CN112080585B - Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof - Google Patents
Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof Download PDFInfo
- Publication number
- CN112080585B CN112080585B CN202010803388.4A CN202010803388A CN112080585B CN 112080585 B CN112080585 B CN 112080585B CN 202010803388 A CN202010803388 A CN 202010803388A CN 112080585 B CN112080585 B CN 112080585B
- Authority
- CN
- China
- Prior art keywords
- exonuclease
- nucleic acid
- amplification
- kit
- modified
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 238000000034 method Methods 0.000 title claims abstract description 79
- 238000001514 detection method Methods 0.000 title claims abstract description 54
- 241000711573 Coronaviridae Species 0.000 title claims abstract description 35
- 241001678559 COVID-19 virus Species 0.000 title description 12
- 239000000523 sample Substances 0.000 claims abstract description 94
- 150000007523 nucleic acids Chemical class 0.000 claims abstract description 46
- 102000039446 nucleic acids Human genes 0.000 claims abstract description 39
- 108020004707 nucleic acids Proteins 0.000 claims abstract description 39
- 238000011901 isothermal amplification Methods 0.000 claims abstract description 38
- 230000003321 amplification Effects 0.000 claims abstract description 36
- 238000003199 nucleic acid amplification method Methods 0.000 claims abstract description 36
- 108060002716 Exonuclease Proteins 0.000 claims abstract description 33
- 102000013165 exonuclease Human genes 0.000 claims abstract description 33
- 239000011324 bead Substances 0.000 claims abstract description 22
- 238000012360 testing method Methods 0.000 claims abstract description 16
- 102000004190 Enzymes Human genes 0.000 claims abstract description 12
- 108090000790 Enzymes Proteins 0.000 claims abstract description 12
- 238000001179 sorption measurement Methods 0.000 claims abstract description 7
- 238000005336 cracking Methods 0.000 claims abstract description 6
- 238000005520 cutting process Methods 0.000 claims abstract description 3
- 239000013592 cell lysate Substances 0.000 claims abstract 3
- 108020004414 DNA Proteins 0.000 claims description 26
- 101710147059 Nicking endonuclease Proteins 0.000 claims description 20
- 108091032973 (ribonucleotides)n+m Proteins 0.000 claims description 18
- 102000018120 Recombinases Human genes 0.000 claims description 14
- 108010091086 Recombinases Proteins 0.000 claims description 14
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 claims description 13
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 claims description 13
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims description 10
- 239000006166 lysate Substances 0.000 claims description 10
- 238000006243 chemical reaction Methods 0.000 claims description 9
- PCHJSUWPFVWCPO-UHFFFAOYSA-N gold Chemical compound [Au] PCHJSUWPFVWCPO-UHFFFAOYSA-N 0.000 claims description 9
- 108091028043 Nucleic acid sequence Proteins 0.000 claims description 8
- 238000006073 displacement reaction Methods 0.000 claims description 7
- 238000009396 hybridization Methods 0.000 claims description 7
- 238000007397 LAMP assay Methods 0.000 claims description 5
- 108060004795 Methyltransferase Proteins 0.000 claims description 5
- 229960002685 biotin Drugs 0.000 claims description 5
- 235000020958 biotin Nutrition 0.000 claims description 5
- 239000011616 biotin Substances 0.000 claims description 5
- 230000001419 dependent effect Effects 0.000 claims description 5
- 108010055863 gene b exonuclease Proteins 0.000 claims description 5
- JKMHFZQWWAIEOD-UHFFFAOYSA-N 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid Chemical compound OCC[NH+]1CCN(CCS([O-])(=O)=O)CC1 JKMHFZQWWAIEOD-UHFFFAOYSA-N 0.000 claims description 4
- 108010062580 Concanavalin A Proteins 0.000 claims description 4
- LTMHDMANZUZIPE-AMTYYWEZSA-N Digoxin Natural products O([C@H]1[C@H](C)O[C@H](O[C@@H]2C[C@@H]3[C@@](C)([C@@H]4[C@H]([C@]5(O)[C@](C)([C@H](O)C4)[C@H](C4=CC(=O)OC4)CC5)CC3)CC2)C[C@@H]1O)[C@H]1O[C@H](C)[C@@H](O[C@H]2O[C@@H](C)[C@H](O)[C@@H](O)C2)[C@@H](O)C1 LTMHDMANZUZIPE-AMTYYWEZSA-N 0.000 claims description 4
- KCXVZYZYPLLWCC-UHFFFAOYSA-N EDTA Chemical compound OC(=O)CN(CC(O)=O)CCN(CC(O)=O)CC(O)=O KCXVZYZYPLLWCC-UHFFFAOYSA-N 0.000 claims description 4
- 102100031780 Endonuclease Human genes 0.000 claims description 4
- 108010007577 Exodeoxyribonuclease I Proteins 0.000 claims description 4
- 108010046914 Exodeoxyribonuclease V Proteins 0.000 claims description 4
- 102100029075 Exonuclease 1 Human genes 0.000 claims description 4
- 102100037091 Exonuclease V Human genes 0.000 claims description 4
- 239000007995 HEPES buffer Substances 0.000 claims description 4
- 108091005804 Peptidases Proteins 0.000 claims description 4
- 239000004365 Protease Substances 0.000 claims description 4
- 102100037486 Reverse transcriptase/ribonuclease H Human genes 0.000 claims description 4
- 239000007983 Tris buffer Substances 0.000 claims description 4
- 230000009089 cytolysis Effects 0.000 claims description 4
- FFYPMLJYZAEMQB-UHFFFAOYSA-N diethyl pyrocarbonate Chemical compound CCOC(=O)OC(=O)OCC FFYPMLJYZAEMQB-UHFFFAOYSA-N 0.000 claims description 4
- LTMHDMANZUZIPE-PUGKRICDSA-N digoxin Chemical compound C1[C@H](O)[C@H](O)[C@@H](C)O[C@H]1O[C@@H]1[C@@H](C)O[C@@H](O[C@@H]2[C@H](O[C@@H](O[C@@H]3C[C@@H]4[C@]([C@@H]5[C@H]([C@]6(CC[C@@H]([C@@]6(C)[C@H](O)C5)C=5COC(=O)C=5)O)CC4)(C)CC3)C[C@@H]2O)C)C[C@@H]1O LTMHDMANZUZIPE-PUGKRICDSA-N 0.000 claims description 4
- 229960005156 digoxin Drugs 0.000 claims description 4
- LTMHDMANZUZIPE-UHFFFAOYSA-N digoxine Natural products C1C(O)C(O)C(C)OC1OC1C(C)OC(OC2C(OC(OC3CC4C(C5C(C6(CCC(C6(C)C(O)C5)C=5COC(=O)C=5)O)CC4)(C)CC3)CC2O)C)CC1O LTMHDMANZUZIPE-UHFFFAOYSA-N 0.000 claims description 4
- 229940125532 enzyme inhibitor Drugs 0.000 claims description 4
- 239000002532 enzyme inhibitor Substances 0.000 claims description 4
- 108010052305 exodeoxyribonuclease III Proteins 0.000 claims description 4
- 108091092562 ribozyme Proteins 0.000 claims description 4
- 238000005096 rolling process Methods 0.000 claims description 4
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 claims description 4
- 108020005187 Oligonucleotide Probes Proteins 0.000 claims description 3
- 108010092799 RNA-directed DNA polymerase Proteins 0.000 claims description 3
- 201000010099 disease Diseases 0.000 claims description 3
