune checkpoints, which is associated with the ligand PVR/CD155 (Poliovirus receptor) binding can significantly inhibit the immune response of T cells or NK cells; the combined use of anti-TIGIT antibody and anti-PD-1 antibody can reverse the exhausted state of tumor-infiltrating CD8+ T cells and restore their anti-tumor immune activity .
在NK细胞方面,研究还表明耗竭型NK细胞大量表达TIGIT而不是PD-1,无论是在小鼠体内敲除TIGIT基因,还是用抗体阻断TIGIT/PVR信号通路,都能增强NK细胞的抗肿瘤活性,延长荷瘤小鼠的生存期。尽管抗TIGIT抗体在动物水平的研究中展现出了理想的疗效,但有关TIGIT抗体的临床试验还为数不多。在最近的一项随机、双盲临床试验中,抗TIGIT抗体联合阿替利珠单抗一线治疗PD-L1阳性非小细胞肺癌患者,TIGIT抗体联合阿替利珠单抗的客观缓解率(ORR)仅为37%,相对于安慰剂+阿替利珠单抗组仅提高了16%,可见抗TIGIT抗体的临床疗效仍然十分有限,这可能与抗体难以到达肿瘤局部,或是到达肿瘤局部的抗体不足以完全阻断TIGIT/PVR信号通路有关,这一局限很大程度上制约了TIGIT免疫检查点阻滞疗法的开发。In terms of NK cells, studies have also shown that exhausted NK cells express a large amount of TIGIT instead of PD-1. Whether knocking out the TIGIT gene in mice or blocking the TIGIT/PVR signaling pathway with antibodies can enhance the resistance of NK cells. Tumor activity and prolong survival of tumor-bearing mice. Although anti-TIGIT antibodies have shown promising efficacy in animal-level studies, clinical trials of TIGIT antibodies are few and far between. In a recent randomized, double-blind clinical trial, anti-TIGIT antibody combined with atezolizumab in first-line treatment of patients with PD-L1 positive non-small cell lung cancer, the objective response rate (ORR) of TIGIT antibody combined with atezolizumab ) was only 37%, which was only 16% higher than that of the placebo + atezolizumab group. It can be seen that the clinical efficacy of anti-TIGIT antibodies is still very limited, which may be related to the difficulty of the antibody to reach the local tumor, or to reach the local tumor. Antibodies are not sufficient to completely block the TIGIT/PVR signaling pathway, and this limitation largely restricts the development of TIGIT immune checkpoint blockade therapy.
基因编辑技术是研究功能基因组的重要技术手段,目前已经发展了四代基因编辑技术:大范围核酸酶、锌指核酸酶、转录激活因子样效应物核酸酶、CRISPR等,其中,CRISPR系统因其高效、廉价而被广泛应用。CRISPR/Cas9是一种来源于原核生物的新型核酸酶系统,它由导向序列sgRNA和核酸酶Cas9两种元件组成,目前采用CRISPR/Cas9系统已经成功的在人、鼠、斑马鱼、拟南芥、水稻、果蝇、家蚕等物种中实现了基因敲除,但至今未见对NK细胞中TIGIT基因进行敲除的相关报道。Gene editing technology is an important technical means to study functional genomes. Four generations of gene editing technologies have been developed: meganucleases, zinc finger nucleases, transcription activator-like effector nucleases, CRISPR, etc. Efficient, cheap and widely used. CRISPR/Cas9 is a new type of nuclease system derived from prokaryotes. It is composed of two elements: guide sequence sgRNA and nuclease Cas9. At present, the CRISPR/Cas9 system has been successfully used in humans, mice, zebrafish, and Arabidopsis thaliana. , rice, Drosophila, silkworm and other species have achieved gene knockout, but so far there is no related report on the knockout of TIGIT gene in NK cells.
发明内容SUMMARY OF THE INVENTION
针对现有技术存在的上述问题,本发明的目的是提供一种高效敲除NK细胞中TIGIT基因的方法,从而获得不表达TIGIT的NK细胞,以提高NK细胞对肿瘤细胞的识别和杀伤活性,使其能开发成安全有效的抗肿瘤生物制剂,为过继免疫治疗肿瘤及病毒感染性疾病(例如HIV/AIDS、新型冠状病毒肺炎/COVID-19)提供新的生物制剂。In view of the above problems existing in the prior art, the purpose of the present invention is to provide a method for efficiently knocking out TIGIT gene in NK cells, thereby obtaining NK cells that do not express TIGIT, so as to improve the recognition and killing activity of NK cells to tumor cells, It can be developed into safe and effective anti-tumor biological agents, and provide new biological agents for adoptive immunotherapy of tumors and viral infectious diseases (such as HIV/AIDS, novel coronavirus pneumonia/COVID-19).
为实现上述发明目的,本发明采用如下技术方案:For realizing the above-mentioned purpose of the invention, the present invention adopts following technical scheme:
一种高效敲除NK细胞中TIGIT基因的方法,所述方法是利用CRISPR/Cas9基因编辑系统,以电穿孔转染方式将sgRNA与Cas9蛋白的复合物导入经扩增的NK细胞中,其中:sgRNA的序列选自SEQ ID NO.1~4所示序列中的任意一种。A method for efficiently knocking out TIGIT gene in NK cells, the method is to use the CRISPR/Cas9 gene editing system to introduce the complex of sgRNA and Cas9 protein into the amplified NK cells by electroporation transfection, wherein: The sequence of the sgRNA is selected from any one of the sequences shown in SEQ ID NO.1-4.
一种优选方案,sgRNA的序列选自SEQ ID NO.1或2所示序列。In a preferred embodiment, the sequence of the sgRNA is selected from the sequence shown in SEQ ID NO.1 or 2.
