CN106127753A - CT image body surface handmarking's extraction method in a kind of surgical operation - Google Patents
CT image body surface handmarking's extraction method in a kind of surgical operation Download PDFInfo
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Abstract
本发明涉及一种外科手术中CT影像体表人工标记自动提取方法,包括以下步骤:S1、读入三维CT影像,并对CT影像进行体表分割,获得三维体表曲面;S2、在三维体表曲面对应的轴位二维轮廓影像上检测三维体表曲面的局部凹凸性,并自动提取经修补过的二维轮廓的奇异点,确定人工标记点的可能区域;S3、对所有轴位二维轮廓上轮廓奇异点,进行三维空间的聚类分析,在三维空间上形成奇异点集合的聚类,并通过聚类中心确定人工标记候补点的大致三维空间位置;S4、通过CT影像的骨骼分割影像对人工标记候补点进行验证,确定人工标记点的准确区域;S5、输出人工标记点。本发明不需采用任何三维空间的遍历匹配或三维空间滤波处理,标记点的提取速度非常快。
The invention relates to a method for automatically extracting body surface artificial marks from CT images in surgical operations, comprising the following steps: S1, reading in three-dimensional CT images, and performing body surface segmentation on the CT images to obtain three-dimensional body surface surfaces; Detect the local concave-convexity of the three-dimensional body surface on the axial two-dimensional contour image corresponding to the surface surface, and automatically extract the singular points of the repaired two-dimensional contour to determine the possible area of the artificial marker point; S3, for all axial two-dimensional Contour singular points on the three-dimensional contour, perform cluster analysis in three-dimensional space, form a cluster of singular point sets in three-dimensional space, and determine the approximate three-dimensional space position of the artificially marked candidate point through the cluster center; S4, skeleton through CT image Segment the image to verify the artificially marked candidate points, and determine the exact area of the artificially marked points; S5. Output the artificially marked points. The present invention does not need to use any three-dimensional space traversal matching or three-dimensional space filtering processing, and the extraction speed of the marked points is very fast.
Description
技术领域technical field
本发明涉及医学影像技术领域,更具体的说,是涉及一种外科手术中CT影像体表人工标记自动提取方法。The invention relates to the technical field of medical imaging, and more specifically relates to a method for automatically extracting artificial markers on the body surface of CT images in surgical operations.
背景技术Background technique
在计算机辅助外科手术和影像导航外科手术中,图像配准是重要的一环。由于术中的三维实时影像不容易获取,临床上普遍通过X光快速成像得到二维影像,而这样的二维影像缺乏三维体数据的空间信息往往不利于术中精准操控和空间解剖结构的识别。将术前体数据与术中实时获取的二维影像间的配准能够给手术提供实时三维空间信息,从而辅助外科手术精准操作。X光和CT影像间的配准属于是二维和三维的影像配准,而影像配准一般分为基于特征和基于灰度两种类型。基于特征的配准主要是依赖人工标记点,或者提取组织形态结构特征,通过这些特征在不同模态间的匹配,从而实现二维和三维影像的配准。特征的提取和匹配,在基于特征的配准过程中是非常重要的两个环节。基于灰度的影像配准不需要提取影像特征,但由于运算过程中依赖大量迭代优化搜索而使得配准速度普遍较慢,往往无法满足术中配准的实时性要求。因此,在实时的手术导航过程中,基于特征的配准方法被广泛采用。基于特征的配准方法中,特征提取是重要的环节,而人工标记由于具有先验的形状和成像特性,已被广泛应用于实时的基于二维三维配准的手术导航系统中。Image registration is an important part in computer-assisted surgery and image-guided surgery. Because intraoperative 3D real-time images are not easy to obtain, two-dimensional images are generally obtained through fast X-ray imaging in clinical practice, and such two-dimensional images lack the spatial information of 3D volume data, which is often not conducive to precise intraoperative manipulation and recognition of spatial anatomical structures . The registration between the preoperative body data and the two-dimensional images acquired in real time during the operation can provide real-time three-dimensional space information for the operation, thereby assisting the precise operation of the surgery. The registration between X-ray and CT images belongs to two-dimensional and three-dimensional image registration, and image registration is generally divided into two types: feature-based and gray-scale-based. Feature-based registration mainly relies on artificial marker points, or extracts tissue morphological features, and matches these features between different modalities to achieve registration of 2D and 3D images. Feature extraction and matching are two very important links in the process of feature-based registration. Image registration based on gray scale does not need to extract image features, but the registration speed is generally slow due to the reliance on a large number of iterative optimization searches in the calculation process, which often cannot meet the real-time requirements of intraoperative registration. Therefore, feature-based registration methods are widely adopted during real-time surgical navigation. In feature-based registration methods, feature extraction is an important link, and artificial markers have been widely used in real-time 2D and 3D registration-based surgical navigation systems due to their prior shape and imaging characteristics.