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 claims description 3
- 239000002751 oligonucleotide probe Substances 0.000 claims description 3
- 125000000446 sulfanediyl group Chemical group *S* 0.000 claims description 3
- OKTJSMMVPCPJKN-UHFFFAOYSA-N Carbon Chemical compound [C] OKTJSMMVPCPJKN-UHFFFAOYSA-N 0.000 claims description 2
- 229910052799 carbon Inorganic materials 0.000 claims description 2
- 230000006037 cell lysis Effects 0.000 claims description 2
- 239000003153 chemical reaction reagent Substances 0.000 claims description 2
- 238000002360 preparation method Methods 0.000 claims description 2
- 125000002924 primary amino group Chemical group [H]N([H])* 0.000 claims description 2
- MPLHNVLQVRSVEE-UHFFFAOYSA-N texas red Chemical compound [O-]S(=O)(=O)C1=CC(S(Cl)(=O)=O)=CC=C1C(C1=CC=2CCCN3CCCC(C=23)=C1O1)=C2C1=C(CCC1)C3=[N+]1CCCC3=C2 MPLHNVLQVRSVEE-UHFFFAOYSA-N 0.000 claims description 2
- 125000003396 thiol group Chemical class [H]S* 0.000 claims description 2
- 230000000865 phosphorylative effect Effects 0.000 claims 1
- 244000052769 pathogen Species 0.000 abstract description 4
- 230000004048 modification Effects 0.000 description 19
- 238000012986 modification Methods 0.000 description 19
- 239000002324 mouth wash Substances 0.000 description 9
- 229940051866 mouthwash Drugs 0.000 description 9
- 239000013642 negative control Substances 0.000 description 8
- 239000013641 positive control Substances 0.000 description 8
- 102000053602 DNA Human genes 0.000 description 7
- 210000004027 cell Anatomy 0.000 description 6
- 230000008569 process Effects 0.000 description 5
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 5
- 102000052510 DNA-Binding Proteins Human genes 0.000 description 4
- 238000005516 engineering process Methods 0.000 description 4
- 238000002474 experimental method Methods 0.000 description 4
- 238000003908 quality control method Methods 0.000 description 4
- 101710116602 DNA-Binding protein G5P Proteins 0.000 description 3
- SHIBSTMRCDJXLN-UHFFFAOYSA-N Digoxigenin Natural products C1CC(C2C(C3(C)CCC(O)CC3CC2)CC2O)(O)C2(C)C1C1=CC(=O)OC1 SHIBSTMRCDJXLN-UHFFFAOYSA-N 0.000 description 3
- 206010035664 Pneumonia Diseases 0.000 description 3
- 101710162453 Replication factor A Proteins 0.000 description 3
- 101710176758 Replication protein A 70 kDa DNA-binding subunit Proteins 0.000 description 3
- 101710176276 SSB protein Proteins 0.000 description 3
- 101710126859 Single-stranded DNA-binding protein Proteins 0.000 description 3
- 230000009471 action Effects 0.000 description 3
- 230000027455 binding Effects 0.000 description 3
- 239000002299 complementary DNA Substances 0.000 description 3
- QONQRTHLHBTMGP-UHFFFAOYSA-N digitoxigenin Natural products CC12CCC(C3(CCC(O)CC3CC3)C)C3C11OC1CC2C1=CC(=O)OC1 QONQRTHLHBTMGP-UHFFFAOYSA-N 0.000 description 3
- SHIBSTMRCDJXLN-KCZCNTNESA-N digoxigenin Chemical compound C1([C@@H]2[C@@]3([C@@](CC2)(O)[C@H]2[C@@H]([C@@]4(C)CC[C@H](O)C[C@H]4CC2)C[C@H]3O)C)=CC(=O)OC1 SHIBSTMRCDJXLN-KCZCNTNESA-N 0.000 description 3
- 238000000605 extraction Methods 0.000 description 3
- 239000012634 fragment Substances 0.000 description 3
- 239000001963 growth medium Substances 0.000 description 3
- 208000015181 infectious disease Diseases 0.000 description 3
- 239000000243 solution Substances 0.000 description 3
- 108020004638 Circular DNA Proteins 0.000 description 2
- 238000003556 assay Methods 0.000 description 2
- 230000015556 catabolic process Effects 0.000 description 2
- 230000000295 complement effect Effects 0.000 description 2
- 238000006731 degradation reaction Methods 0.000 description 2
- 238000003745 diagnosis Methods 0.000 description 2
- MHMNJMPURVTYEJ-UHFFFAOYSA-N fluorescein-5-isothiocyanate Chemical compound O1C(=O)C2=CC(N=C=S)=CC=C2C21C1=CC=C(O)C=C1OC1=CC(O)=CC=C21 MHMNJMPURVTYEJ-UHFFFAOYSA-N 0.000 description 2
- 238000000338 in vitro Methods 0.000 description 2
- 239000007788 liquid Substances 0.000 description 2
- 238000002156 mixing Methods 0.000 description 2
- 210000003296 saliva Anatomy 0.000 description 2
- 238000005070 sampling Methods 0.000 description 2
- 230000035945 sensitivity Effects 0.000 description 2
- 238000010200 validation analysis Methods 0.000 description 2
- UDGUGZTYGWUUSG-UHFFFAOYSA-N 4-[4-[[2,5-dimethoxy-4-[(4-nitrophenyl)diazenyl]phenyl]diazenyl]-n-methylanilino]butanoic acid Chemical compound COC=1C=C(N=NC=2C=CC(=CC=2)N(C)CCCC(O)=O)C(OC)=CC=1N=NC1=CC=C([N+]([O-])=O)C=C1 UDGUGZTYGWUUSG-UHFFFAOYSA-N 0.000 description 1
- LLIANSAISVOLHR-GBCQHVBFSA-N 5-[(3as,4s,6ar)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoic acid Chemical compound N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21.N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 LLIANSAISVOLHR-GBCQHVBFSA-N 0.000 description 1
- 241000894006 Bacteria Species 0.000 description 1
- 238000010453 CRISPR/Cas method Methods 0.000 description 1
- 108020004635 Complementary DNA Proteins 0.000 description 1
- 108020003215 DNA Probes Proteins 0.000 description 1
- 230000004544 DNA amplification Effects 0.000 description 1
- 239000003298 DNA probe Substances 0.000 description 1
- 230000004543 DNA replication Effects 0.000 description 1
- 230000006820 DNA synthesis Effects 0.000 description 1
- 101710096438 DNA-binding protein Proteins 0.000 description 1
- 108010042407 Endonucleases Proteins 0.000 description 1
- 241000233866 Fungi Species 0.000 description 1
- 102000014736 Notch Human genes 0.000 description 1
- 108010070047 Notch Receptors Proteins 0.000 description 1
- 108091034117 Oligonucleotide Proteins 0.000 description 1
- 108091093037 Peptide nucleic acid Proteins 0.000 description 1
- 206010036790 Productive cough Diseases 0.000 description 1
- 108020004518 RNA Probes Proteins 0.000 description 1
- 239000003391 RNA probe Substances 0.000 description 1
- 239000012980 RPMI-1640 medium Substances 0.000 description 1
- 238000011529 RT qPCR Methods 0.000 description 1
- 108020005091 Replication Origin Proteins 0.000 description 1
- 108020004682 Single-Stranded DNA Proteins 0.000 description 1
- 101710137500 T7 RNA polymerase Proteins 0.000 description 1
- 239000000980 acid dye Substances 0.000 description 1
- 239000011543 agarose gel Substances 0.000 description 1
- 238000012197 amplification kit Methods 0.000 description 1
- 238000003149 assay kit Methods 0.000 description 1
- 102000023732 binding proteins Human genes 0.000 description 1
- 108091008324 binding proteins Proteins 0.000 description 1