一种优选方案,所述复合物中,sgRNA与Cas9蛋白的质量比为1:(3~5)。In a preferred solution, in the complex, the mass ratio of sgRNA to Cas9 protein is 1:(3-5).
进一步优选方案,所述复合物中,sgRNA与Cas9蛋白的质量比为1:4。In a further preferred solution, in the complex, the mass ratio of sgRNA to Cas9 protein is 1:4.
一种优选方案,所述sgRNA经过磷酸化修饰。In a preferred solution, the sgRNA is modified by phosphorylation.
进一步优选方案,进行磷酸化修饰的位点为:3'端和5'端各3个硫代基和甲氧基。In a further preferred solution, the sites for phosphorylation modification are: 3 thio groups and methoxy groups at the 3' end and the 5' end respectively.
一种优选方案,所述Cas9蛋白先经过大肠杆菌密码子优化,然后构建到Pet28a表达质粒骨架中。In a preferred solution, the Cas9 protein is firstly codon-optimized in E. coli, and then constructed into the backbone of the Pet28a expression plasmid.
进一步优选方案,所述Cas9蛋白具有SEQ ID NO.5所示序列。In a further preferred solution, the Cas9 protein has the sequence shown in SEQ ID NO.5.
一种实施方案,所述sgRNA的制备包括如下步骤:One embodiment, the preparation of described sgRNA comprises the steps:
a)退火,向每条sgRNA添加TAGG内切酶粘性末端上游序列及AAAC内切酶粘性末端的下游序列后一起进行退火处理;a) annealing, adding the upstream sequence of the TAGG endonuclease sticky end and the downstream sequence of the AAAC endonuclease sticky end to each sgRNA and performing annealing treatment together;
b)线性化,将pUC57-sgRNA表达载体经过BsaI线性化;b) Linearization, the pUC57-sgRNA expression vector is linearized by BsaI;
c)连接,将退火产物连接到经过BsaI线性化的pUC57-sgRNA表达载体上,连接的载体通过转化、挑菌和鉴定后,对阳性克隆摇菌提取质粒并测定浓度;c) connect, connect the annealed product to the pUC57-sgRNA expression vector linearized by BsaI, after the connected vector is transformed, picked and identified, the positive clone is shaken to extract the plasmid and measure the concentration;
d)PCR扩增,所用正向引物的序列为:TCTCGCGCGTTTCGGTGATGACGG,所用反向引物的序列为:AAAAAAAGCACCGACTCGGTGCCACTTTTTC;d) PCR amplification, the sequence of the forward primer used is: TCTCGCGCGTTTCGGTGATGACGG, and the sequence of the reverse primer used is: AAAAAAAGCACCGACTCGGTGCCACTTTTTC;
e)体外转录,利用T7转录试剂盒将sgRNA的DNA体外转录为RNA,凝胶电泳鉴定后用RNA回收。e) In vitro transcription, the DNA of sgRNA was transcribed into RNA in vitro by using T7 transcription kit, and the RNA was recovered after identification by gel electrophoresis.
与现有技术相比,本发明具有如下显著性有益效果:Compared with the prior art, the present invention has the following significant beneficial effects:
本发明的研究结果显示:采用本发明所述方法可实现对NK细胞中TIGIT基因的敲除效率接近80%,不仅敲除效率高,而且所获得的不表达TIGIT的NK细胞可解除CD155+肿瘤细胞对NK细胞的免疫抑制作用,相对于野生型NK细胞,在体内、体外实验中均展现出更强的抗肿瘤活性,明显提高了NK细胞对肿瘤细胞的识别和杀伤活性,可望开发成安全有效的抗肿瘤生物制剂,具有明显的应用前景和临床应用价值,对过继免疫治疗肿瘤及病毒感染性疾病(例如HIV/AIDS、新型冠状病毒肺炎/COVID-19)具有重要意义。The research results of the present invention show that the method of the present invention can realize the knockout efficiency of TIGIT gene in NK cells close to 80%, not only the knockout efficiency is high, but also the obtained NK cells that do not express TIGIT can relieve CD155+ tumor cells The immunosuppressive effect on NK cells, compared with wild-type NK cells, showed stronger anti-tumor activity in both in vivo and in vitro experiments, significantly improved the recognition and killing activities of NK cells on tumor cells, and is expected to be developed into a safe Effective anti-tumor biological agents have obvious application prospects and clinical application value, and are of great significance for adoptive immunotherapy of tumors and viral infectious diseases (such as HIV/AIDS, novel coronavirus pneumonia/COVID-19).
附图说明Description of drawings
图1体现了CM137和EN138两种程序电转后NK细胞的活细胞百分比的对比情况,其中的control组为未经电转的NK细胞;Figure 1 shows the comparison of viable cell percentages of NK cells after electroporation of CM137 and EN138, and the control group is NK cells without electroporation;
图2A体现了采用CM137程序电转不同的sgRNA/Cas9蛋白复合物后NK细胞的活细胞百分比的对比情况,其中的WT组为仅电转Cas9蛋白但未电转sgRNA的NK细胞;Figure 2A shows the comparison of the percentage of viable cells of NK cells after electroporation of different sgRNA/Cas9 protein complexes using the CM137 program.