体表人工标记提取通常是基于图像特征的分割技术。由于人工标记在三维CT成像中具有与邻近皮肤等软组织完全不同的信号强度范围,因此基于影像灰度的阈值分割技术可以将人工标记从邻近体表分离出来。由于人工标记在CT成像中的信号值范围是波动的,不同的贴附位置具有不同的信号强度,基于阈值等分割技术容易产生误分割和漏分割的现象。而且,人工标记紧贴体表、有时非常邻近体内骨骼,而人工标记与骨骼在CT影像中都具有非常高的信号值,这种粘连极易造成提取错误。在人工标记数量有限的情况下,半自动的交互阈值分割可以提高人工标记提取的位置精度和准确性。但是,当人工标记数据较多且在体表位置分布较广泛时,这种交互的阈值分割方法会给操作人员带来较大的负担和时间耗费。Body surface manual marker extraction is usually a segmentation technique based on image features. Since artificial markers have a completely different signal intensity range from that of adjacent skin and other soft tissues in 3D CT imaging, threshold segmentation technology based on image grayscale can separate artificial markers from adjacent body surfaces. Since the signal value range of artificial markers in CT imaging fluctuates, and different attachment locations have different signal intensities, segmentation techniques based on thresholds are prone to mis-segmentation and missed segmentation. Moreover, artificial markers are closely attached to the body surface, sometimes very close to bones in the body, and both artificial markers and bones have very high signal values in CT images, and this kind of adhesion can easily cause extraction errors. When the number of human markers is limited, semi-automatic interactive threshold segmentation can improve the positional precision and accuracy of human marker extraction. However, when there is a large amount of manually labeled data and the distribution of the body surface is wide, this interactive threshold segmentation method will bring a large burden and time consumption to the operator.
由于人工标记在CT成像中的信号值范围是波动的,不同的贴附位置具有不同的信号强度,基于阈值等分割技术容易产生误分割和漏分割的现象。而且,人工标记紧贴体表、有时非常邻近体内骨骼,而人工标记与骨骼在CT影像中都具有非常高的信号值,这种粘连极易造成提取错误。在人工标记数量有限的情况下,半自动的交互阈值分割可以提高人工标记提取的位置精度和准确性。但是,当人工标记数据较多且在体表位置分布较广泛时,这种交互的阈值分割方法会给操作人员带来较大的负担和时间耗费。Since the signal value range of artificial markers in CT imaging fluctuates, and different attachment locations have different signal intensities, segmentation techniques based on thresholds are prone to mis-segmentation and missed segmentation. Moreover, artificial markers are closely attached to the body surface, sometimes very close to bones in the body, and both artificial markers and bones have very high signal values in CT images, and this kind of adhesion can easily cause extraction errors. When the number of human markers is limited, semi-automatic interactive threshold segmentation can improve the positional precision and accuracy of human marker extraction. However, when there is a large amount of manually labeled data and the distribution of the body surface is wide, this interactive threshold segmentation method will bring a large burden and time consumption to the operator.
在人工标记模型确定的情况下,基于模型匹配的方法也被广泛应用于体表标记的定位。这类基于三维模型匹配的技术需要搜索遍历整个三维曲面使得运算复杂度较高,而且三维曲面的提取精度会严重影响标记的匹配的结果。当标记尺寸较小且CT成像质量不太高或存在噪声干扰的情况下,这种基于模型和曲面匹配的性能会显著降低。In the case of manual marker model determination, model matching-based methods are also widely used for localization of body surface markers. This type of technology based on 3D model matching needs to search and traverse the entire 3D surface, which makes the calculation complexity high, and the extraction accuracy of the 3D surface will seriously affect the matching result of the mark. The performance of this model- and surface-based matching degrades significantly when the marker size is small and the CT imaging quality is not too high or there is noise interference.
基于三维表面重建和三维多尺度滤波的体表标记提取技术,首先在运算复杂度上非常高,体表特征的提取很难做到实时处理。另外三维曲面的多尺度滤波容易引起空间位置的漂移,人工标记点的位置精度也会受到较大的影响。类似的,三维表面的重建精度同样决定人工标记点定位的性能,当人工标记在三维影像中尺度较小且三维表面重建性能无法客观表述体表标记存在时的三维局部凹凸性,该技术方法很难稳定、精确的自动提取人工标记。The body surface marker extraction technology based on 3D surface reconstruction and 3D multi-scale filtering, first of all, has very high computational complexity, and the extraction of body surface features is difficult to achieve real-time processing. In addition, the multi-scale filtering of the three-dimensional surface is likely to cause the drift of the spatial position, and the position accuracy of the artificially marked points will also be greatly affected. Similarly, the reconstruction accuracy of the 3D surface also determines the performance of artificial marker point positioning. When the artificial markers are small in 3D images and the 3D surface reconstruction performance cannot objectively express the 3D local concave-convexity of the body surface markers, this technical method is very difficult. It is difficult to automatically extract artificial markers stably and accurately.
发明内容Contents of the invention
有鉴于此,有必要针对上述问题,提供一种外科手术中CT影像体表人工标记自动提取方法,不需采用任何三维空间的遍历匹配或三维空间滤波处理,标记点的提取速度非常快。In view of this, it is necessary to address the above problems and provide a method for automatically extracting artificial markers on the body surface of CT images during surgery, which does not need any three-dimensional space traversal matching or three-dimensional space filtering processing, and the extraction speed of marker points is very fast.