- 210000001124 body fluid Anatomy 0.000 description 1
- 239000010839 body fluid Substances 0.000 description 1
- 238000010804 cDNA synthesis Methods 0.000 description 1
- 230000001413 cellular effect Effects 0.000 description 1
- 238000004587 chromatography analysis Methods 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 238000001816 cooling Methods 0.000 description 1
- 125000004122 cyclic group Chemical group 0.000 description 1
- 230000007547 defect Effects 0.000 description 1
- 239000012154 double-distilled water Substances 0.000 description 1
- 241001493065 dsRNA viruses Species 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 238000001962 electrophoresis Methods 0.000 description 1
- 230000002255 enzymatic effect Effects 0.000 description 1
- 210000002919 epithelial cell Anatomy 0.000 description 1
- 210000003608 fece Anatomy 0.000 description 1
- 238000009472 formulation Methods 0.000 description 1
- 239000000499 gel Substances 0.000 description 1
- 210000005260 human cell Anatomy 0.000 description 1
- 238000001727 in vivo Methods 0.000 description 1
- 230000001404 mediated effect Effects 0.000 description 1
- 239000000203 mixture Substances 0.000 description 1
- 239000002853 nucleic acid probe Substances 0.000 description 1
- 238000002205 phenol-chloroform extraction Methods 0.000 description 1
- 230000026731 phosphorylation Effects 0.000 description 1
- 238000006366 phosphorylation reaction Methods 0.000 description 1
- 229920000642 polymer Polymers 0.000 description 1
- 230000002265 prevention Effects 0.000 description 1
- 108090000623 proteins and genes Proteins 0.000 description 1
- 230000005180 public health Effects 0.000 description 1
- 239000000376 reactant Substances 0.000 description 1
- 230000010076 replication Effects 0.000 description 1
- 238000010839 reverse transcription Methods 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 238000007790 scraping Methods 0.000 description 1
- 230000028327 secretion Effects 0.000 description 1
- 238000010583 slow cooling Methods 0.000 description 1
- 210000003802 sputum Anatomy 0.000 description 1
- 208000024794 sputum Diseases 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 208000024891 symptom Diseases 0.000 description 1
- ABZLKHKQJHEPAX-UHFFFAOYSA-N tetramethylrhodamine Chemical compound C=12C=CC(N(C)C)=CC2=[O+]C2=CC(N(C)C)=CC=C2C=1C1=CC=CC=C1C([O-])=O ABZLKHKQJHEPAX-UHFFFAOYSA-N 0.000 description 1
- QOFZZTBWWJNFCA-UHFFFAOYSA-N texas red-X Chemical compound [O-]S(=O)(=O)C1=CC(S(=O)(=O)NCCCCCC(=O)O)=CC=C1C(C1=CC=2CCCN3CCCC(C=23)=C1O1)=C2C1=C(CCC1)C3=[N+]1CCCC3=C2 QOFZZTBWWJNFCA-UHFFFAOYSA-N 0.000 description 1
- RYYWUUFWQRZTIU-UHFFFAOYSA-K thiophosphate Chemical compound [O-]P([O-])([O-])=S RYYWUUFWQRZTIU-UHFFFAOYSA-K 0.000 description 1
- 238000013518 transcription Methods 0.000 description 1
- 230000035897 transcription Effects 0.000 description 1
- 210000002700 urine Anatomy 0.000 description 1
- 238000012795 verification Methods 0.000 description 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
- C12Q1/701—Specific hybridization probes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
-
- Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
- Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
- Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
- Y02A50/00—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
- Y02A50/30—Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Zoology (AREA)
- Engineering & Computer Science (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Health & Medical Sciences (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Genetics & Genomics (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Virology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The invention provides a novel household rapid detection kit for coronaviruses and a method thereof, wherein the method comprises the following steps of S1: obtaining a component to be detected in a sample by adopting a magnetic bead adsorption method, and cracking the adsorbed cells or pathogens by a cracking method to release nucleic acid in the cells or pathogens; s2: performing isothermal amplification on the nucleic acid sample for a plurality of times, wherein the last isothermal amplification is isothermal amplification for generating single strands of nucleic acid or other methods for generating single strands; s3: hybridizing the single-stranded product obtained by the step S2 for multiple times at constant temperature amplification or other methods with a modified probe; s4: adding specific exonuclease into the hybridized product in the step S3, and cutting off redundant probes; s5: the product of S4 was detected. The kit comprises magnetic beads, cell lysate, isothermal amplification primers, isothermal amplification enzymes, probes, specific exonucleases and detection test paper; the kit and the method provided by the invention can be used for rapidly and accurately detecting the novel coronavirus at home.
Description
Technical Field
The invention relates to the technical field of biology, in particular to a novel rapid coronavirus detection kit and a method thereof.
Background
SARS-CoV-2 is a class of plus-sense single stranded RNA viruses. The current detection strategies are mainly divided into two types: 1. based on the detection of IgG and IgM antibodies, the detection method is suitable for a period of infection, has low applicability to the early stage of infection or the patients without symptoms infection, and has obvious limitations; 2. based on nucleic acid detection, this is currently the "gold standard". In terms of nucleic acid detection, three main categories are: (1) The conventional real-time quantitative fluorescence PCR detection is the most common method at present, one or more pairs of primers are designed aiming at a new coronavirus sequence, nucleic acid is extracted, reverse transcription is carried out, qPCR is carried out, and the detection result is the cycle number; (2) On-site detection methods that do not rely on large instruments, such as the us researchers developed CRISPR/Cas 12-based methods detect, which employ samples of nucleic acids extracted from nasal or pharyngeal swabs that do not meet the needs of patient self-sampling and self-handling; (3) Household rapid detection, i.e. a simple detection scheme in which a detector can self-sample, self-operate and self-read results.