图2B显示了电转靶向TIGIT的不同sgRNA后对TIGIT基因的敲除效率对比,其中的CD56是人NK细胞的表面标志物,WT组为仅电转Cas9蛋白但未电转sgRNA的NK细胞;Figure 2B shows the comparison of the knockout efficiency of TIGIT gene after electrotransduction of different sgRNAs targeting TIGIT, in which CD56 is a surface marker of human NK cells, and the WT group is NK cells only electrotransduced with Cas9 protein but not electrotransduced with sgRNA;
图3A体现了采用CM137程序电转靶向TIGIT的未经修饰的和经磷酸化修饰的sgRNA-2序列后,对NK细胞的细胞活性对比,其中的WT组为仅电转Cas9蛋白但未电转sgRNA的NK细胞;Figure 3A shows the comparison of the cell activity of NK cells after electroporation of unmodified and phosphorylated sgRNA-2 sequences targeting TIGIT using the CM137 program. NK cells;
图3B显示了电转靶向TIGIT的未经修饰的和经磷酸化修饰的sgRNA-2序列后,对TIGIT基因的敲除效率对比,其中的CD56是人NK细胞的表面标志物,WT组为仅电转Cas9蛋白但未电转sgRNA的NK细胞;Figure 3B shows the comparison of the knockdown efficiency of TIGIT gene after electroporation of unmodified and phosphorylated sgRNA-2 sequences targeting TIGIT, in which CD56 is a surface marker of human NK cells, and the WT group is only NK cells electroporated with Cas9 protein but not electroporated with sgRNA;
图3C为电转靶向TIGIT的未经修饰的和经磷酸化修饰的sgRNA-2序列后的测序分析结果对比;Figure 3C is a comparison of the sequencing analysis results after electroporation of unmodified and phosphorylated sgRNA-2 sequences targeting TIGIT;
图4体现了敲除TIGIT基因后的NK细胞以及野生型NK细胞对H1975肺癌、HCT8结直肠癌、PC3前列腺癌、LM7骨肉瘤、HepG2肝癌、A375和色素瘤、MDA-MB-231乳腺癌、K562白血病细胞的体外杀伤活性对比;Figure 4 shows the effect of NK cells after TIGIT knockout and wild-type NK cells on H1975 lung cancer, HCT8 colorectal cancer, PC3 prostate cancer, LM7 osteosarcoma, HepG2 liver cancer, A375 and melanoma, MDA-MB-231 breast cancer, Comparison of in vitro killing activity of K562 leukemia cells;
图5体现了敲除TIGIT基因后的NK细胞以及野生型NK细胞,与H1975肺癌细胞或HepG2肝癌细胞体外共培养时NK细胞的脱颗粒水平对比;Figure 5 shows the comparison of the degranulation level of NK cells after knockout of TIGIT gene and wild-type NK cells compared with H1975 lung cancer cells or HepG2 liver cancer cells in vitro;
图6A体现了敲除TIGIT基因后的NK细胞以及野生型NK细胞过继免疫治疗对肺癌荷瘤小鼠肿瘤生长的控制情况对比;Figure 6A shows the comparison of the control of tumor growth in lung cancer tumor-bearing mice by adoptive immunotherapy of NK cells after knockout of TIGIT gene and wild-type NK cells;
图6B体现了不同类型NK细胞过继免疫治疗对荷瘤小鼠体重的影响。Figure 6B shows the effect of adoptive immunotherapy of different types of NK cells on the body weight of tumor-bearing mice.
具体实施方式Detailed ways
下面结合具体实施例,进一步阐述本发明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。下列实施例中未注明具体条件的实验方法,通常按照常规条件或按照制造厂商所建议的条件。The present invention will be further described below in conjunction with specific embodiments. It should be understood that these examples are only used to illustrate the present invention and not to limit the scope of the present invention. In the following examples, the experimental methods without specific conditions are usually in accordance with conventional conditions or in accordance with the conditions suggested by the manufacturer.
实施例1Example 1
一种高效敲除NK细胞中TIGIT基因的方法,包括如下具体步骤:A method for efficiently knocking out TIGIT gene in NK cells, comprising the following specific steps:
一、NK细胞的扩增和培养1. Expansion and culture of NK cells
1)从液氮中取出冻存的人外周血单个核细胞(PBMC),于37℃水浴迅速融化;1) Take out the cryopreserved human peripheral blood mononuclear cells (PBMC) from liquid nitrogen and thaw rapidly in a 37°C water bath;
2)在一个新的15mL离心管中加入4mL含有10%FBS和1%青霉素/链霉素双抗的RPMI-1640完全培养液,将1mL PBMC悬液转移至15mL离心管中;2) Add 4 mL of RPMI-1640 complete culture solution containing 10% FBS and 1% penicillin/streptomycin double antibody to a new 15 mL centrifuge tube, and
3)于室温250×g离心5min;3) Centrifuge at 250 × g for 5 min at room temperature;
4)弃去上清液,使用1mL RPMI-1640培养液重悬细胞;4) Discard the supernatant and resuspend the cells with 1 mL of RPMI-1640 medium;
5)在一个新的75mL细胞培养瓶中加入19mL RPMI-1640培养液,将上述细胞悬液转移至培养瓶中;5) Add 19mL RPMI-1640 culture medium to a new 75mL cell culture flask, and transfer the above cell suspension to the culture flask;
6)向培养瓶中加入人重组IL-2蛋白,终浓度为200U/mL;6) Add human recombinant IL-2 protein to the culture flask, and the final concentration is 200U/mL;
7)将培养瓶置于37℃、5%CO2培养箱中,培养过夜后,将培养瓶中的PBMC进行细胞计数;7) Place the culture flask in a 37°C, 5% CO 2 incubator, and after culturing overnight, count the PBMCs in the culture flask;