为了实现上述目的,本发明的技术方案如下:In order to achieve the above object, the technical scheme of the present invention is as follows:
一种外科手术中CT影像体表人工标记自动提取方法,包括以下步骤:A method for automatically extracting artificial markers from CT image body surfaces during surgery, comprising the following steps:
S1、读入三维CT影像,并对CT影像进行体表分割,获得三维体表曲面;S1. Read in the 3D CT image, and perform body surface segmentation on the CT image to obtain a 3D body surface surface;
S2、在三维体表曲面对应的轴位二维轮廓影像上检测三维体表曲面的局部凹凸性,并自动提取经修补过的二维轮廓的奇异点,确定人工标记点的可能区域;S2. Detect the local concavity and convexity of the three-dimensional body surface on the axial two-dimensional contour image corresponding to the three-dimensional body surface surface, and automatically extract the singular points of the repaired two-dimensional contour, and determine the possible area of the artificial marker point;
S3、对所有轴位二维轮廓上轮廓奇异点,进行三维空间的聚类分析,在三维空间上形成奇异点集合的聚类,并通过聚类中心确定人工标记候补点的大致三维空间位置;S3. Perform clustering analysis in three-dimensional space on the contour singular points on all axial two-dimensional contours, form a cluster of singular point sets in three-dimensional space, and determine the approximate three-dimensional space position of the manually marked candidate point through the cluster center;
S4、通过CT影像的骨骼分割影像对人工标记候补点进行验证,确定人工标记点的准确区域;S4. Verifying the artificially marked candidate points through the bone segmentation image of the CT image, and determining the accurate area of the artificially marked points;
S5、输出人工标记点。S5. Outputting artificial marking points.
作为优选的,所述步骤S1具体包括:As preferably, the step S1 specifically includes:
S11、通过区域增长的方法清除体表外杂质,确定体表大致轮廓,并将其它大致轮廓对应位置以外的区域CT值置零,得到粗分割数据;S11. Remove impurities outside the body surface through the method of region growth, determine the rough outline of the body surface, and set the CT value of the area other than the corresponding position of the rough outline to zero to obtain rough segmentation data;
S12、对体表粗分割体数据的每一条轴位体表二维轮廓进行修补处理。S12. Perform repair processing on each axial body surface two-dimensional contour of the body surface rough segmented volume data.
作为优选的,所述步骤S11具体包括:As preferably, the step S11 specifically includes:
S111、在人体体表外选择种子点,通过区域增长清除体表外杂质;S111. Select seed points outside the human body surface, and remove impurities outside the body surface through region growth;
S112、采用三维边缘检测处理区域增长处理后的结果,确定体表的大致轮廓;S112. Using three-dimensional edge detection to process the result of region growth processing, determine the approximate outline of the body surface;
S113、将大致轮廓对应位置的CT值保持不变,而将其它大致轮廓对应位置以外的区域CT值置零。S113. Keep the CT value of the position corresponding to the rough outline unchanged, and set the CT value of other regions other than the corresponding position of the rough outline to zero.
作为优选的,所述步骤S12具体包括:As preferably, said step S12 specifically includes:
S121、对于轮廓线上存在的间断,进行自动补齐;S121. For the discontinuity existing on the contour line, perform automatic completion;
S122、提取轮廓线集合的主轮廓;S122. Extract the main contour of the contour line set;
S123、对于主轮廓线之外出现的细小分支,进行自动枝节删除;S123. For the small branches that appear outside the main outline, perform automatic branch deletion;
S124、对所有轴位切片影像进行轮廓修补处理,得到最终的体表分割结果。S124. Perform contour repair processing on all axial slice images to obtain a final body surface segmentation result.
作为优选的,所述步骤S2中采用多尺度的轮廓奇异点检测方法,通过轮廓多尺度的局部轮廓曲线的曲率极值确定人工标记点出现在体表轮廓上的奇异点,进而确定人工标记的区域。Preferably, the multi-scale contour singular point detection method is adopted in the step S2, and the singular point where the artificial marker point appears on the body surface contour is determined by the curvature extreme value of the multi-scale local contour curve of the contour, and then the artificial marker is determined. area.
作为优选的,所述多尺度的轮廓奇异点检测方法具体包括:Preferably, the multi-scale contour singular point detection method specifically includes:
分别针对轮廓边缘离散点集合{(xi,yi:i=0,…,n-1)}的x和y一维向量分别进行多尺度滤波,通过高斯滤波器进行轮廓的多尺度平滑处理,高斯函数的表达式如下:Multi-scale filtering is performed on the x and y one-dimensional vectors of the discrete point sets {(x i , y i :i=0,...,n-1)} respectively on the contour edge, and multi-scale smoothing of the contour is performed through a Gaussian filter , the expression of the Gaussian function is as follows:
其中σ是高斯函数的标准偏差,即多尺度滤波器的尺度因子;where σ is the standard deviation of the Gaussian function, which is the scale factor of the multi-scale filter;
在直角坐标系中对轮廓点{(xi,yi:i=0,…,n-1)}进行参数化表达为P(u)=[x(u),y(u)],则轮廓曲线的曲率计算公式为:In the Cartesian coordinate system, the contour point {(x i ,y i :i=0,...,n-1)} is parameterized and expressed as P(u)=[x(u),y(u)], then The formula for calculating the curvature of the contour curve is:
其中x′,y′,x″和y″分别定义如下:Where x', y', x" and y" are respectively defined as follows:
式中,u为曲线参数化参变量且u∈[0,1],ui为轮廓点(xi,yi)所对应的曲线参数值,△u为参数曲线上的微偏移量,取0.01;通过确定多个尺度上的曲率极值点,检测出轮廓上稳定存在的奇异点。In the formula, u is the curve parameterization parameter and u∈[0,1], u i is the curve parameter value corresponding to the contour point ( xi , y i ), △u is the micro-offset on the parameter curve, Take 0.01; by determining the curvature extremum points on multiple scales, the stable singular points on the contour are detected.