The household detection is independent of a large instrument, and the novel coronavirus rapid detection method capable of sampling by itself can greatly improve the detection efficiency and safety of SARS-CoV-2, and provides a powerful means for epidemic prevention and control and national policy formulation. However, the prior art lacks a kit and a method for rapid and accurate rapid detection of novel coronaviruses.
Disclosure of Invention
The invention overcomes the defects of the prior art and provides a kit and a method for rapidly and accurately detecting novel coronaviruses.
In a first aspect of the present invention, there is provided a novel coronavirus (SARS-CoV-2) rapid assay kit and method thereof, comprising the steps of:
s1: obtaining a sample to be detected, obtaining a component to be detected in the sample by adopting a magnetic bead adsorption method, and cracking adsorbed cells or pathogens by a cracking method to release nucleic acid in the cells or pathogens; step S1 can be replaced by any other mode capable of obtaining sample nucleic acid, such as phenol chloroform extraction, adsorption column extraction and the like;
s2: performing multiple isothermal amplifications on the nucleic acid sample obtained in the step S1, wherein the final isothermal amplifications are performed to generate nucleic acid single strands; step S2 may be replaced by any other means capable of producing a single strand of nucleic acid, such as T7 exonuclease treatment, in vitro transcription, etc.;
s3: hybridizing the single-stranded product obtained by the step S2 through multiple isothermal amplification or other methods with a modified probe, wherein the probe type comprises a DNA probe, an RNA probe, an LNA modified probe, a peptide nucleic acid probe and the like;
s4: adding specific exonuclease into the hybridized product in the step S3, and cutting off redundant probes;
s5: the product of S4 was detected.
Preferably, step S2 further includes: and (2) adding reverse transcriptase into the RNA nucleic acid sample obtained in the step (S1) to enable the RNA nucleic acid sample to be reversely transcribed into a DNA nucleic acid sample.
Preferably, the sample in step S1 includes body fluid, mouthwash, saliva, nasal swab specimen and pharyngeal swab specimen, sputum, scraping, urine, feces, body secretions, tissue samples; still more preferably, the sample types are mouthwash, saliva, nasal swab specimens, and pharyngeal swab specimens.
Preferably, the magnetic beads used in the magnetic bead adsorption method in step S1 include concanavalin a coated magnetic beads.
Preferably, the probe in step S3 is a modified oligonucleotide probe; further preferably, the types of probe modifications include: biotin modification (Biotin), digoxigenin modification (Digoxigenin), fluorescein isothiocyanate modification (FITC), texas Red modification (Texas Red-X), phosphorylation modification (Phosphorination), amino modification (Aminorinker C6/7/12), sulfhydryl modification (thio C6/thio-C6S-S), thio modification (Phosphorothioate), fluorophore modification (FAM/HEX/ROX/CY-3/CY-5/JOE/TET etc.), quencher modification (MGB/BHQ 1/BHQ2/TAMRA etc.; still further preferably, the probe modification is: digoxin (DIGOXIGENIN) modification, BIOTIN (BIOTIN) modification.
Preferably, the base sequence of the probe is SEQ ID NO.1.
SEQ ID NO.1 CAGCCATAACCTTTCCACATACCGCAGACG。
Preferably, the specific exonuclease in step S4 comprises exonuclease VII, lambda exonuclease, T5 exonuclease, T7 exonuclease, exonuclease V, exonuclease III, recJ1 exonuclease, exonuclease I; still more preferably, the exonuclease is exonuclease VII.
Preferably, the lysis method of step S1 comprises cell lysis using a lysis solution.
Preferably, the lysate comprises 10mM HEPES,0.3%SDS,0.5%IGEPAL-CA630,1.5mM MgCl2,0.1% diethyl pyrocarbonate, 10mM KCl,50mM Tris,10mM EDTA,1%RNA enzyme inhibitor, and 1% aqueous protease solution.
Preferably, the isothermal amplification described in step S2 comprises a recombinase polymerase amplification technique, a recombinase-assisted amplification technique, a loop-mediated isothermal amplification technique, a helicase-dependent isothermal amplification technique, a strand displacement isothermal amplification technique, a nucleic acid sequence-based isothermal amplification technique, a rolling circle amplification technique, a nicking endonuclease amplification technique.
Isothermal amplification technique of recombinase polymerase (Recombinase Polymerase Amplification, RPA): the method mainly relies on three enzymes, namely recombinase capable of binding single-stranded nucleic acid (oligonucleotide primer), single-stranded DNA binding protein (SSB) and strand displacement DNA polymerase, and a protein-DNA complex formed by binding the recombinase and the primer can search for homologous sequences in double-stranded DNA. Once the primer has located the homologous sequence, a strand exchange reaction occurs to form and initiate DNA synthesis, allowing exponential amplification of the target region on the template. The replaced DNA strand binds to SSB, preventing further replacement. In this system, a synthetic event is initiated by two opposing primers. The whole process can be carried out at room temperature, and generally, a detectable level of amplification product can be obtained in about 10 minutes.
Recombinase-assisted amplification technique (RAA): a method for quickly amplifying nucleic acid at room temp features that the recombinase obtained from bacteria or fungus is used to bind the primer tightly to form a polymer, and after the primer is matched with template, the template DNA is melted by the aid of single-chain DNA binding protein and a new complementary DNA strand is formed by DNA polymerase.
Loop-mediated isothermal amplification technique (Loop-mediated isothermal amplification, LAMP): the LAMP method designs 4-6 primers for the region to be detected on the target gene, and utilizes the strand displacement DNA polymerase to carry out amplification reaction under the constant temperature condition, so that the amplification can be realized within 15-60 minutes at the temperature of 60-65 ℃, and a large amount of amplification products can be generated by the reaction.
Isothermal amplification technique of strand displacement: compared with the traditional method, the strand displacement isothermal amplification technology based on the notch enzyme, which is established by the technology, is simpler, more convenient, faster, environment-friendly and low in price, has very strong practical application potential, and is particularly suitable for field detection.
Rolling circle amplification: the rolling ring type replication is to synthesize new DNA ring molecules by using a piece of ring DNA as a template. A nick is first created in the replication origin of one single strand, and then new single strands are continuously synthesized using the other single strand as a template. The released newly synthesized single strand is or is first duplicated into double-stranded DNA, and after being cut into unit length by enzyme, circular double-stranded DNA molecule is formed; or the released newly synthesized single-stranded DNA is cut into single-stranded circular DNA molecules in unit length by enzyme and then copied into double-stranded circular DNA molecules.
Isothermal amplification techniques based on nucleic acid sequences (Nucleic acid sequence-based amplification, NASBA): nucleic acid sequence dependent amplification technology (NASBA) is an enzymatic process of specific in vitro isothermal amplification of nucleotide sequences mediated by two primers using RNA in the nucleic acid sequence as template. The whole reaction consists of a non-circulating phase and a circulating phase, wherein the non-circulating phase is firstly performed, under the action of AMV reverse transcriptase, primer 1 and template RNA are annealed to synthesize cDNA, RNA/DNA hybrid is formed, then RNaseH degrades RNA, primer 2 and cDNA are annealed to synthesize a second DNA complementary strand. The formed DNA double strand recognizes the promoter sequence by T7 RNA polymerase, catalyzes and synthesizes RNA, enters the circulation phase and carries out mass amplification on the template.