8)从液氮取出冻存的辐照EK562工程细胞,并于37℃水浴迅速融化;8) Take out the cryopreserved irradiated EK562 engineered cells from liquid nitrogen, and rapidly thaw them in a 37°C water bath;
9)在一个新的15mL离心管中加入4mL RPMI-1640完全培养液,将EK562细胞悬液转移至15mL离心管中;9) Add 4mL of RPMI-1640 complete culture medium to a new 15mL centrifuge tube, and transfer the EK562 cell suspension to a 15mL centrifuge tube;
10)于室温250×g离心5min;10) Centrifuge at 250 × g for 5 min at room temperature;
11)弃去上清液,使用1mL RPMI-1640培养液重悬细胞并进行细胞计数;11) Discard the supernatant,
12)按PBMC:EK562=1:1的效靶比向培养瓶中加入EK562细胞;12) Add EK562 cells to the culture flask according to the effect-target ratio of PBMC:EK562=1:1;
13)将细胞置于37℃、5%CO2培养箱中培养,每两天换一次液并进行细胞计数,将细胞密度控制在0.5至1×106个/mL范围内,根据培养液体积加入IL-2,终浓度为100U/mL;13) Culture the cells in a 37°C, 5% CO 2 incubator, change the medium every two days and count the cells, and control the cell density within the range of 0.5 to 1×10 6 cells/mL, depending on the volume of the culture medium Add IL-2, the final concentration is 100U/mL;
14)培养至第7天时,将培养瓶中细胞进行计数,并按照PBMC:EK562=1:1的效靶比向培养瓶中再次加入EK562细胞;14) When culturing to the 7th day, count the cells in the culture flask, and add EK562 cells to the culture flask again according to the effect-target ratio of PBMC:EK562=1:1;
15)将细胞置于37℃、5%CO2培养箱中培养,每两天换一次液并进行细胞计数,将细胞密度控制在0.5至1×106个/mL范围内,根据培养液体积加入IL-2,终浓度为100U/mL;15) Culture the cells in a 37°C, 5% CO 2 incubator, change the medium every two days and count the cells, and control the cell density within the range of 0.5 to 1×10 6 cells/mL, depending on the volume of the culture medium Add IL-2, the final concentration is 100U/mL;
16)培养至第14天后,培养瓶中NK细胞的纯度可达到95%以上。16) After culturing to the 14th day, the purity of NK cells in the culture flask can reach more than 95%.
二、sgRNA的制备2. Preparation of sgRNA
1)退火,向每条sgRNA(sgRNA的序列选自SEQ ID NO.1~4所示序列中的任意一种)添加TAGG内切酶粘性末端上游序列和加了AAAC内切酶粘性末端的下游序列后,一起通过程序(95℃,5min;95℃-85℃,-2℃/s;85℃-25℃,-0.1℃/s;保持在4℃)退火;1) Annealing, to each sgRNA (the sequence of the sgRNA is selected from any one of the sequences shown in SEQ ID NO. 1 to 4) adding the upstream sequence of the TAGG endonuclease sticky end and the downstream adding the AAAC endonuclease sticky end After the sequence, annealed together through the program (95°C, 5min; 95°C-85°C, -2°C/s; 85°C-25°C, -0.1°C/s; hold at 4°C);
2)线性化,将pUC57-sgRNA表达载体(Addgene#51132)经过BsaI(NEB:R0539L)线性化,线性化体系为:pUC57-sgRNA表达载体2μg;缓冲溶液(NEB:R0539L)5μL;BsaI1μL;ddH2O补齐到50μL;2) Linearization, the pUC57-sgRNA expression vector (Addgene#51132) was linearized by BsaI (NEB: R0539L). The linearization system was: pUC57-
3)连接,将退火产物连接到经过BsaI线性化的pUC57-sgRNA表达载体上,连接体系为:T4连接缓冲溶液(NEB:M0202L)1μL,线性化载体20ng,退火的oligo片段(10μM)5μL,T4连接酶(NEB:M0202L)0.5μL,ddH2O补齐到10μL,于16℃连接一小时;连接的载体通过转化、挑菌、鉴定后对阳性克隆摇菌提取质粒(Axygene:AP-MN-P-250G)并测定浓度;3) Ligation, ligating the annealed product to the pUC57-sgRNA expression vector linearized by BsaI, the ligation system is: 1 μL of T4 ligation buffer solution (NEB: M0202L), 20 ng of linearized vector, 5 μL of annealed oligo fragment (10 μM), T4 ligase (NEB: M0202L) 0.5 μL, filled with ddH 2 O to 10 μL, and ligated at 16°C for one hour; the ligated vector was transformed, picked, and identified, and the positive clones were shaken to extract plasmids (Axygene: AP-MN) -P-250G) and determine the concentration;
4)PCR扩增,所用正向引物sgRNA-F的序列为:TCTCGCGCGTTTCGGTGATGACGG,所用反向引物sgRNA-R的序列为:AAAAAAAGCACCGACTCGGTGCCACTTTTTC;将含有T7启动子的sgRNA序列利用PCR扩增下来,凝胶电泳鉴定条带后用RNA-SECURE(Thermo,#AM7005)于65℃处理15分钟,然后将扩增产物回收(Axygene:AP-PCR-250G)并测定浓度;4) PCR amplification, the sequence of the forward primer sgRNA-F used is: TCTCGCGCGTTTCGGTGATGACGG, and the sequence of the reverse primer sgRNA-R used is: AAAAAAAGCACCGACTCGGTGCCACTTTTTC; the sgRNA sequence containing the T7 promoter is amplified by PCR and identified by gel electrophoresis After the band was treated with RNA-SECURE (Thermo, #AM7005) at 65°C for 15 minutes, then the amplification product was recovered (Axygene: AP-PCR-250G) and the concentration was determined;
5)体外转录,利用T7转录试剂盒(Thermo,#AM1354)将sgRNA的DNA体外转录为RNA,凝胶电泳鉴定后用RNA回收(Thermo,#AM1908)将sgRNA回收测浓度。5) In vitro transcription, using T7 transcription kit (Thermo, #AM1354) to transcribe the DNA of sgRNA into RNA in vitro, after identification by gel electrophoresis, use RNA recovery (Thermo, #AM1908) to recover the sgRNA to measure the concentration.