作为优选的,所述步骤S3具体包括:As preferably, said step S3 specifically includes:
S31、对所有轴位二维轮廓上轮廓奇异点,进行三维空间的聚类分析,在三维空间上形成个候补奇异点集合的聚类;S31. Perform cluster analysis in three-dimensional space on the contour singular points on all axial two-dimensional contours, and form a cluster of candidate singular point sets in three-dimensional space;
S32、通过聚类法对奇异点集合进行聚类分析,从而确定聚类的中心位置。S32. Perform a cluster analysis on the singular point set by a clustering method, so as to determine the center position of the cluster.
作为优选的,所述步骤S32中采用k-mean聚类法对奇异点集合进行聚类分析,具体包括:Preferably, in the step S32, the k-mean clustering method is used to perform cluster analysis on the singular point set, which specifically includes:
S321、从N个候补奇异点集合中随机选取K个作为初始聚类中心;S321. Randomly select K from the N candidate singular point sets as the initial clustering center;
S322、对剩余的每个奇异点,测量其到每个聚类中心的距离,并把它归到最近的聚类中心;S322. For each remaining singular point, measure its distance to each cluster center, and classify it to the nearest cluster center;
S323、重新计算已经得到的各个类的聚类中心c[i]={所有标记为i的data[j]之和}/标记为i的个数;S323. Recalculate the obtained cluster centers of each class c[i]={sum of all data[j] marked as i}/number of marked i;
S324、迭代S32、S23直至新的聚类中心与原聚类中心相等或小于指定阈值,算法结束,得到人工标记候补点的三维空间位置。S324, iterate S32, S23 until the new cluster center is equal to the original cluster center or less than the specified threshold, the algorithm ends, and the three-dimensional space position of the manually marked candidate point is obtained.
作为优选的,所述步骤S4中,通过多层次的阈值分割多目标不连续区域,将骨骼和人工标记点统一的分割出来,在骨骼分割的三维体数据中检索奇异点聚类形成人工标记候选点坐标,确定人工标记点区域。Preferably, in the step S4, multi-level thresholds are used to segment the multi-target discontinuous region, the bones and artificial marker points are uniformly segmented, and the singular point clusters are retrieved in the three-dimensional volume data of the bone segmentation to form artificial marker candidates. Point coordinates, to determine the artificially marked point area.
与现有技术相比,本发明的有益效果在于:Compared with prior art, the beneficial effect of the present invention is:
1、快速三维体表提取采用了二维轮廓修补,在体表提取方面具有速度快、精度高的特征,CT成像方面的各种噪声和未知畸变都可能引起体表的“过分割”(分割结果中体表与邻近体内组织的粘连)或“欠分割”(分割结果中体表出现空洞或不连续情况),而本发明提出通过二维轮廓修补提高三维体表曲面提取性能完全可以消除上述“过分割”和“欠分割”情况;1. Fast 3D body surface extraction adopts 2D contour repair, which has the characteristics of fast speed and high precision in body surface extraction. Various noises and unknown distortions in CT imaging may cause body surface "over-segmentation" (segmentation In the results, the adhesion between the body surface and adjacent tissues in the body) or "under-segmentation" (cavities or discontinuities appear in the body surface in the segmentation results), and the present invention proposes to improve the extraction performance of the three-dimensional body surface through two-dimensional contour repair, which can completely eliminate the above-mentioned "Over-segmentation" and "under-segmentation" situations;
2、由于标记点和体表的三维局部凹凸性在三维空间很难稳定和精准检测、且存在运算复杂度过高的不足,本发明提出了通过分析三维体表曲面的轴位二维轮廓存在曲率极值的凹凸特性,从而确定人工标记在二维轮廓上的位置;由于某一个人工标记在CT中的几个连续轴位轮廓上都形成凹凸,那么连续几个轴位层面位置非常相近的曲率极值点,就可以确定人工标记在三维空间的位置,并且可以排除其它非人工标记的影响;因此,噪声形成的某一层凹凸特征误算很难影响到真实的人工标记的提取,因为噪声很难在位置非常相近的几个连续轴轮廓上都形成凹凸;2. Since the three-dimensional local concave-convexity of the marker points and the body surface is difficult to detect stably and accurately in three-dimensional space, and there is a shortage of high computational complexity, the present invention proposes to analyze the axial two-dimensional profile of the three-dimensional body surface The concave-convex characteristics of the extreme value of curvature can determine the position of the artificial marker on the two-dimensional contour; since a certain artificial marker forms concave-convex on several consecutive axial contours in CT, the positions of several consecutive axial slices are very similar The extreme point of curvature can determine the position of artificial markers in three-dimensional space, and can exclude the influence of other non-artificial markers; therefore, the miscalculation of a certain layer of concave-convex features formed by noise is difficult to affect the extraction of real artificial markers, because It is difficult for noise to form bumps on the contours of several continuous axes that are very close together;
3、由于本发明方法没有采用任何三维空间的遍历匹配或三维空间滤波处理,标记点的提取速度非常快;三维曲面的修补,转化为二维曲线轮廓的修补,而三维空间曲面的局部凹凸检测,转化为二维曲线轮廓的局部曲率极值检测,在运算代价上将显著降低。3. Since the inventive method does not adopt any three-dimensional space traversal matching or three-dimensional space filtering process, the extraction speed of the marked points is very fast; the repair of the three-dimensional curved surface is converted into the repair of the two-dimensional curve profile, and the local concave-convex detection of the three-dimensional curved surface , which is transformed into a local curvature extremum detection of a two-dimensional curve profile, which will significantly reduce the computational cost.