Helicase-dependent isothermal amplification technique (Helicase-dependent isothermal DNA amplification, HDA): the technology simulates the natural process of in vivo DNA replication, unwinds DNA double chains at constant temperature by using helicase, uses the DNA single chain binding protein to stabilize the unwound single chains to provide templates for primers, synthesizes complementary double chains under the action of DNA polymerase, and continuously repeats the cyclic amplification process to finally realize the exponential growth of target sequences.
The nicking endonuclease amplification reaction (nicking endonuclease amplification reaction, NEAR) is a strand displacement amplification technique in which, at the site of a nick formed by nicking with a nicking endonuclease, dNTPs are polymerized and extended from the 3' -end of the nick by the action of a polymerase to displace an isostatically positioned DNA strand, thereby forming a new complete DNA sequence containing the nicking endonuclease recognition site. This double strand is again cleaved by recognition by the endonuclease, and the "polymerization-nicking" cycle is initiated, producing a large number of displaced DNA single strands, resulting in exponential amplification.
Preferably, the multiple isothermal amplifications described in step S2 include one recombinase polymerase amplification and one nicking endonuclease amplification in sequence.
Preferably, the nicking endonuclease used for the nicking endonuclease amplification is Nb.BtsI, nt.BspQI, nt.CviPII, nt.BstNBI, nb.BsrDI, nb.BtsI, nt.AlwI, nb.BbvCI, nt.BbvCI, nb.BsmI, nb.BssSI, nt.Bssmai, and the strand displacing nucleic acid polymerase used for the nicking endonuclease amplification is Bst3.0 DNA polymerase, bst2.0 DNA polymerase, klenow DNA polymerase, phi29 DNA polymerase; still more preferably, the nicking enzyme used for nicking enzyme amplification is nb.btsi and the strand displacing nucleic acid polymerase used for nicking enzyme amplification is bst3.0 DNA polymerase.
Preferably, the forward primer has an alkaline sequence comprising the nicking site CACTGC and protecting base of the nicking endonuclease, and the forward primer has the sequence: SEQ ID NO.2; the reverse primer sequence is: SEQ ID NO.3.
SEQ ID NO.2 Wherein the boxes are protected bases, the single thick underline is a nicking site, and the double thin underline is a template binding sequence.
SEQ ID NO.3 CCCGTTTAAAAACGATTGTGCATCAGCTGAC。
Preferably, the method for detecting the hybridization product in step S5 includes a colloidal gold method, a colloidal carbon method; further preferably, the hybridization product is detected by a colloidal gold test strip.
In a second aspect of the invention, a novel rapid coronavirus detection kit is provided, which comprises magnetic beads, lysate, isothermal amplification primers, isothermal amplification enzymes, probes, specific exonucleases and detection test paper.
Preferably, the magnetic beads comprise concanavalin a coated magnetic beads.
Preferably, the probe contains biotin and digoxin modifications; further preferably, the base sequence of the probe is SEQ ID NO.1
Preferably, the specific exonucleases include exonuclease VII, lambda exonuclease, T5 exonuclease, T7 exonuclease, exonuclease V, exonuclease III, recJ1 exonuclease, exonuclease I; still more preferably, the exonuclease is exonuclease VII.
Preferably, the lysate comprises 10mM HEPES,0.3%SDS,0.5%IGEPAL-CA630,1.5mM MgCl2,0.1% diethyl pyrocarbonate, 10mM KCl,50mM Tris,10mM EDTA,1%RNA enzyme inhibitor, and 1% aqueous protease solution.
Preferably, the isothermal amplification enzymes comprise recombinase polymerase and nicking endonuclease; further preferably, the basic sequence of the isothermal amplification forward primer comprises a nicking site CACTGC and a protecting base of a nicking endonuclease, and the forward primer sequence is: SEQ ID NO.2; the reverse primer sequence is: SEQ ID NO.3.
Preferably, the test paper comprises a colloidal gold test strip.
In a third aspect, the invention provides the use of a kit according to the invention for the preparation of a reagent for detecting a novel coronavirus and/or for detecting a disease caused by a novel coronavirus.
Preferably, the disease caused by the novel coronavirus comprises novel coronavirus pneumonia.
Compared with the prior art, the invention has the following advantages: the invention develops a set of SARS-CoV-2 detection scheme capable of home self-detection. The early stage tests are carried out in DNA and RNA of SARS-CoV-2 standard substance, and has very high sensitivity and specificity; the detection of nucleic acid extracted from nasal and pharyngeal swabs of new patients, 5 cases with 4 cases, and 37 cycles, shows that this method has extremely high sensitivity. In addition, we develop a unique nucleic acid extraction method based on magnetic bead adsorption, and realize a complete set of processes of nucleic acid extraction, nucleic acid detection and result reading. The scheme does not depend on a large instrument, only needs two temperatures of 37 ℃ and 95 ℃ and has the condition of home detection.
Drawings
FIG. 1 shows the results of nucleic acid validation of cells in mouthwash based on magnetic bead enrichment and lysis of lysates in example 1 of the present invention;
FIG. 2 shows the result of cleavage of the probe by the probe and the single strand exonuclease in example 2 of the present invention;
FIG. 3 shows the results of the detection of novel coronavirus DNA and RNA standards in example 2 of the present invention;
FIG. 4 shows the results of the detection of purified nucleic acids in a nasal swab or pharyngeal swab of a patient with a new crown in example 3 of the present invention.
FIG. 5 shows the results of a test using a new crown patient mouthwash in example 4 of the present invention.
Detailed Description
Example 1 nucleic acid in cells was released with magnetic beads and lysate and subjected to PCR validation
1.1, rinsing with clear water;
1.2, adding 5ml of RPM 1640 culture medium, rinsing for 10s, and spitting the culture medium into a 50ml collecting tube;
1.3, sucking 1ml of mouthwash by a suction pipe, adding the mouthwash into 2ml of a B pipe containing magnetic beads, reversing and uniformly mixing, and standing for 10min at room temperature;
1.4, placing the pipe B on a magnetic rack, adsorbing for 10min, and discarding liquid;
1.5 removing the B tube from the magnetic rack, adding 100 μl of lysate, standing at room temperature for 5min at 95deg.C for 1min, taking out, cooling to room temperature, and adsorbing on the magnetic rack.
1.6, PCR verification of human cell nucleic acid: wherein the PCR template of the negative control is RPMI1640 culture medium, the PCR template of the positive control 1 is HEK293 genome DNA, and the PCR template of the positive control group 2 is cell nucleic acid obtained by adopting a commercial kit to lyse oral epithelial cells; the PCR templates of the experimental group are magnetic beads and lysate to release cellular nucleic acid.