三、Cas9的制备和纯化3. Preparation and purification of Cas9
1)密码子优化,将Cas9蛋白进行大肠杆菌密码子优化,然后合成序列,并构建进Pet28a表达质粒骨架中,优化后的序列如SEQ ID NO.5所示;1) Codon optimization, the Cas9 protein is subjected to codon optimization of E. coli, and then the sequence is synthesized and constructed into the Pet28a expression plasmid backbone, and the optimized sequence is shown in SEQ ID NO.5;
2)质粒转化,将Pet28a-Cas9质粒用BL21感受态转化涂板,挑单克隆进行摇菌表达,准备2L培基在37℃、220rpm的摇床摇菌,待菌液OD值在0.6-0.8之间加IPTG 2mL(2M浓度),诱导培养24小时后收菌;2) Plasmid transformation, the Pet28a-Cas9 plasmid was transformed into a plate with BL21 competence, and a single clone was picked for expression by shaking the bacteria. Prepare 2 L of culture medium at 37°C and shake the bacteria at 220 rpm, and wait for the OD value of the bacterial solution to be 0.6-0.8 IPTG 2mL (2M concentration) was added between, and the bacteria were harvested after 24 hours of induction culture;
3)收菌,将菌液高速离心:4000rpm 30min,弃上清;3) Collect bacteria, centrifuge the bacteria liquid at high speed: 4000rpm for 30min, discard the supernatant;
4)破菌,用Buffer A将离心后的菌体吹散后,加入蛋白酶抑制剂,用高压破碎机将大肠杆菌破碎,高速离心后取上清;所述Buffer A的配方为:25mM Tris PH=8.0,500mMNaCl,10%(v/v)甘油,0.22μM滤器过滤;4) Bacteria break, after the centrifuged bacteria are blown away with Buffer A, protease inhibitors are added, Escherichia coli is broken with a high-pressure crusher, and the supernatant is taken after high-speed centrifugation; the formula of the Buffer A is: 25mM Tris PH =8.0, 500 mM NaCl, 10% (v/v) glycerol, 0.22 μM filter;
5)过柱,将破碎后的上清用0.45μM滤膜过滤后加入Buffer A润洗后的钴离子亲和层析柱(Clontech,635504)对带His标签的Cas9蛋白吸附;5) Pass the column, filter the crushed supernatant with a 0.45 μM filter membrane, and add a cobalt ion affinity chromatography column (Clontech, 635504) after rinsing with Buffer A to adsorb the His-tagged Cas9 protein;
6)去杂质,用40mL添加有5mM咪唑的Buffer A过柱子,以去除亲和力较低的杂质;6) To remove impurities, use 40 mL of Buffer A supplemented with 5 mM imidazole to pass through the column to remove impurities with lower affinity;
7)洗脱,用30mL添加有500mM咪唑的bufferA过柱子,置换出目的蛋白Cas9;7) Elution, use 30 mL of buffer A added with 500 mM imidazole to pass through the column to replace the target protein Cas9;
8)浓缩,Western blot鉴定后将洗脱下来的目的蛋白加入到蛋白浓缩柱中,3900rpm,20min;8) Concentrate, add the eluted target protein to the protein concentration column after Western blot identification, 3900rpm, 20min;
9)浓缩后的蛋白进行离子交换层析(Ion exchange chromatography(IEC)),以除去与蛋白结合的核酸,然后再次浓缩,测定浓度后分装冻存备用。9) The concentrated protein is subjected to ion exchange chromatography (IEC) to remove the nucleic acid bound to the protein, and then concentrated again.
四、电穿孔转染NK细胞4. Transfection of NK cells by electroporation
1)将Cas9蛋白和sgRNA以4:1的质量比混合,用枪头轻轻吹打混匀后,于室温放置15分钟;1) Mix Cas9 protein and sgRNA at a mass ratio of 4:1, gently pipette and mix with a pipette tip, and place at room temperature for 15 minutes;
2)准备细胞,用PBS清洗NK细胞并离心;2) Prepare cells, wash NK cells with PBS and centrifuge;
3)电转,用电转试剂盒(Lonza,V4XP-3032或V4XP-3024)准备电转液,用电转液将细胞和RNP(即:sgRNA与Cas9蛋白的复合物)重悬混匀后,加入电转杯中,注意不要有气泡,选择电转程序进行电转,电转后用枪头吸出液体放入提前预热的培养基中培养,最后根据需要培养进行检测。图1体现了CM137和EN138两种电转程序电转后NK细胞活细胞百分比的对比情况,由图1所示结果可见:采用CM137电转程序对细胞活性的影响更小。3) Electroporation, prepare electroporation solution with electroporation kit (Lonza, V4XP-3032 or V4XP-3024), use electroporation solution to resuspend cells and RNP (ie: the complex of sgRNA and Cas9 protein), add In the electroporation cup, be careful not to have air bubbles. Select the electroporation program to perform electroporation. After electroporation, use a pipette tip to aspirate the liquid and put it into the pre-warmed medium for culture. Finally, culture as needed for testing. Figure 1 shows the comparison of the percentage of viable NK cells after electroporation between CM137 and EN138. It can be seen from the results shown in Figure 1 that the CM137 electroporation program has less effect on cell viability.
实施例2Example 2
采用流式细胞术检测基因敲除效率:Gene knockout efficiency was detected by flow cytometry:
1)收集野生型或敲除TIGIT基因后的NK细胞并使用含1%胎牛血清(FBS)的1×PBS洗涤两次;1) Collect wild-type or TIGIT knockout NK cells and wash twice with 1×PBS containing 1% fetal bovine serum (FBS);
2)用含1%FBS的PBS重悬细胞并计数,将细胞浓度调整至3×106个/mL;2) Resuspend the cells in PBS containing 1% FBS and count, and adjust the cell concentration to 3×10 6 cells/mL;
3)取上述细胞悬液50μL加入新的1.5mL离心管中,加入PE-anti TIGTI抗体1μL,于4℃避光孵育30min;3) Add 50 μL of the above cell suspension into a new 1.5 mL centrifuge tube, add 1 μL of PE-anti TIGTI antibody, and incubate at 4°C for 30 min in the dark;
4)使用1%FBS 1×PBS洗涤两次;4) Wash twice with 1
5)用300μL 1%FBS 1×PBS重悬细胞并进行流式上机检测。5) Resuspend the cells with 300 μL of 1
检测结果如图2A和2B所示,由图2A和2B所示结果可见:sgRNA-1和2相对sgRNA-3和4具有更高的敲除效率,并且sgRNA-2相对于sgRNA-1对细胞活力的影响更小,详见表1所示:The detection results are shown in Figures 2A and 2B. From the results shown in Figures 2A and 2B, it can be seen that: sgRNA-1 and 2 have higher knockout efficiency than sgRNA-3 and 4, and sgRNA-2 has higher knockdown efficiency than sgRNA-1. Vitality has a smaller effect, as shown in Table 1:
表1流式细胞术检测TIGIT敲除效率Table 1 Detection of TIGIT knockout efficiency by flow cytometry
由表1结果可见:在同等条件下,选自SEQ ID NO.1或2所示序列的sgRNA对NK细胞中TIGIT基因的敲除效率较高,且对细胞活力的影响较小。From the results in Table 1, it can be seen that under the same conditions, the sgRNA selected from the sequence shown in SEQ ID NO. 1 or 2 has a higher knockout efficiency of the TIGIT gene in NK cells, and has less effect on cell viability.
实施例3Example 3
靶向TIGIT的磷酸化修饰的gRNA购自金斯瑞生物科技有限公司,具体磷酸化位点为:3'端和5'端各3个硫代基和甲氧基修饰。The phosphorylation-modified gRNA targeting TIGIT was purchased from GenScript Biotechnology Co., Ltd., and the specific phosphorylation sites were: 3 thio groups and methoxy groups at the 3' and 5' ends respectively.
具体序列为TIGIT-2:CTGGTGTCTCCTCCTGATCTThe specific sequence is TIGIT-2: CTGGTGTCTCCTCCTGATCT
图3A体现了采用CM137程序电转靶向TIGIT的未经修饰的和经磷酸化修饰的sgRNA-2序列后,对NK细胞的细胞活性对比,其中的WT组为仅电转Cas9蛋白但未电转sgRNA的NK细胞;Figure 3A shows the comparison of the cell activity of NK cells after electroporation of unmodified and phosphorylated sgRNA-2 sequences targeting TIGIT using the CM137 program. NK cells;
图3B显示了电转靶向TIGIT的未经修饰的和经磷酸化修饰的sgRNA-2序列后,对TIGIT基因的敲除效率对比,其中的CD56是人NK细胞的表面标志物,WT组为仅电转Cas9蛋白但未电转sgRNA的NK细胞;Figure 3B shows the comparison of the knockdown efficiency of TIGIT gene after electroporation of unmodified and phosphorylated sgRNA-2 sequences targeting TIGIT, in which CD56 is a surface marker of human NK cells, and the WT group is only NK cells electroporated with Cas9 protein but not electroporated with sgRNA;
图3C为电转靶向TIGIT的未经修饰的和经磷酸化修饰的sgRNA-2序列后的测序分析结果对比;Figure 3C is a comparison of the sequencing analysis results after electroporation of unmodified and phosphorylated sgRNA-2 sequences targeting TIGIT;
由图3A至图3C所示结果可见:野生型NK细胞CD56+/TIGIT+NK的百分率为91.3%,经磷酸化修饰的TIGIT-2gRNA可将CD56+/TIGIT+NK细胞的百分率降低至12.9%,而未经磷酸化修饰的TIGIT-2gRNA仅能降低至68.8%,表明经磷酸化修饰的sgRNA具有更好的稳定性和更强的活性。From the results shown in Figure 3A to Figure 3C, it can be seen that the percentage of CD56+/TIGIT+NK cells in wild-type NK cells is 91.3%, and the phosphorylation-modified TIGIT-2 gRNA can reduce the percentage of CD56+/TIGIT+NK cells to 12.9%, while The unphosphorylated TIGIT-2 gRNA could only be reduced to 68.8%, indicating that the phosphorylated sgRNA has better stability and stronger activity.
如图3C所示,取细胞抽提基因组,进行sanger测序,结果与流式结果一致,进一步验证了磷酸化修饰后的sgRNA具有更高的敲除效率,具体结果见表2所示:As shown in Figure 3C, the genome was extracted from the cells and subjected to sanger sequencing. The results were consistent with the flow cytometry results, which further verified that the phosphorylation-modified sgRNA had a higher knockout efficiency. The specific results are shown in Table 2:
表2流式细胞术检测TIGIT-2敲除效率Table 2 Detection of TIGIT-2 knockout efficiency by flow cytometry
实施例4Example 4
一、生物发光法检测NK细胞体外杀伤活性1. Bioluminescence assay to detect the killing activity of NK cells in vitro
1)收集肿瘤细胞和NK细胞进行计数,向96孔板中加入肿瘤细胞,10000个/孔,终体积50μL;1) Collect tumor cells and NK cells for counting, add tumor cells to a 96-well plate, 10,000 cells/well, and the final volume is 50 μL;
2)收集野生型和敲除TIGIT基因后的NK细胞,计数后按NK细胞:肿瘤细胞(简记为E:T)=0.5:1、1:1和2:1的比例,向96孔板中加入50μL NK细胞;2) Collect wild-type and TIGIT gene knockout NK cells, count them according to the ratio of NK cells:tumor cells (abbreviated as E:T) = 0.5:1, 1:1 and 2:1, and transfer them to a 96-well plate. Add 50 μL of NK cells to the
3)每组做三个重复孔,另设立肿瘤细胞单独培养以及NK细胞单独培养的对照孔;3) Make three replicate wells for each group, and set up control wells for tumor cell culture alone and NK cell culture alone;
4)培养24h后,每孔加入100μL 生物发光检测试剂(购自Promega公司);4) After culturing for 24 hours, add 100 μL to each well Bioluminescence detection reagent (purchased from Promega);
5)室温震荡1min后,静置10min,随后与酶标仪检测生物发光强度;5) After shaking at room temperature for 1min, let stand for 10min, and then detect the bioluminescence intensity with a microplate reader;
6)按以下公式计算NK细胞的杀伤活力:6) Calculate the killing activity of NK cells according to the following formula:
MeanMix:NK细胞与肿瘤细胞共培养组的平均发光强度;Mean Mix : the average luminescence intensity of the co-culture group of NK cells and tumor cells;
MeanNK:NK细胞单独培养组的平均发光强度;Mean NK : the average luminescence intensity of NK cells cultured alone;
MeanTumor:肿瘤细胞单独培养组的平均发光强度。Mean Tumor : Mean luminescence intensity of tumor cells cultured alone.
如图4所示,野生型或敲除TIGIT基因后的NK细胞与肿瘤细胞共培养24小时后,通过生物发光法检测NK细胞对靶细胞的杀伤百分比,结果显示敲除TIGIT基因后的NK细胞相对于野生型NK细胞均具有更强的抗肿瘤活性,具体结果见表3所示:As shown in Figure 4, after 24 hours of co-culture of wild-type or TIGIT gene knockout NK cells and tumor cells, the percentage of NK cells killing target cells was detected by bioluminescence method, and the results showed that the NK cells after TIGIT gene knockout Compared with wild-type NK cells, they have stronger anti-tumor activity, and the specific results are shown in Table 3:
表3敲除TIGIT基因后的NK细胞与野生型NK细胞的抗肿瘤活性比较Table 3 Comparison of antitumor activity of NK cells after TIGIT gene knockout and wild-type NK cells
二、NK细胞脱颗粒水平检测2. Detection of NK cell degranulation level
1)肿瘤细胞消化后进行细胞计数,将细胞浓度调整为3×106个/mL;1) After the tumor cells were digested, the cells were counted, and the cell concentration was adjusted to 3×10 6 cells/mL;
2)取野生型或敲除TIGIT基因后的NK细胞,用RPMI-1640完全培养液洗涤两次并计数,将细胞浓度调整至3×106个/mL;2) Take wild-type or TIGIT gene knockout NK cells, wash twice with RPMI-1640 complete medium and count, and adjust the cell concentration to 3×10 6 cells/mL;
3)取上述NK细胞100μL加入新的48孔板中,再加入100μL RPMI-1640完全培养液即为单独NK细胞组;3) Take 100 μL of the above NK cells and add them to a new 48-well plate, and then add 100 μL of RPMI-1640 complete culture medium to form a single NK cell group;
4)分别取上述肿瘤细胞和NK细胞各100μL,加入48孔板中,即为NK+肿瘤细胞组;4) Take 100 μL of each of the above tumor cells and NK cells and add them to a 48-well plate, which is the NK+ tumor cell group;
5)向上述各孔中加入5μL PE/Cy5-anti CD107A抗体或相应同型对照抗体,置于37℃、5%CO2培养箱培养;5) Add 5 μL PE/Cy5-anti CD107A antibody or the corresponding isotype control antibody to the above wells, and place in a 37°C, 5% CO 2 incubator for incubation;
6)培养4h后,收集每孔细胞,并转移至新的1.5mL离心管中,使用1%FBS 1×PBS洗涤一次;6) After culturing for 4 hours, collect cells from each well, transfer them to a new 1.5 mL centrifuge tube, and wash once with 1
7)用50μL 1%FBS 1×PBS重悬细胞,每管加入1μL FITC-anti CD56抗体或相应同型对照抗体,于4℃孵育30min;7) Resuspend cells with 50
8)使用1%FBS 1×PBS洗涤两次,加入300μL 1%FBS 1×PBS重悬细胞并进行流式上机检测。8) Wash twice with 1
将野生型或敲除TIGIT基因后的NK细胞与肿瘤细胞进行共培养,通过流式检测NK细胞CD107A的荧光强度,可间接反映NK细胞的脱颗粒水平。CD107A阳性的NK细胞百分比越高,表明被活化的NK细胞越多,脱颗粒是NK细胞诱导肿瘤细胞死亡的重要手段之一。由图5可见,单独培养的NK细胞的CD107A的阳性百分比不超过3%,表明其处于静息状态,仅当NK细胞与肿瘤细胞共培养时,CD107A的阳性率才会大幅提高。与野生型NK细胞相比,敲除TIGIT基因后的NK细胞的CD107A的阳性率均显著提高,表明敲除TIGIT基因后的NK细胞识别和杀伤肿瘤细胞的活性更强。Wild-type or TIGIT knockout NK cells were co-cultured with tumor cells, and the fluorescence intensity of CD107A in NK cells was detected by flow cytometry, which could indirectly reflect the degranulation level of NK cells. The higher the percentage of CD107A-positive NK cells, the more activated NK cells. Degranulation is one of the important means for NK cells to induce tumor cell death. It can be seen from Figure 5 that the positive percentage of CD107A of NK cells cultured alone does not exceed 3%, indicating that they are in a resting state, and the positive rate of CD107A will be greatly increased only when NK cells are co-cultured with tumor cells. Compared with wild-type NK cells, the positive rate of CD107A in NK cells after TIGIT gene knockout was significantly increased, indicating that NK cells after TIGIT gene knockout were more active in recognizing and killing tumor cells.
三、敲除TIGIT基因后的NK细胞的抗肿瘤活性的体内检测3. In vivo detection of antitumor activity of NK cells after knockout of TIGIT gene
1)选取T、B和NK细胞均缺失的重症联合免疫缺陷(SCID-bg)小鼠作为荷瘤小鼠,订购小鼠均为雄性,5周龄,小鼠饲养于SPF级动物饲养室,适应性饲养一周后向其背部接种肿瘤细胞;1) Severe combined immunodeficiency (SCID-bg) mice with deletion of T, B and NK cells were selected as tumor-bearing mice. The ordered mice were all male, 5 weeks old, and the mice were raised in SPF animal breeding rooms. After one week of adaptive feeding, tumor cells were inoculated into its back;
2)消化并收集H1975肺癌细胞,使用无血清RPMI-1640培养液重悬细胞;2) Digest and collect H1975 lung cancer cells, and use serum-free RPMI-1640 medium to resuspend the cells;
3)将H1975细胞悬液浓度调整至3×107个/mL;3) Adjust the concentration of H1975 cell suspension to 3×10 7 cells/mL;
4)取6周龄雄性SCID-Bg小鼠称重,按25mg/kg体重的剂量腹腔注射戊巴比妥钠进行麻醉;4) 6-week-old male SCID-Bg mice were weighed and anesthetized by intraperitoneal injection of sodium pentobarbital at a dose of 25 mg/kg body weight;
5)使用剃毛器将小鼠背部右侧靠近肩胛骨处毛发剃去,皮下注射上述细胞悬液100μL;5) Use a shaver to shave off the hair on the right side of the mouse's back near the scapula, and inject 100 μL of the above cell suspension subcutaneously;
6)接种3天后,小鼠按体重随机分为2组,每组5只,分别接受野生型NK细胞和TIGIT敲除NK细胞过继免疫治疗:NK细胞经尾静脉注射给予,每只小鼠注射1×107个NK细胞,每周注射1次;每3天测量一次小鼠瘤块大小,同时记录小鼠体重。6) After 3 days of inoculation, mice were randomly divided into 2 groups according to body weight, with 5 mice in each group, respectively receiving wild-type NK cells and TIGIT knockout NK cells adoptive immunotherapy: NK cells were administered by tail vein injection, and each mouse was injected 1×10 7 NK cells were injected once a week; the tumor size of mice was measured every 3 days, and the body weight of mice was recorded at the same time.
如图6A所示,经敲除TIGIT基因后的NK细胞(TIGIT-KO)治疗后,肺癌荷瘤小鼠肿瘤生长受到明显抑制,经过3次NK细胞过继免疫治疗,TIGIT-KO组荷瘤小鼠瘤块体积较WT组缩小57%,详见表4所示:As shown in Figure 6A, after treatment with NK cells after TIGIT gene knockout (TIGIT-KO), the tumor growth of lung cancer tumor-bearing mice was significantly inhibited. Compared with the WT group, the volume of tumor mass in mice was reduced by 57%, as shown in Table 4:
表4荷瘤小鼠肿瘤体积Table 4 Tumor volume of tumor-bearing mice
由图6A和表4结果可见:敲除TIGIT基因后的NK细胞在体内具有更强的抗肿瘤效应。此外,由图6B显示可见:荷瘤小鼠经NK细胞过继免疫治疗后,两组小鼠体重无明显差异,小鼠体重均随时间推移而缓慢增长,表明敲除TIGIT基因后的NK细胞与野生型NK细胞一样安全有效。It can be seen from the results in Figure 6A and Table 4 that the NK cells after knocking out the TIGIT gene have stronger anti-tumor effects in vivo. In addition, it can be seen from Figure 6B that after adoptive immunotherapy of NK cells in tumor-bearing mice, there was no significant difference in the body weight of the two groups of mice, and the body weight of the mice increased slowly over time, indicating that the NK cells after the knockout of the TIGIT gene are similar to As safe and effective as wild-type NK cells.
综上所述可见:本发明所获得的敲除TIGIT基因后的NK细胞在体内、体外相比普通NK细胞均具有更强的抗肿瘤活性,且敲除TIGIT基因后的NK细胞在体内具有良好的安全性,因此本发明所获得的敲除TIGIT基因后的NK细胞有望开发成为安全有效的抗肿瘤生物制剂,具有明显的应用前景和临床应用价值。To sum up, it can be seen that the NK cells obtained by the present invention after knocking out the TIGIT gene have stronger anti-tumor activity than ordinary NK cells in vivo and in vitro, and the NK cells after knocking out the TIGIT gene have good anti-tumor activity in vivo. Therefore, the NK cells obtained by the present invention after knocking out the TIGIT gene are expected to be developed into safe and effective anti-tumor biological preparations, and have obvious application prospects and clinical application value.
最后有必要在此说明的是:以上实施例只用于对本发明的技术方案作进一步详细地说明,不能理解为对本发明保护范围的限制,本领域的技术人员根据本发明的上述内容作出的一些非本质的改进和调整均属于本发明的保护范围。Finally, it is necessary to explain here: the above embodiments are only used to further describe the technical solutions of the present invention in detail, and should not be construed as limiting the protection scope of the present invention. Non-essential improvements and adjustments belong to the protection scope of the present invention.
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Application publication date: 20201225 Assignee: Zhuhai best onco Technology Co.,Ltd. Assignor: Shanghai University of Traditional Chinese Medicine Contract record no.: X2022310000038 Denomination of invention: An efficient method to knock out tigit gene in NK cells License type: Exclusive License Record date: 20220721 |