附图说明Description of drawings
图1为本发明实施例的方法流程图;Fig. 1 is the method flowchart of the embodiment of the present invention;
图2是本发明实施例中标记后的CT影像示意图;Fig. 2 is a schematic diagram of a marked CT image in an embodiment of the present invention;
图3为本发明实施例中粗分割示意图;FIG. 3 is a schematic diagram of coarse segmentation in an embodiment of the present invention;
图4为本发明实施例轮廓精细修补后效果图;Fig. 4 is the effect diagram after fine contour repair of the embodiment of the present invention;
图5为本发明实施例中轮廓多尺度奇异点检测示意图;Fig. 5 is a schematic diagram of contour multi-scale singular point detection in an embodiment of the present invention;
图6是本发明实施例中轴位连续切片上轮廓奇异点检测结果示意图;Fig. 6 is a schematic diagram of detection results of contour singular points on continuous axial slices in an embodiment of the present invention;
图7是本发明实施例中奇异点三维空间聚类示意图;Fig. 7 is a schematic diagram of three-dimensional spatial clustering of singular points in an embodiment of the present invention;
图8是本发明实施例中骨骼分割含人工标记影像和人工标记点提取结果示意图。Fig. 8 is a schematic diagram of bone segmentation including artificially marked images and artificially marked point extraction results in the embodiment of the present invention.
具体实施方式detailed description
下面结合附图和实施例对本发明所述的一种外科手术中CT影像体表人工标记自动提取方法作进一步说明。A method for automatically extracting body surface manual markers from CT images in surgical operations according to the present invention will be further described below in conjunction with the accompanying drawings and embodiments.
以下是本发明所述的一种外科手术中CT影像体表人工标记自动提取方法的最佳实例,并不因此限定本发明的保护范围。The following is the best example of a method for automatically extracting artificial markers on the body surface of CT images in surgical operations according to the present invention, which does not limit the protection scope of the present invention.
图1示出了一种外科手术中CT影像体表人工标记自动提取方法,对计算机辅助外科手术导航中CT影像体表人工标记进行全自动快速提取,本发明的方法包括以下步骤:Fig. 1 has shown a kind of automatic extraction method of manual mark of CT image body surface in the surgical operation, carries out automatic fast extraction to the manual mark of CT image body surface in computer-aided surgical navigation, and method of the present invention comprises the following steps:
S1、读入三维CT影像,并对CT影像进行体表分割,获得三维体表曲面;S1. Read in the 3D CT image, and perform body surface segmentation on the CT image to obtain a 3D body surface surface;
S2、在三维体表曲面对应的轴位二维轮廓影像上检测三维体表曲面的局部凹凸性,并自动提取经修补过的二维轮廓的奇异点,确定人工标记点的可能区域;S2. Detect the local concavity and convexity of the three-dimensional body surface on the axial two-dimensional contour image corresponding to the three-dimensional body surface surface, and automatically extract the singular points of the repaired two-dimensional contour, and determine the possible area of the artificial marker point;
S3、对所有轴位二维轮廓上轮廓奇异点,进行三维空间的聚类分析,在三维空间上形成奇异点集合的聚类,并通过聚类中心确定人工标记候补点的大致三维空间位置;S3. Perform clustering analysis in three-dimensional space on the contour singular points on all axial two-dimensional contours, form a cluster of singular point sets in three-dimensional space, and determine the approximate three-dimensional space position of the manually marked candidate point through the cluster center;
S4、通过CT影像的骨骼分割影像对人工标记候补点进行验证,确定人工标记点的准确区域;S4. Verifying the artificially marked candidate points through the bone segmentation image of the CT image, and determining the accurate area of the artificially marked points;
S5、输出人工标记点。S5. Outputting artificial marking points.
在本实施例中,所述步骤S1具体包括:In this embodiment, the step S1 specifically includes:
S11、通过区域增长的方法清除体表外杂质,确定体表大致轮廓,并将其它大致轮廓对应位置以外的区域CT值置零,得到粗分割数据;S11. Remove impurities outside the body surface through the method of region growth, determine the rough outline of the body surface, and set the CT value of the area other than the corresponding position of the rough outline to zero to obtain rough segmentation data;
S12、对体表粗分割体数据的每一条轴位体表二维轮廓进行修补处理。S12. Perform repair processing on each axial body surface two-dimensional contour of the body surface rough segmented volume data.