PCR system:
PCR conditions:
wherein, the base sequence of the beta-actin-F primer is as follows: SEQ ID NO.4; the base sequence of the beta-actin-R primer is SEQ ID NO.5.
SEQ ID NO.4GGACTTCGAGCAAGAGATGG
SEQ ID NO.5:AGCACTGTGTTGGCGTACAG
1.7, 10. Mu.l of the amplified product was electrophoresed in a 2% agarose gel (containing a nucleic acid dye), and the gel was photographed.
Results: the electrophoresis results of the experimental group, the negative control group, the positive control group 1 and the positive control group 2 are shown in the attached figure 1. The above results prove that the magnetic beads and the lysate method provided by the invention can release nucleic acid in cells, and the effect of releasing nucleic acid is almost the same as that of a commercial kit.
Example 2 detection of novel coronavirus (SARS-CoV-2) Probe degradation assay
2.1, preparing a probe, designing and modifying the probe, wherein the nucleic acid sequence of the probe is as follows: SEQ ID NO.1, wherein the 5 'end is marked with digoxin modification and the 3' end is marked with biotin modification.
2.2, negative control group (sample 1) was water, experimental groups were: 1pmol of the modified probe (sample 2), 10pmol of the modified probe (sample 3), and 10pmol of the modified probe were digested with single strand exonuclease Exo VII (sample 4).
2.3, 50 mu l of the product in 2.2 is taken, a colloidal gold test strip is inserted into the product for standing chromatography, and the result is read within 5 minutes.
2.4, the results are shown in the figure 2, and the positions of the quality control lines (C) are all provided with strip displays, so that the experiment is successful; at the test line (T) position, sample 1 has no band negative, sample 2 has a band positive, sample 3 has a band positive, and sample 4 has no band negative. The detection of the probe can be directly realized, and the probe can not be detected after being cut by the exonuclease.
EXAMPLE 3 detection of novel coronavirus (SARS-CoV-2) DNA Standard and RNA Standard
3.1, preparing a detection sample: wherein the negative control group (sample 1) adopts water, and the experimental group adopts 1000 copies of SARS-CoV-2DNA fragment (sample 2), 10000 copies of SARS-CoV-2RNA standard (sample 3) and 1000 copies of SARS-CoV-2RNA standard (sample 4) respectively.
3.2, first isothermal amplification: and (3) using the detection sample obtained in the step (1) as a template, and using an RNA isothermal rapid amplification KIT (WLRN 8206KIT in the Anpul future) to carry out isothermal amplification, wherein the isothermal amplification step refers to the examination KIT instruction book.
The reaction system is as follows:
reaction conditions: 37℃for 12min.
Wherein, the forward reactant F is: SEQ ID NO.2;
the reverse primer R is: SEQ ID NO.3.
3.3, secondary amplification: 1. Mu.l of Nb.BtsI, 1. Mu.l of Bst3.0, 4. Mu.l of dNTPs were added and reacted at 37℃for 15min and at 95℃for 5min.
3.4, probe hybridization: mu.l of 10. Mu.M labeled probe (detection probe provided in example 2) was added and hybridization was performed at 95℃for 1min, followed by slow cooling to room temperature (about 15 min).
3.5, degradation of redundant probes: mu.l of the post-hybridization product was taken and 0.5. Mu.l of Exo VII was added thereto at 37℃for 5min.
3.6, detecting a colloidal gold test strip: 60 μl ddH2O was added, and after mixing, a colloidal gold test strip was inserted into the liquid, and the result was read within 5 minutes.
3.7, the results are shown in the figure 3, and the positions of the quality control lines (C) are all provided with strip displays, so that the experiment is successful; at the test line (T) position, no band of sample 1 is negative, no band of sample 2 is positive, no band of sample 3 is positive, and no band of sample 4 is positive. The method provided by the invention can detect SARS-CoV-2DNA and SARS-CoV-2RNA, and the detection accuracy is 100%.
Example 4 detection of novel coronavirus (SARS-CoV-2) by clinical pharyngeal swab sample
4.1, collecting throat swab samples of 5 cases of novel coronavirus pneumonia suspected patients, wherein the clinical nucleic acid diagnosis results are as follows: sample 1, positive; sample 2, negative; sample 3, negative; sample 4, positive; sample 5, negative.
4.2 nucleic acid was extracted from a throat swab sample using the method provided in example 1.
4.3, using water as negative control, 1000 copies of SARS-CoV-2DNA fragment as positive control, 5 cases of patient nucleic acid obtained in step 4.1 as experimental groups, and performing detection by the method of example 3.
4.4, the results are shown in the figure 4, and the positions of the quality control lines (C) are all provided with strip displays, so that the experiment is successful; at the position of the detection line (T), the negative control has no strip and is negative, the positive control has a strip and is positive, the sample 1 has a strip and is positive, the sample 2 has no strip and is negative, the sample 3 has no strip and is negative, the sample 4 has a strip and is positive, and the sample 5 has no strip and is negative. The result of the method provided by the invention for detecting suspected patients is completely consistent with the clinical detection result, which shows that the method has the potential of popularization and application for detecting novel coronaviruses.
Example 5 detection of novel coronavirus (SARS-CoV-2) by mouthwash sample
5.1, collecting mouthwash samples of 4 cases of novel patients diagnosed with coronavirus pneumonia, wherein the clinical nucleic acid diagnosis results are as follows: sample 1, positive; sample 2, positive; sample 3, positive; sample 4, positive.
5.2 nucleic acid in a mouthwash sample was extracted using the method provided in example 1.
5.3, using water as negative control, 1000 copies of SARS-CoV-2DNA fragment as positive control, and 4 cases of patient nucleic acid obtained in step 5.1 as experimental groups, the method of example 3 was used for detection.
5.4, the results are shown in the figure 5, and the positions of the quality control lines (C) are all provided with strip displays, so that the experiment is successful; at the position of the detection line (T), the negative control has no band and is negative, the positive control has a band and is positive, the sample 1 has a band and is positive, the sample 2 has a band and is negative, the sample 3 has a band and is positive, and the sample 4 has a band and is positive. The result of the method for detecting suspected patients is completely identical with the clinical detection result, which proves that the method has the potential of popularization and application of detecting novel coronaviruses.
The above description of the specific embodiments of the present invention has been given by way of example only, and the present invention is not limited to the above described specific embodiments. Any equivalent modifications and substitutions for the present invention will occur to those skilled in the art, and are also within the scope of the present invention. Accordingly, equivalent changes and modifications are intended to be included within the scope of the present invention without departing from the spirit and scope thereof.
Sequence listing
<110> Shanghai city public health clinical center
SHANGHAI EPIPROBE BIOTECHNOLOGY Co.,Ltd.