在本实施例中,所述步骤S11具体包括:In this embodiment, the step S11 specifically includes:
S111、在人体体表外选择种子点,通过区域增长清除体表外杂质;S111. Select seed points outside the human body surface, and remove impurities outside the body surface through region growth;
S112、采用三维边缘检测处理区域增长处理后的结果,确定体表的大致轮廓;S112. Using three-dimensional edge detection to process the result of region growth processing, determine the approximate outline of the body surface;
S113、将大致轮廓对应位置的CT值保持不变,而将其它大致轮廓对应位置以外的区域CT值置零。S113. Keep the CT value of the position corresponding to the rough outline unchanged, and set the CT value of other regions other than the corresponding position of the rough outline to zero.
作为优选的,所述步骤S12具体包括:As preferably, said step S12 specifically includes:
S121、对于轮廓线上存在的间断,进行自动补齐;S121. For the discontinuity existing on the contour line, perform automatic completion;
S122、提取轮廓线集合的主轮廓;S122. Extract the main contour of the contour line set;
S123、对于主轮廓线之外出现的细小分支,进行自动枝节删除;S123. For the small branches that appear outside the main contour line, perform automatic branch deletion;
S124、对所有轴位切片影像进行轮廓修补处理,得到最终的体表分割结果,如图2所示,左侧图为CT影像失位图,右侧图为CT影像轴位图;本发明实现了快速三维体表提取采用了二维轮廓修补,在体表提取方面具有速度快、精度高的特征。CT成像方面的各种噪声和未知畸变都可能引起体表的“过分割”(分割结果中体表与邻近体内组织的粘连)或“欠分割”(分割结果中体表出现空洞或不连续情况),而本发明提出通过二维轮廓修补提高三维体表曲面提取性能完全可以消除上述“过分割”和“欠分割”情况。S124. Perform contour repair processing on all axial slice images to obtain the final body surface segmentation result, as shown in FIG. 2 , the left figure is a CT image dislocation map, and the right figure is a CT image axial map; the present invention realizes Fast 3D body surface extraction adopts 2D contour repair, which has the characteristics of fast speed and high precision in body surface extraction. Various noises and unknown distortions in CT imaging may cause "over-segmentation" of the body surface (adhesion between the body surface and adjacent tissues in the body in the segmentation result) or "under-segmentation" (cavity or discontinuity in the body surface in the segmentation result). ), and the present invention proposes to improve the extraction performance of the three-dimensional body surface surface through two-dimensional contour repair, which can completely eliminate the above-mentioned "over-segmentation" and "under-segmentation".
由于人工标记体表紧贴在体表时,体表曲面上会存在三维局部凹凸性,本发明将在三维体表曲面对应的轴位二维影像上检测这种三维局部凹凸性,也就是在经过修补的二维主轮廓上自动提取奇异点;通过观察发现,有人工标记点出现的体表轮廓相比未出现人工标记的提取区域普遍凸出,而且这种凸出的形状具有一定的变化。本实施例中,本发明提出了一种多尺度的轮廓奇异点检测方法,通过轮廓多尺度的局部极值确定这种凸出点,从而确定人工标记的可能区域,所述步骤S2中采用多尺度的轮廓奇异点检测方法,通过轮廓多尺度的局部轮廓曲线的曲率极值确定人工标记点出现在体表轮廓上的奇异点,进而确定人工标记的区域,如图3、图4所示,图3中,左图为粗分割体表渲染结果,胸部七个体表标记点凸起可见;右图为粗分割轴位轮廓线,体表标记引起轮廓线间断和缺失;图4为轮廓精细修补后效果。When the artificially marked body surface is closely attached to the body surface, there will be three-dimensional local unevenness on the curved surface of the body surface. Singular points are automatically extracted from the repaired two-dimensional main contour; through observation, it is found that the body surface contour with artificial markers is generally more prominent than the extracted area without artificial markers, and the shape of this protrusion has a certain change . In this embodiment, the present invention proposes a multi-scale contour singular point detection method, which determines the protruding point through the multi-scale local extremum of the contour, thereby determining the possible area of artificial marking. In the step S2, multiple Scale contour singular point detection method, through the curvature extreme value of the multi-scale local contour curve of the contour, determine the singular point where the artificial marker point appears on the body surface contour, and then determine the artificially marked area, as shown in Figure 3 and Figure 4, In Figure 3, the left picture is the rendering result of the rough segmentation body surface, and the seven body surface markers on the chest are raised and visible; the right picture is the coarse segmentation axial contour line, and the body surface mark causes the contour line to be interrupted and missing; Figure 4 is the contour fine repair After Effects.
在本实施例中,所述多尺度的轮廓奇异点检测方法具体包括:In this embodiment, the multi-scale contour singular point detection method specifically includes:
分别针对轮廓边缘离散点集合{(xi,yi:i=0,…,n-1)}的x和y一维向量分别进行多尺度滤波,通过高斯滤波器进行轮廓的多尺度平滑处理,高斯函数的表达式如下:Multi-scale filtering is performed on the x and y one-dimensional vectors of the discrete point sets {(x i , y i :i=0,...,n-1)} respectively on the contour edge, and multi-scale smoothing of the contour is performed through a Gaussian filter , the expression of the Gaussian function is as follows:
其中σ是高斯函数的标准偏差,即多尺度滤波器的尺度因子,如图5所示,图中为轮廓多尺度奇异点检测结果,图中,Sigma,即σ,是高斯函数的标准偏差,即多尺度滤波器的尺度因子,图中表示出了表示在不同的尺度因子下,对应的同一个轮廓的奇异点检测结果。Where σ is the standard deviation of the Gaussian function, that is, the scale factor of the multi-scale filter, as shown in Figure 5, the figure shows the contour multi-scale singular point detection results, in the figure, Sigma, namely σ, is the standard deviation of the Gaussian function, That is, the scale factor of the multi-scale filter. The figure shows the singular point detection results corresponding to the same contour under different scale factors.
在直角坐标系中对轮廓点{(xi,yi:i=0,…,n-1)}进行参数化表达为P(u)=[x(u),y(u)],则轮廓曲线的曲率计算公式为:In the Cartesian coordinate system, the contour point {(x i ,y i :i=0,...,n-1)} is parameterized and expressed as P(u)=[x(u),y(u)], then The formula for calculating the curvature of the contour curve is:
其中x′,y′,x″和y″分别定义如下:Where x', y', x" and y" are respectively defined as follows:
式中,u为曲线参数化参变量且u∈[0,1],ui为轮廓点(xi,yi)所对应的曲线参数值,△u为参数曲线上的微偏移量,取0.01;通过确定多个尺度上的曲率极值点,检测出轮廓上稳定存在的奇异点。通过确定多个尺度上的曲率极值点,检测出轮廓上稳定存在的奇异点;图6为轴位连续切片上轮廓奇异点检测结果,,Slice表示体数据轴位层面的切片序列,比如:Slice#83,即轴位第83层切片,Slice#84,即轴位第84层切片,图中示出了在连续序列的轴位层面的切片上,所对应的轮廓奇异点检测结果。In the formula, u is the curve parameterization parameter and u∈[0,1], u i is the curve parameter value corresponding to the contour point ( xi , y i ), △u is the micro-offset on the parameter curve, Take 0.01; by determining the curvature extremum points on multiple scales, the stable singular points on the contour are detected. By determining the curvature extreme points on multiple scales, the stable singular points on the contour are detected; Figure 6 shows the detection results of the contour singular points on the axial continuous slices, and Slice represents the slice sequence at the axial level of the volume data, for example: Slice#83 is the slice at the 83rd axial layer, and Slice#84 is the slice at the 84th axial layer. The figure shows the detection results of the corresponding contour singularity points on slices in the continuous sequence of axial layers.
由于某一个人工标记在CT中的几个连续轴轮廓上都形成大小不等的凹凸,那么连续几个轴位层面位置非常相近的曲率极值点,就会对应着一个人工标记点。本发明通过对所有轴位二维轮廓上多尺度检测的轮廓奇异点,进行三维空间的聚类分析,那么同一个人工标记必定在三维空间上形成奇异点集合的小聚类。这样既可以通过聚类中心大致确定人工标记的三维空间位置,同时可以排除一些非人工标记的奇异点集合。在本实施例中,所述步骤S3具体包括:Since a certain artificial marker forms bumps and convexities of different sizes on several continuous axial contours in CT, the curvature extreme points with very similar positions in several consecutive axial layers will correspond to an artificial marker point. The present invention performs clustering analysis in three-dimensional space on the contour singular points of multi-scale detection on all axial two-dimensional contours, and then the same artificial mark must form a small cluster of singular point sets in three-dimensional space. In this way, the three-dimensional space position of the artificial marker can be roughly determined through the cluster center, and some non-artificially marked singular point sets can be excluded at the same time. In this embodiment, the step S3 specifically includes:
S31、对所有轴位二维轮廓上轮廓奇异点,进行三维空间的聚类分析,在三维空间上形成个候补奇异点集合的聚类;S31. Perform cluster analysis in three-dimensional space on the contour singular points on all axial two-dimensional contours, and form a cluster of candidate singular point sets in three-dimensional space;
S32、通过聚类法对奇异点集合进行聚类分析,从而确定聚类的中心位置,如图7所示,图中为(4)奇异点三维空间聚类。S32. Carry out cluster analysis on the set of singular points by clustering method, so as to determine the central position of the cluster, as shown in FIG. 7 , which is (4) three-dimensional clustering of singular points in the figure.
作为优选的,所述步骤S32中采用k-mean聚类法对奇异点集合进行聚类分析,具体包括:Preferably, in the step S32, the k-mean clustering method is used to perform cluster analysis on the singular point set, which specifically includes:
S321、从N个候补奇异点集合中随机选取K个作为初始聚类中心;S321. Randomly select K from the N candidate singular point sets as the initial clustering center;
S322、对剩余的每个奇异点,测量其到每个聚类中心的距离,并把它归到最近的聚类中心;S322. For each remaining singular point, measure its distance to each cluster center, and classify it to the nearest cluster center;
S323、重新计算已经得到的各个类的聚类中心c[i]={所有标记为i的data[j]之和}/标记为i的个数;S323. Recalculate the obtained cluster centers of each class c[i]={sum of all data[j] marked as i}/number of marked i;
S324、迭代S32、S23直至新的聚类中心与原聚类中心相等或小于指定阈值,算法结束,得到人工标记候补点的三维空间位置。S324, iterate S32, S23 until the new cluster center is equal to the original cluster center or less than the specified threshold, the algorithm ends, and the three-dimensional space position of the manually marked candidate point is obtained.
由于标记点和体表的三维局部凹凸性在三维空间很难稳定和精准检测、且存在运算复杂度过高的不足,本发明提出了通过分析三维体表曲面的轴位二维轮廓存在曲率极值的凹凸特性,从而确定人工标记在二维轮廓上的位置。由于某一个人工标记在CT中的几个连续轴位轮廓上都形成凹凸,那么连续几个轴位层面位置非常相近的曲率极值点,就可以确定人工标记在三维空间的位置,并且可以排除其它非人工标记的影响。因此,噪声形成的某一层凹凸特征误算很难影响到真实的人工标记的提取,因为噪声很难在位置非常相近的几个连续轴轮廓上都形成凹凸。Since the three-dimensional local concave-convexity of the marker points and the body surface is difficult to detect stably and accurately in three-dimensional space, and there is a shortage of high computational complexity, the present invention proposes to analyze the existence of extreme curvature in the axial two-dimensional contour of the three-dimensional body surface surface. The bump property of the value, thereby determining the position of the artificial marker on the 2D contour. Since a certain artificial marker forms bumps on several consecutive axial contours in CT, the position of the artificial marker in three-dimensional space can be determined by the curvature extreme points with very similar positions in several consecutive axial slices, and can be ruled out. Effects of other non-artificial markers. Therefore, the miscalculation of a certain layer of concave-convex features formed by noise is difficult to affect the extraction of real artificial marks, because it is difficult for noise to form concave-convex on the contours of several consecutive axes that are very close in position.
通过体表精确提取和二维轮廓奇异点的检测并结合三维空间的聚类分析,已经可以确定了人工标记点的候选点。但是,由体表轮廓和聚类中心所确定的人工标记三维坐标位置并不精确,并不是准确的人工标记的中心。本发明提出了基于CT影像的骨骼分割影像进一步获得人工标记的三维分割结果,结合三维空间奇异点聚类得到的人工标记候选点,从而精确提取人工标记的分割区域并将其重心作为人工标记点的三维空间位置。由于人工标记与骨骼在CT影像中均具有较高的信号强度值,那么通过多层次的阈值分割多目标不连续区域,就可以将骨骼和人工标记统一的分割出来。此时,在骨骼分割的三维体数据中检索奇异点聚类形成人工标记候选点坐标,那么人工标记点区域就可以确定,因此,在本实施例中,通过多层次的阈值分割多目标不连续区域,将骨骼和人工标记点统一的分割出来,在骨骼分割的三维体数据中检索奇异点聚类形成人工标记候选点坐标,确定人工标记点区域,如图8所示,图中为骨骼分割含人工标记影像和人工标记点提取结果。Through accurate extraction of body surface and detection of singular points in 2D contour combined with cluster analysis in 3D space, candidate points of artificial marker points can be determined. However, the three-dimensional coordinate position of the artificial marker determined by the body surface contour and the cluster center is not accurate, and is not the accurate center of the artificial marker. The present invention proposes a bone segmentation image based on CT images to further obtain artificially marked three-dimensional segmentation results, combined with artificially marked candidate points obtained by clustering of singular points in three-dimensional space, thereby accurately extracting artificially marked segmented regions and using their centers of gravity as artificially marked points three-dimensional space position. Since both artificial markers and bones have high signal intensity values in CT images, the bones and artificial markers can be uniformly segmented by segmenting multi-target discontinuous regions through multi-level thresholding. At this time, in the three-dimensional volume data of bone segmentation, the singular point clusters are searched to form the coordinates of artificially marked candidate points, and then the area of artificially marked points can be determined. area, the bones and artificial marker points are uniformly segmented, and the singular point clusters are retrieved in the 3D volume data of the bone segmentation to form the coordinates of the artificial marker candidate points, and the artificial marker point area is determined, as shown in Figure 8, which is the bone segmentation Contains artificially marked images and artificially marked point extraction results.
以上所述实施例仅表达了本发明的几种实施方式,其描述较为具体和详细,但并不能因此而理解为对本发明专利范围的限制。应当指出的是,对于本领域的普通技术人员来说,在不脱离本发明构思的前提下,还可以做出若干变形和改进,这些都属于本发明的保护范围。因此,本发明专利的保护范围应以所附权利要求为准。The above-mentioned embodiments only express several implementation modes of the present invention, and the descriptions thereof are relatively specific and detailed, but should not be construed as limiting the patent scope of the present invention. It should be pointed out that those skilled in the art can make several modifications and improvements without departing from the concept of the present invention, and these all belong to the protection scope of the present invention. Therefore, the protection scope of the patent for the present invention should be based on the appended claims.
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