<120> novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof
<160> 5
<170> SIPOSequenceListing 1.0
<210> 1
<211> 30
<212> DNA/RNA
<213> Artificial sequence (Artificial Sequence)
<400> 1
cagccataac ctttccacat accgcagacg 30
<210> 2
<211> 60
<212> DNA/RNA
<213> Artificial sequence (Artificial Sequence)
<400> 2
cctacaactt gtgctaatgc actgccctac aacttgtgct aatgaccctg tgggttttac 60
<210> 3
<211> 31
<212> DNA/RNA
<213> Artificial sequence (Artificial Sequence)
<400> 3
cccgtttaaa aacgattgtg catcagctga c 31
<210> 4
<211> 20
<212> DNA/RNA
<213> Artificial sequence (Artificial Sequence)
<400> 4
ggacttcgag caagagatgg 20
<210> 5
<211> 20
<212> DNA/RNA
<213> Artificial sequence (Artificial Sequence)
<400> 5
agcactgtgt tggcgtacag 20
Claims (21)
1. A novel rapid detection method for coronaviruses with non-diagnostic purposes, which is characterized by comprising the following steps:
s1: obtaining a sample to be detected, obtaining a component to be detected in the sample by adopting a magnetic bead adsorption method, and cracking the adsorbed cells by a cracking method to release nucleic acid in the cells;
s2: performing multiple isothermal amplifications on the nucleic acid sample obtained in the step S1, wherein the final isothermal amplifications are performed to generate nucleic acid single strands;
s3: hybridizing the single-stranded product amplified in the step S2 at multiple constant temperature with the modified probe;
s4: adding specific exonuclease into the hybridized product in the step S3, and cutting off redundant probes;
s5: detecting the product of S4;
wherein, the magnetic beads used in the magnetic bead adsorption method in the step S1 comprise concanavalin A coated magnetic beads;
the method for detecting the hybridization product in step S5 includes a colloidal gold method and a colloidal carbon method.
2. The method for rapid detection of a novel coronavirus of non-diagnostic interest as recited in claim 1, wherein step S2 further comprises: and (2) adding reverse transcriptase into the RNA nucleic acid sample obtained in the step (S1) to enable the RNA nucleic acid sample to be reversely transcribed into a DNA nucleic acid sample.
3. The method according to claim 1, wherein the probe in step S3 is a modified oligonucleotide probe modified with one or more of biotin, digoxin, texas red, phosphorylating, amino, thiol, thio, fluorescent, or quencher.
4. The method for rapid detection of coronavirus of non-diagnostic interest as claimed in claim 3, wherein the probe has a base sequence of SEQ ID NO.1.
5. The method according to claim 1, wherein the specific exonuclease in step S4 is one or more of exonuclease VII, lambda exonuclease, T5 exonuclease, T7 exonuclease, exonuclease V, exonuclease III, recJ1 exonuclease, and exonuclease I.
6. The method according to claim 1, wherein the lysis method of step S1 comprises cell lysis using a lysate.
7. The method for rapid detection of novel coronaviruses of non-diagnostic interest as recited in claim 6, wherein said lysate comprises 10mM HEPES,0.3%SDS,0.5%IGEPAL-CA630,1.5mM MgCl 2 0.1% diethyl pyrocarbonate, 10mM KCl,50mM Tris,10mM EDTA,1%RNA enzyme inhibitor, and 1% aqueous protease.
8. The method according to claim 1, wherein the isothermal amplification in step S2 comprises a recombinase polymerase amplification technique, a recombinase-assisted amplification technique, a loop-mediated isothermal amplification technique, a helicase-dependent isothermal amplification technique, a strand displacement isothermal amplification technique, a nucleic acid sequence-based isothermal amplification technique, a rolling circle amplification, and a nicking endonuclease amplification reaction.
9. The rapid detection method of coronaviruses of non-diagnostic interest as recited in claim 8, wherein said multiple isothermal amplifications of step S2 comprise sequentially performing a single recombinase polymerase amplification and a single nicking endonuclease amplification.
10. The method according to claim 9, wherein the nicking endonuclease used for nicking endonuclease amplification is one or more of nb.btsi, nt.bspqi, nt.cvipii, nt.bstnbi, nb.bsrdi, nb.btsi, nt.alwi, nb.bvci, nt.bbvci, nb.bsmi, nb.bssi, nt.bsmai, and the strand displacing nucleic acid polymerase used for nicking endonuclease amplification is one or more of bst3.0 DNA polymerase, bst2.0 DNA polymerase, klenow DNA polymerase, phi29 DNA polymerase.
11. The method for rapid detection of novel coronaviruses of non-diagnostic interest as recited in claim 10, wherein the basic sequence of the forward primer comprises the nicking site CACTGC and the protecting base of the nicking endonuclease by multiple isothermal amplifications.
12. The rapid detection method of coronavirus of non-diagnostic interest as recited in claim 11, wherein the hybridization product is detected by a colloidal gold test strip.
13. A novel rapid coronavirus detection kit is characterized by comprising magnetic beads, cell lysate, isothermal amplification primers, isothermal amplification enzymes, probes, specific exonucleases and detection test paper; the magnetic beads comprise concanavalin A coated magnetic beads.
14. The kit of claim 13, wherein the probe is a modified oligonucleotide probe that is one or more of biotin-modified, digoxin-modified, texas red-modified, phosphorylated-modified, amino-modified, sulfhydryl-modified, thio-modified, fluorophore-modified, quencher-modified.
15. The kit according to claim 14, wherein the probe has a base sequence of SEQ ID NO.1.
16. The kit of claim 13, wherein the specific exonuclease is one or more of exonuclease VII, lambda exonuclease, T5 exonuclease, T7 exonuclease, exonuclease V, exonuclease III, recJ1 exonuclease, exonuclease I.
17. The kit of claim 13, wherein the cell lysate comprises 10mM HEPES,0.3%SDS,0.5%IGEPAL-CA630,1.5mM MgCl 2 0.1% diethyl pyrocarbonate, 10mM KCl,50mM Tris,10mM EDTA,1%RNA enzyme inhibitor, and 1% aqueous protease.
18. The kit of claim 13, wherein the isothermal amplification enzymes comprise a recombinase polymerase and a nicking endonuclease.
19. The kit of claim 18, wherein the basic sequence of the isothermal amplification forward primer comprises the nicking site CACTGC and protecting base of the nicking endonuclease.
20. The kit of claim 13, wherein the test strip comprises a colloidal gold test strip.
21. Use of a kit according to any one of claims 13-20 for the preparation of a reagent for detecting novel coronaviruses and/or for detecting diseases caused by novel coronaviruses.
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202010803388.4A CN112080585B (en) | 2020-08-11 | 2020-08-11 | Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof |
PCT/CN2021/109788 WO2022033334A1 (en) | 2020-08-11 | 2021-07-30 | Novel coronavirus (sars-cov-2) rapid test kit and method thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202010803388.4A CN112080585B (en) | 2020-08-11 | 2020-08-11 | Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof |
Publications (2)
Publication Number | Publication Date |
---|---|
CN112080585A CN112080585A (en) | 2020-12-15 |
CN112080585B true CN112080585B (en) | 2023-11-07 |
Family
ID=73735833
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202010803388.4A Active CN112080585B (en) | 2020-08-11 | 2020-08-11 | Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof |
Country Status (2)
Country | Link |
---|---|
CN (1) | CN112080585B (en) |
WO (1) | WO2022033334A1 (en) |
Families Citing this family (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN112080585B (en) * | 2020-08-11 | 2023-11-07 | 上海市公共卫生临床中心 | Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof |
CN112574960B (en) * | 2020-12-18 | 2022-09-23 | 中国科学院生物物理研究所 | siRNA for efficiently cutting SARS-CoV-2 genome and application thereof |
CN112795630A (en) * | 2021-03-22 | 2021-05-14 | 吉林大学 | Method for rapidly detecting loop-mediated isothermal amplification nucleic acid product by using magnetic bead probe |
CN113151599A (en) * | 2021-04-22 | 2021-07-23 | 厦门大学 | Primer group, reagent, kit and detection method for detecting novel coronavirus |
WO2022236891A1 (en) * | 2021-05-14 | 2022-11-17 | 沙滨 | Non-invasive detection kit for detecting novel coronavirus antigen, and detection method thereof |
CN114606322B (en) * | 2022-04-21 | 2023-07-28 | 中国人民解放军陆军军医大学第一附属医院 | Kit for one-step detection of long-chain RNA based on Argonaute protein and exponential amplification, detection method and application |
CN115532221B (en) * | 2022-09-29 | 2024-04-16 | 山东博科生物产业有限公司 | Fe for extracting novel coronavirus nucleic acid3O4-SiO2Magnetic bead |
CN117051173A (en) * | 2023-10-12 | 2023-11-14 | 上海基灵生物科技有限公司 | Cat digestive tract virus PCR detection method and application |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN107130024A (en) * | 2017-05-10 | 2017-09-05 | 山东师范大学 | Method for detecting microRNA based on helicase-dependent DNA isothermal amplification technology |
CN111187860A (en) * | 2020-02-25 | 2020-05-22 | 深圳闪量科技有限公司 | Novel coronavirus multiplex PCR rapid detection kit |
CN111235314A (en) * | 2020-03-13 | 2020-06-05 | 苏州白垩纪生物科技有限公司 | Virus inactivation, capture and real-time fluorescence isothermal amplification detection kit and application thereof |
Family Cites Families (4)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
BR122020012978B1 (en) * | 2010-08-13 | 2022-11-01 | Envirologix Inc | METHOD OF QUANTIFICATION OF A SPECIFIC PRODUCT IN A NEAR AMPLIFICATION REACTION |
CN111074007A (en) * | 2020-02-15 | 2020-04-28 | 上海迪飞医学检验实验室有限公司 | Isothermal amplification kit and primer probe set for detecting SARS-COV-2 virus |
CN111455099B (en) * | 2020-03-24 | 2021-12-03 | 武汉中帜生物科技股份有限公司 | Novel coronavirus (2019-nCoV) nucleic acid detection colloidal gold chromatography kit and application thereof |
CN112080585B (en) * | 2020-08-11 | 2023-11-07 | 上海市公共卫生临床中心 | Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof |
-
2020
- 2020-08-11 CN CN202010803388.4A patent/CN112080585B/en active Active
-
2021
- 2021-07-30 WO PCT/CN2021/109788 patent/WO2022033334A1/en active Application Filing
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN107130024A (en) * | 2017-05-10 | 2017-09-05 | 山东师范大学 | Method for detecting microRNA based on helicase-dependent DNA isothermal amplification technology |
CN111187860A (en) * | 2020-02-25 | 2020-05-22 | 深圳闪量科技有限公司 | Novel coronavirus multiplex PCR rapid detection kit |
CN111235314A (en) * | 2020-03-13 | 2020-06-05 | 苏州白垩纪生物科技有限公司 | Virus inactivation, capture and real-time fluorescence isothermal amplification detection kit and application thereof |
Non-Patent Citations (3)
Title |
---|
Rapid and visual detection of 2019 novel coronavirus (SARS-CoV-2) by a reverse transcription loop-mediated isothermal amplification assay;C. Yan 等;Clinical Microbiology and Infection;第26卷;第773-779页 * |
余海忠.食品营养学概论.中国农业大学出版社,2018,(第1版),第122页. * |
鞠熀先.核酸检测 DNA与microRNA分析方法.知识产权出版社,2015,(第1版),第26-27页. * |
Also Published As
Publication number | Publication date |
---|---|
WO2022033334A1 (en) | 2022-02-17 |
CN112080585A (en) | 2020-12-15 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN112080585B (en) | Novel coronavirus (SARS-CoV-2) rapid detection kit and method thereof | |
EP4202064A1 (en) | Kit and method for isothermal rapid detection of sars-cov-2 virus nucleic acid | |
CN110551846B (en) | Cpf1 kit for quickly detecting African swine fever virus nucleic acid and detection method thereof | |
WO2022033331A1 (en) | Kit and method for detecting nucleic acid and uses thereof | |
KR102592367B1 (en) | Systems and methods for clonal replication and amplification of nucleic acid molecules for genomic and therapeutic applications | |
CN109468384B (en) | Composite amplification detection kit for simultaneously detecting 45Y loci | |
US20100184015A1 (en) | Method for detection of xmrv | |
US9845495B2 (en) | Method and kit for detecting target nucleic acid | |
CN112981011B (en) | Primer composition for detecting SARS-CoV-2 and its application | |
CN111910017A (en) | Multiplex-time PCR (polymerase chain reaction) kit for detecting respiratory pathogens, method and application | |
CN110894530B (en) | Detection kit and detection method for gene mutation of colon cancer-related molecular marker | |
CN111926114A (en) | Multiplex-time PCR (polymerase chain reaction) kit for detecting parainfluenza virus, method and application | |
CN114410799A (en) | PCR-CRISPR/Cas13 a-based treponema pallidum detection method | |
CN116042878B (en) | Kit and detection method for detecting and distinguishing Brucella | |
CN117210584A (en) | Kit for multiplex detection of streptococcus pneumoniae, haemophilus influenzae, chlamydia pneumoniae and mycoplasma pneumoniae nucleic acids | |
CN115029345A (en) | Nucleic acid detection kit based on CRISPR and application thereof | |
CN113862333B (en) | Composition and method for oxidizing 5-methylcytosine by using same | |
CN112813200B (en) | Method for extremely short PCR amplification of nucleic acid, detection method and application | |
KR102366553B1 (en) | Method for detecting SARS-CoV-2 using CRISPR-Cas system and RT-LAMP primer set | |
CN113151599A (en) | Primer group, reagent, kit and detection method for detecting novel coronavirus | |
CN115058493B (en) | DNA probe for multiple nucleic acid detection, CRISPR-reverse dot hybridization nucleic acid detection system and application | |
CN116083655B (en) | DENV-crRNA for I-IV dengue virus detection, kit and application thereof | |
CN116694816A (en) | Isothermal multiplex detection reagent and detection method for SARS-CoV-2, influenza A virus and influenza B virus nucleic acid | |
CN117947212A (en) | Kit for multiple detection of four porcine diarrhea virus nucleic acids | |
CN116355896A (en) | Primer probe for detection, primer probe group and application thereof |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |