NZ761848B2 - Bispecific t-cell engager with antigen binding domains to the t cell receptor beta constant domain - Google Patents
Bispecific t-cell engager with antigen binding domains to the t cell receptor beta constant domainInfo
- Publication number
- NZ761848B2 NZ761848B2 NZ761848A NZ76184815A NZ761848B2 NZ 761848 B2 NZ761848 B2 NZ 761848B2 NZ 761848 A NZ761848 A NZ 761848A NZ 76184815 A NZ76184815 A NZ 76184815A NZ 761848 B2 NZ761848 B2 NZ 761848B2
- Authority
- NZ
- New Zealand
- Prior art keywords
- cell
- cells
- trbc1
- trbc2
- bispecific
- Prior art date
Links
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Abstract
The present invention relates to a bispecific T-cell engager (BiTE) which comprises an antigen binding domain which selectively binds TCR beta constant region 1 (TRBC1) or TRBC2, and the use of such for the treatment of a T-cell lymphoma or leukaemia in a subject.
Description
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BISPECIFIC T-CELL ENGAGER WITH ANTIGEN BINDING DOMAINS TO THE T
CELL RECEPTOR BETA CONSTANT DOMAIN
FIELD OF THE INVENTION
The present invention relates to cells and agents useful in the treatment of T-cell
lymphoma or leukaemia.
BACKGROUND TO THE INVENTION
Lymphoid malignancies can largely be divided into those which are derived from either
T-cells or B-cells. T-cell malignancies are a clinically and biologically heterogeneous
group of disorders, together comprising 10-20% of non-Hodgkin’s lymphomas and 20%
of acute leukaemias. The most commonly identified histological subtypes are
peripheral T-cell lymphoma, not otherwise specified (PTCL-NOS); angio-
immunoblastic T-cell lymphoma (AITL) and anaplastic large cell lymphoma (ALCL). Of
all acute Lymphoblastic Leukaemias (ALL), some 20% are of a T-cell phenotype.
These conditions typically behave aggressively, compared for instance with B-cell
malignancies, with estimated 5-year survival of only 30%. In the case of T-cell
lymphoma, they are associated with a high proportion of patients presenting with
disseminated disease, unfavourable International Prognostic Indicator (IPI) score and
prevalence of extra-nodal disease. Chemotherapy alone is not usually effective and
less than 30% of patients are cured with current treatments.
Further, unlike in B-cell malignancies, where immunotherapies such as the anti-CD20
monoclonal antibody rituximab have dramatically improved outcomes, there is currently
no equivalently effective, minimally toxic immunotherapeutic available for the treatment
of T-cell malignancies. An important difficulty in the development of immunotherapy
for T-cell disorders is the considerable overlap in marker expression of clonal and
normal T-cells, with no single antigen clearly able to identify clonal (malignant) cells.
The same problem exists when targeting a pan-B-cell antigen to treat a B-cell
malignancy. However, in this case, the concomitant depletion of the B-cell compartment
results in relatively minor immunosuppression which is readily tolerated by most
patients. Further, in therapies which result in particularly long-term depletion of the
normal B-compartment, its loss can be largely abrogated by administration of pooled
immunoglobulin. The situation is completely different when targeting T-cell
malignancies. Here, concomitant depletion of the T-cell compartment leads to severe
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immunosuppression and severe toxicity. Further, there is no satisfactory way to
mitigate loss of the T-cell compartment.
The toxicity is in part illustrated by the clinical effects of the therapeutic monoclonal
antibody Alemtuzumab. This agent lyses cells which express CD52 and has some
efficacy in T-cell malignancies. The utility of this agent is greatly limited by a profound
cellular immunodeficiency, largely due to T-cell depletion, with markedly elevated risk
of infection.
There is thus a need for a new method for targeted treatment of T-cell malignancies
which is not associated with the above disadvantages.
DESCRIPTION OF THE FIGURES
Figure 1: A diagram of the αβ T-cell Receptor/CD3 Complex. The T-cell receptor is
formed from 6 different protein chains which must assemble in the endoplasmic
reticulum to be expressed on the cell surface. The four proteins of the CD3 complex
(CD3 , CD3 , CD3 and CD3 ) sheath the T-cell Receptor (TCR). This TCR imbues
the complex with specificity of a particular antigen and is composed of two chains:
TCR and TCR . Each TCR chain has a variable component distal to the membrane
and a constant component proximal to the membrane. Nearly all T-cell lymphomas and
many T-cell leukaemias express the TCR/CD3 complex.
Figure 2: The segregation of T-cell Receptor β-constant region (TRBC)-1 and
TRBC2 during T-cell receptor rearrangement. Each TCR beta chain is formed from
genomic recombination of a particular beta variable (V), diversity (D), joining (J) and
constant (TRBC) regions. The human genome contains two very similar and
functionally equivalent TRBC loci known as TRBC1 and TRBC2. During TCR gene re-
arrangement, a J-region recombines with either TRBC1 or TRBC2. This rearrangement
is permanent. T-cells express many copies of a single TCR on their surface, hence
each T-cell will express a TCR whose -chain constant region is coded for by either
TRBC1 or TRBC2.
Figure 3: Alignment of human TRBC1 and TRBC2 at the amino acid level. The
TCR constant chain coded for by TRBC1 and TRBC2 differ by only 4 amino acid
differences: K / N at position 3 of the TRBC; N / K at position 4 of the TRBC; F / Y at
position 36 of the TRBC; V / E at position 135 of the TRBC;
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Figure 4: Definitive demonstration that the JOVI-1 antibody binds to TRBC1 but
not TRBC2. Genetic engineering of cells was used to definitively demonstrate that the
JOVI-1 monoclonal antibody recognizes TRBC1 variant of the TCR constant chain. A
tri-cistronic retroviral cassette was generated. This coded for both the TCRα and TCR
chains of a human TCR which recognizes the minor histocompatibility antigen HA1,
along with truncated human CD34 as a convenient marker gene. The HA1 TCR is
natively TRBC2. A second retroviral cassette was generated which was identical to the
first except the 4 residues in the TCR constant region which differentiate TRBC1 from
TRBC2 were changed to those coded by TRBC1. Jurkat T-cells which have both their
TCRα and TCR chains knocked-out were transduced with either vector. These cells
were stained with either a pan-TCR/CD3 antibody or the monoclonal JOVI-1
conjugated along with antibodies against CD34 and analysed in a flow cytometer. The
upper row demonstrates staining with a pan-TCR/CD3 antibody v CD34 (marker of
transduction), the lower row demonstrates staining with JOVI-1 vs CD34. Transduced
cells demonstrate similar TCR/CD3 staining but only TRBC1 +ve cells stain with JOVI-
1. Hence, JOVI-1 is specific to TRBC1 and further it is possible to use an antibody to
distinguish TRBC1 and 2 TCRs.
FIGURE 5: The JOVI-1 mAb differentiates TRBC1 from TRBC2 by recognizing
residues 3 and 4 of the TRBC. To precisely determine how JOVI-1 discriminates
TRBC1 from TRBC2, the HA1 TCR TRBC2 construct detailed above was mutated to
make two TRBC1/2 hybrids. An additional variant was generated so that only residues
3 and 4 of the TCR constant chain were changed from those of TRBC2 to those found
in TRBC1. A further variant was made where only residue 36 was changed from that
found in TRBC2 to TRBC1. TCR knock-out Jurkat T-cells were transduced with these
new constructs. The original TRBC2 and TRBC1 transduced Jurkats described in
Figure 4 were used as controls. The Jurkat T-cells were stained with JOVI-1 and
analysed with a flow cytometer. Staining of JOVI-1 is overlaid over that of non-
transduced TCR knock-out Jurkat T-cells. JOVI-1 stained Jurkats expressing the
TRBC1 TCR but not the TRBC2 TCR. JOVI-1 stained TRBC1/2 hybrid where only
TRBC residues 3 and 4 were those of TRBC1. JOVI-1 did not stain Jurkat T-cells where
only TRBC residue 36 was that of TRBC1.
FIGURE 6: Example of normal donor T-cell expression of TRBC1. Normal donor
peripheral blood mononuclear cells were stained with antibodies against CD3, CD4,
CD8 and JOVI-1 and analysed by flow cytometry. CD4+ and CD8+ T-cell populations
are shown on the upper panel. Each of this population is gated and forward scatter vs
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JOVI-1 staining are shown on the Y and X-axes respectively. These data show that
both CD4+ and CD8+ compartments contain cells which are TRBC1 +ve and –ve. This
is representative data from one donor.
FIGURE 7: TRBC1+ T-cells in several normal donors. Ten normal donors were bled
and peripheral blood mononuclear cells were stained as described in figure 4 above.
The aggregate data of the proportion of TRBC1 T-cells in both CD4 and CD8
compartments is shown in a bar graph along with median and range. All donors had
TRBC1+ and TRBC1- compartments. Median % of TRBC1+ cells = 36%.
FIGURE 8: T-cell malignancy derived cell lines stained with JOVI-1. Several cell
lines have been derived from T-cell malignancies. Many of these cell lines still express
the TCR. We selected Jurkats (A T-cell leukaemia cell line), HPB-ALL (another T-cell
leukaemia cell line) and HD-Mar-2 (a T-cell lymphoma cell line) for study. By staining
these cell lines with a pan-TCR/CD3 antibody, we were able to demonstrate that all
three express TCR (left panels, staining overlaid over isotype control staining). Next,
by staining with JOVI-1 we were able to determine that these T-cell lines are either
TRBC1 negative or positive. Only Jurkats cells (TRBC1+) and not HPB-ALL or HD-
Mar-2 (TRBC2+) cells stain with JOVI-1, supporting exclusive expression of either
TRBC1 or 2.
FIGURE 9: Selective Killing of TRBC1 T-cells with JOVI-1 mAb. Wild-type Jurkat
T-cells (CD34-, TRBC1+) were mixed with TCRαβ knock-out Jurkat T-cells transduced
with TRBC2 co-expressed with the CD34 marker gene (CD34+TRBC2+). These cells
were incubated with JOVI-1 alone or incubated with JOVI-1 and complement for 1 hour.
Cells were washed and stained for CD34, Annexin V and 7-AAD. Cells were analysed
by flow-cytometry. Shown below is CD34 expression in the live population as defined
by Annexin-V negative and 71AAD dim population. (a) JOVI-1 alone; (b) JOVI-1 with
complement. Selective killing of TRBC1 T-cells (CD34-) is observed.
FIGURE 10: Polyclonal Epstein Barr Virus (EBV) specific T-cells can be split into
two approximately equal TRBC1/2 populations. Using well established methods, the
inventors selectively expanded EBV specific T-cells from the peripheral blood of a
normal donor. The subsequent line had a high degree of selectively against autologous
EBV infected B-cells (auto LCLs), and no activity against allogeneic EBV infected T-
cells (allo LCLs), and no non-specific NK activity (as measured by testing against K562
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cells). Such a line is representative of the donor’s EBV immunity. (b) When stained with
JOVI-1, these T-cells typed approximately equally for TRBC1 and TRBC2.
FIGURE 11: Annotated sequence of JOVI-1 VH and VL. The hypervariable regions
are underlined and in bold.
FIGURE 12: Demonstration that a peripheral T-cell lymphoma is TRBC restricted,
but normal circulating T-cells are not. Peripheral blood T-cells from a patient with
circulating T-cell lymphoma cells were drawn. Peripheral mononuclear cells were
isolated and stained with a panel of antibodies including CD5, TCR and JOVI-1. Normal
and malignant T-cells could be differentiated on flow by CD5 expression intensity. CD5
bright (normal T-cells) had approximately equal TRBC1 and 2 populations. The CD5
intermediate and dim populations (the tumour) were all TRBC2 positive. If this patient
had a TRBC2 directed therapy, the lymphoma would be eradicated and approximately
half of their T-cells would be spared.
FIGURE 13: Demonstration that the VH and VL derived from JOVI-1 were correct
and that they can fold as a single-chain variable fragment. Original hybridoma
supernatant, recombinant JOVI-1 antibody and scFv-Fc generated from transfected
293T cells were used to stain a number of cell lines: Jurkat TCR knock-outs, wild-type
Jurkats, Jurkat TCR knock-out transduced with a TRBC1 TCR in a vector co-
expressing eBFP2; Jurkat TCR knock-out transduced with a TRBD2 TCR in a vector
co-expressing eBFP2. Staining was analysed by flow cytometry. Both the recombinant
antibody and the scFv bound cells expressing TRBC2.
FIGURE 14: JOVI-1 based CARs in different formats. CARs typically comprise of a
binding domain, a spacer, a transmembrane domain and an intracellular signalling
domain. In this study CARs were generated which comprise of the JOVI-1 scFv; a
spacer derived from either the CD8 stalk, the hinge-CH2-CH3 domain of human IgG1
with mutations which remove FcR binding; or a spacer derived from human IgG1.
FIGURE 15: Function of JOVI-1 based CAR. Normal donor peripheral blood T-cells
were transduced with the different CARs described above. T-cells were also
transduced with a CD19-specific CAR as a control. These T-cells were then challenged
with target cells: Jurkats – TCR knock-out and Jurkats wild-type and Raji cells (a CD19+
B-cell lymphoma line). Chromium release data is shown of the effectors against
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different targets. JOVI-1 CAR T-cells kill Jurkats but not Raji cells or Jurkats with TCR
knocked out.
FIGURE 16: Self-Purging of JOVI-1 CAR T-cell cultures. Since T-cells comprise of
approximately equal numbers of T-cells which are either TRBC1 or TRBC2 positive, it
is possible that after introduction of CARs a certain amount of “fratricide” or self-purging
of the culture may occur. It was demonstrated that this was the case. In this example,
CAR T-cells were stained after transduction and analysed by flow-cytometry.
Comparing mock-transduced versus transduced, one can observe that the T-cell
population loses TRBC1 positive T-cells.
Figure 17: Investigating the clonality of T-cell large granular Leukaemia (T-LGL)
– Patient A
Figure 18: Investigating the clonality of T-cell large granular Leukaemia (T-LGL)
– Patient B
Figure 19: Investigating the clonality of T-cell large granular Leukaemia (T-LGL)
– Patient C
Figure 20: Investigating the clonality of polyclonal T-cell lymphoma (PCTL) –
Patient D
Figure 21:TRBC peptide phage selection strategies. A) Two rounds of solid-phase
phage display selections on TRBC peptides directly or indirectly immobilised on a
surface. B) Three rounds of solution-phase phage display selections on biotinylated
TRBC peptides.
Figure 22: Analysis of polyclonal phage outputs from TRBC peptide phage
display selections. TRF binding assay using polyclonal phage from solid phase
selections carried out on TRBC peptides directly immobilised as BSA/OA conjugates
(A), solid phase selections on TRBC peptides immobilised on streptavidin/neutravidin
(B) and from solution phase selections (C).
Figure 23: Schematic representation of pSANG10-3F vector. Gene encoding single
chain antibody (scFv) is cloned at NcoI/NotI site downstream of T7 promoter and pelB
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leader (for periplasmic translocation). The vector also contains a C-terminal hexa-
histidine tag (His6) for purification and tri-FLAG tag detection.
Figure 24: Primary screening for TRBC1 and TRBC2 specific binders. Binding of
94 scFvs from TRBC1 (A) and TRBC2 (B) selections to biotinylated TRBC1 and TRBC2
(0.5 μg/ml) immobilised on neutravidin (10 μg/ml) coated Nunc Maxisorp™ 96 well
plates. The scFv binding to the immobilised peptides was detected using an anti-FLAG
antibody conjugated to europium.
Figure 25: Binding of polyclonal antibody sera from rabbit #13174 immunized
with TRBC1 against TRBC1 and TRBC2 peptides. (A) After 3rd immunization (B)
After 3rd immunization and purification of TRBC1 specific antibodies.
Figure 26: Binding of polyclonal antibody sera from rabbit #17363 immunized
with TRBC2 peptide against TRBC1 and TRBC2 peptides. (A) After 3rd
immunization (B) After 3rd immunization and purification of TRBC2 specific antibodies.
Figure 27: Binding of polyclonal antibody sera from rabbit #17364 immunized
with TRBC2 peptide against TRBC1 and TRBC2 peptides. (A) After 3rd
immunization (B) After 3rd immunization and purification of TRBC2 specific antibodies.
SUMMARY OF ASPECTS OF THE INVENTION
The present inventors have devised a method whereby it is possible to deplete
malignant T-cells in a subject, without affecting a significant proportion of healthy T
cells. In particular, they have developed TRBC1 and TRBC2-specific chimeric antigen
receptors (CARs) for use in the treatment of T-cell malignancies.
Thus in a first aspect the present invention provides a chimeric antigen receptor (CAR)
which comprises an antigen-binding domain which selectively binds TCR beta constant
region 1 (TRBC1) or TRBC2.
In a first embodiment of the first aspect of the invention there is provided a CAR which
selectively binds TRBC1. In this embodiment, the CAR may comprise an antigen-
binding domain which has a variable heavy chain (VH) and a variable light chain (VL)
which comprise the following complementarity determining regions (CDRs):
VH CDR1: SEQ ID No. 7;
VH CDR2: SEQ ID No. 8;
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VH CDR3: SEQ ID No. 9;
VL CDR1: SEQ ID No. 10;
VL CDR2: SEQ ID No. 11; and
VL CDR3: SEQ ID No. 12.
The CAR may comprise an antigen-binding domain which comprises a variable heavy
chain (VH) having the sequence shown as SEQ ID No. 1 and a variable light chain (VL)
having the sequence shown as SEQ ID No. 2.
The CAR may comprise an antigen-binding domain which comprises an scFv having
the amino acid sequence shown as SEQ ID No. 3.
The CAR may comprise an amino acid sequence selected from SEQ ID No. 33, 34 and
The CAR may comprise a VH CDR3 and/or a VL CDR3 from those listed in Table 1.
The CAR may comprise an antibody or functional fragment thereof which comprises:
(i) the heavy chain CDR3 and/or the light chain CDR3;
(ii) heavy chain CDR1, CDR2 and CDR3 and/or light chain CDR1, CDR2 and
CDR3; or
(iii) the variable heavy chain (VH) and/or the variable light chain (VL);
from one of the scFvs shown as SEQ ID No. 13 to 22.
In a second embodiment of the first aspect of the invention there is provided a CAR
which selectively binds TRBC2.
In connection with this embodiment, the CAR may comprise a VH CDR3 and/or a VL
CDR3 from those listed in Table 2.
The CAR may comprise an antibody or functional fragment thereof which comprises:
(i) the heavy chain CDR3 and/or the light chain CDR3;
(ii) heavy chain CDR1, CDR2 and CDR3 and/or light chain CDR1, CDR2 and
CDR3; or
(iii) the variable heavy chain (VH) and/or the variable light chain (VL);
from one of the scFvs shown as SEQ ID No. 23 to 32.
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In a second aspect, the present invention provides a nucleic acid sequence encoding
a CAR according to the first aspect of the invention.
In a third aspect, there is provided a vector which comprises a nucleic acid sequence
according to the second aspect of the invention.
In a fourth aspect, there is provided a cell which comprises a CAR according to the first
aspect of the invention. The cell may be a cytolytic immune cell, such as a T-cell or
natural killer (NK) cell.
In a fifth aspect there is provided a method for making a cell according to the fourth
aspect of the invention which comprises the step of transducing or transfecting a cell
with a nucleic acid sequence according to the second aspect of the invention or a vector
according to the third aspect of the invention.
In a sixth aspect there is provided a cell according to the fourth aspect of the invention
for use in a method for treating a T-cell lymphoma or leukaemia in a subject which
comprises the step of
administrating the cell comprising the TCRB1 or TCRB2 selective CAR to the
subject, to cause selective depletion of the malignant T-cells, together with normal T-
cells expressing the same TRBC as the malignant T-cells, but not to cause depletion
of normal T-cells expressing the TRBC not expressed by the malignant T-cells.
The method may also comprise the step of investigating the TCR beta constant region
(TCRB) of a malignant T cell from the subject to determine whether it expresses TRBC1
or TRBC2.
There is also provided a method for treating a T-cell lymphoma or leukaemia in a
subject which comprises the step of administering a TCRB1 or TCRB2 selective agent
to the subject, wherein the agent causes selective depletion of the malignant T-cells,
together with normal T-cells expressing the same TRBC as the malignant T-cells, but
does not cause depletion of normal T-cells expressing the TRBC not expressed by the
malignant T-cells.
In a first embodiment of this aspect of the invention, the agent is a TCRB1 selective
agent. In a second embodiment of this aspect of the invention, the agent is a TRBC2
selective agent.
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The method may also comprise the step of investigating the TCR beta constant region
(TRBC) of a malignant T-cell to determine whether it expresses TRBC1 or TRBC2,
prior to the administration step.
The agent may be a depleting monoclonal antibody or a fragment thereof. The agent
may be a conjugated antibody, which may comprise a chemotherapeutic entity.
The agent may be a bispecific T-cell engager. The agent may be a chimeric antigen
receptor (CAR) expressing T-cell. The CAR may comprise an amino acid sequence
selected from the group consisting of SEQ ID No. 33, 34 and 35.
The agent may comprise the JOVI-1 antibody or a functional fragment thereof.
The agent may comprise an antibody or a functional fragment thereof having a variable
heavy chain (VH) and a variable light chain (VL) which comprise the following
complementarity determining regions (CDRs):
VH CDR1: SEQ ID No. 7;
VH CDR2: SEQ ID No. 8;
VH CDR3: SEQ ID No. 9;
VL CDR1: SEQ ID No. 10;
VL CDR2: SEQ ID No. 11; and
VL CDR3: SEQ ID No. 12.
The agent may comprise an antibody of functional fragment thereof which comprises a
variable heavy chain (VH) having the amino acid sequence shown as SEQ ID No. 1
and a variable light chain (VL) having the amino acid sequence shown as SEQ ID No.
The agent may comprise an ScFv having the amino acid sequence shown as SEQ ID
No. 3.The agent may be provided as a pharmaceutical composition.
The T-cell lymphoma or leukaemia may be selected from peripheral T-cell lymphoma,
not otherwise specified (PTCL-NOS); angio-immunoblastic T-cell lymphoma (AITL),
anaplastic large cell lymphoma (ALCL), enteropathy-associated T-cell lymphoma
(EATL), hepatosplenic T-cell lymphoma (HSTL), extranodal NK/T-cell lymphoma nasal
type, cutaneous T-cell lymphoma,primary cutaneous ALCL, T cell prolymphocytic
P104381PCT
leukaemia and T-cell acute lymphoblastic leukaemia.
The present invention also provides an agent for use in treating a T-cell lymphoma or
leukaemia according to such a method.
The present invention also provides a kit comprising an agent for use as defined above.
The present invention also provides the use of an agent in the manufacture of a
medicament for treatment of a T-cell lymphoma or leukaemia according to the above
method.
The present invention also provides a method for diagnosing a T-cell lymphoma or
leukaemia in a subject which comprises the step of determining the percentage of total
T-cells in a sample which are TRBC1 or TRBC2 positive.
A percentage of TRBC1 or TRBC2 positive T-cells which is greater than about 80%
may indicate the presence of a T-cell lymphoma or leukaemia.
The sample may be a peripheral blood sample or a biopsy.
The agent which binds total T-cells may bind CD3.
DETAILED DESCRIPTION
The present invention provides agents, such as chimeric antigen receptors (CARs)
which selectively bind TRBC1 or TRBC2. Such agents are useful in methods for
treating a T-cell lymphoma or leukaemia in a subject. T cell malignancies are clonal,
so they either express TRBC1 or TRBC2. By administering a TCRB1 or TCRB2
selective agent to the subject, the agent causes selective depletion of the malignant T-
cells, together with normal T-cells expressing the same TRBC as the malignant T-cells,
but does not cause depletion of normal T-cells expressing the TRBC not expressed by
the malignant T-cells.
TCR β CONSTANT REGION (TRBC)
The T-cell receptor (TCR) is expressed on the surface of T lymphocytes and is
responsible for recognizing antigens bound to major histocompatibility complex (MHC)
molecules. When the TCR engages with antigenic peptide and MHC (peptide/MHC),
the T lymphocyte is activated through a series of biochemical events mediated by
P104381PCT
associated enzymes, co-receptors, specialized adaptor molecules, and activated or
released transcription factors.
The TCR is a disulfide-linked membrane-anchored heterodimer normally consisting of
the highly variable alpha (α) and beta (β) chains expressed as part of a complex with
the invariant CD3 chain molecules. T-cells expressing this receptor are referred to as
α:β (or αβ) T-cells (~95% total T-cells). A minority of T-cells express an alternate
receptor, formed by variable gamma (γ) and delta (δ) chains, and are referred to as γδ
T-cells (~5% total T cells).
Each α and β chain is composed of two extracellular domains: Variable (V) region and
a Constant (C) region, both of Immunoglobulin superfamily (IgSF) domain forming
antiparallel β-sheets. The constant region is proximal to the cell membrane, followed
by a transmembrane region and a short cytoplasmic tail, while the variable region binds
to the peptide/MHC complex (see Figure 1). The constant region of the TCR consists
of short connecting sequences in which a cysteine residue forms disulfide bonds, which
forms a link between the two chains.
The variable domains of both the TCR α-chain and β-chain have three hypervariable
or complementarity determining regions (CDRs). The variable region of the β-chain
also has an additional area of hypervariability (HV4), however, this does not normally
contact antigen and is therefore not considered a CDR.
The TCR also comprises up to five invariant chains γ,δ,ε (collectively termed CD3) and
ζ. The CD3 and ζ subunits mediate TCR signalling through specific cytoplasmic
domains which interact with second-messenger and adapter molecules following the
recognition of the antigen by αβ or γδ. Cell-surface expression of the TCR complex is
preceded by the pair-wise assembly of subunits in which both the transmembrane and
extracellular domains of TCR α and β and CD3 γ and δ play a role
TCRs are therefore commonly composed of the CD3 complex and the TCR α and β
chains, which are in turn composed of variable and constant regions (Figure 1).
The locus (Chr7:q34) which supplies the TCR β-constant region (TRBC) has duplicated
in evolutionary history to produce two almost identical and functionally equivalent
genes: TRBC1 and TRBC2 (Figure 2), which differ by only 4 amino acid in the mature
protein produced by each (Figure 3). Each TCR will comprise, in a mutually exclusive
P104381PCT
fashion, either TRBC1 or TRBC2 and as such, each αβ T-cell will express either TRBC1
or TRBC2, in a mutually exclusive manner.
The present inventors have determined that, despite the similarity between the
sequence of the TRBC1 and TRBC2, it is possible to discriminate between them. The
inventors have also determined that amino acid sequences of TRBC1 and TRBC2 can
be discriminated whilst in situ on the surface of a cell, for example a T-cell.
MALIGNANT CELLS
The term ‘malignant’ is used herein according to its standard meaning to refer to a cell
which is not self-limited in its growth, may be capable of invading into adjacent tissues
and may be capable of spreading to distant tissue. As such the term ‘malignant T cell’
is used herein to refer to a clonally expanded T cell in the context of a lymphoma or
leukaemia.
The method of the present invention involves determining the TRBC of a malignant T-
cell. This may be performed using methods known in the art. For example it may be
determined by PCR, western blot, flow cytometry or fluorescent microscopy methods.
Once the TRBC expressed by a malignant T-cell has been determined, the appropriate
TRBC1 or TRBC2 selective agent is administered to the subject. The ‘appropriate
TRBC selective agent’ means that where the malignant T-cell is determined to express
TRBC1, a TRBC1 selective agent is administered, whereas where the malignant T-cell
is determined to express TRBC2, a TRBC2 selective agent is administered.
SELECTIVE AGENT
The selective agent binds to either TRBC1 or TRBC2 in a mutually exclusive manner.
As stated above, each αβ T-cell expresses a TCR which comprises either TRBC1 or
TRBC2. In a clonal T-cell disorder, such as a T-cell lymphoma or leukaemia, malignant
T-cells derived from the same clone will all express either TRBC1 or TRBC2.
Thus the present method comprises the step of administering a TRBC1 or TRBC2
selective agent to the subject, wherein the agent causes selective depletion of the
malignant T-cells, together with normal T-cells which express the same TRBC as the
malignant T-cells, but does not cause significant depletion of normal T-cells expressing
the other TRBC from the malignant T-cells.
P104381PCT
Because the TRBC selective agent does not cause significant depletion of normal T-
cells expressing the other TRBC from the malignant T-cells it does not cause depletion
of the entire T-cell compartment. Retention of a proportion of the subject’s T-cell
compartment (i.e. T-cells which do not express the same TRBC as the malignant T-
cell) results in reduced toxicity and reduced cellular and humoral immunodeficiency,
thereby reducing the risk of infection.
Administration of a TRBC1 selective agent according to the method of the present
invention may result in a 5, 10, 20, 50, 75, 90, 95 or 99% depletion, i.e. reduction in the
number of T-cells expressing TRBC1.
Administration of a TRBC2 selective agent according to the method of the present
invention may result in a 5, 10, 20, 50, 75, 90, 95 or 99% depletion, i.e.reduction in the
number of T-cells expressing TRBC2.
A TRBC1 selective agent may bind TRBC1 with an at least 2-fold, 4-fold, 5-fold, 7-fold
or 10-fold greater affinity that TRBC2. Likewise, a TRBC2 selective agent may bind
TRBC2 with an at least 2-fold, 4-fold, 5-fold, 7-fold or 10-fold greater affinity that
TRBC1.
A TRBC1 selective agent causes depletion of a greater proportion of TRBC1-
expressing T-cells in cell population than TRBC2-expressing cell. For example, the
ratio of depletion of TRBC1-expressing T-cells to TRBC2-expressing cells may be at
least 60%:40%, 70%:30%, 80%:20%, 90%:10% or 95%:5%. Likewise, a TRBC2
selective agent causes depletion of a greater proportion of TRBC1-expressing T-cells
in cell population than TRBC2-expressing cell. For example, the ratio of depletion of
TRBC2-expressing T-cells to TRBC1-expressing cells may be at least 60%:40%,
70%:30%, 80%:20%, 90%:10% or 95%:5%.
Using the method of the invention, malignant T-cells are deleted in a subject, without
affecting a significant proportion of healthy T cells. By “a significant proportion” it is
meant that a sufficient proportion of T cells expressing the TRBC different from the
maltgnant T cells survive in order to maintain T-cell function in the subject. The agent
may cause depletion of less than 20%, 15%, 10% or 5% of the T-cell population
expressing the other TCRB.
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The selective agent may be selective for either TRBC1 or TRBC2 because it
discriminates residues as listed below:
(i) N from K at position 3 of the TRBC;
(ii) K from N at position 3 of the TRBC;
(iii) K from N at position 4 of the TRBC;
(iv) N from K at position 4 of the TRBC;
(v) F from Y at position 36 of the TRBC;
(vi) Y from F at position 36 of the TRBC;
(vii) V from E at position 135 of the TRBC; and/or
(viii) E from V at position 135 of the TRBC.
The selective agent may discriminate any combination of the differences above
differences.
ANTIBODY
The agent used in the method of the present invention may be a depleting monoclonal
antibody (mAb) or a functional fragment thereof, or an antibody mimetic.
The term ‘depleting antibody’ is used in the conventional sense to relate to an antibody
which binds to an antigen present on a target T-cell and mediates death of the target
T-cell. The administration of a depleting antibody to a subject therefore results in a
reduction/decrease in the number of cells within the subject which express the target
antigen.
As used herein, “antibody” means a polypeptide having an antigen binding site which
comprises at least one complementarity determining region CDR. The antibody may
comprise 3 CDRs and have an antigen binding site which is equivalent to that of a
domain antibody (dAb). The antibody may comprise 6 CDRs and have an antigen
binding site which is equivalent to that of a classical antibody molecule. The remainder
of the polypeptide may be any sequence which provides a suitable scaffold for the
antigen binding site and displays it in an appropriate manner for it to bind the antigen.
The antibody may be a whole immunoglobulin molecule or a part thereof such as a
Fab, F(ab)’2, Fv, single chain Fv (ScFv) fragment or Nanobody. The antibody may be
a bifunctional antibody. The antibody may be non-human, chimeric, humanised or fully
human.
P104381PCT
The antibody may therefore be any functional fragment which retains the antigen
specificity of the full antibody.
TRBC1-SELECTIVE ANTIBODIES
The agent for use in the method of the present invention may comprise an antibody or
a functional fragment thereof having a variable heavy chain (VH) and a variable light
chain (VL) which comprises one or more of the following complementarity determining
regions (CDRs):
VH CDR1: GYTFTGY (SEQ ID No. 7);
VH CDR2: NPYNDD (SEQ ID No. 8);
VH CDR3: GAGYNFDGAYRFFDF (SEQ ID No. 9);
VL CDR1: RSSQRLVHSNGNTYLH (SEQ ID No. 10);
VL CDR2: RVSNRFP (SEQ ID No. 11); and
VL CDR3: SQSTHVPYT (SEQ ID No. 12).
The one or more CDRs each independently may or may not comprise one or more
amino acid mutations (eg substitutions) compared to the sequences given as SEQ ID
No. 7 to 12, provided that the resultant antibody retains the ability to selectively bind to
TRBC1.
Studies have shown that CDRs L3 and H3 are prevalently responsible for high energy
interactions with the antigen, so the antibody or functional fragment thereof, may
comprise VH CDR3 and/or VL CDR3 as outlined above.
Using phage display, several additional antibody binding domains have been identified
which are highly selective for binding TRBC1 over TRBC2, as described in Example
The agent may comprise an antibody or a functional fragment thereof having a variable
heavy chain (VH) and/or a variable light chain (VL) which comprises one or more of the
complementarity determining regions (CDR3s) shown in the Table 1.
Table 1
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Clone ID VH germline ID VL germline ID Heavy CDR3 Light CDR3 TRBC1 binding TRBC2 Binding
CP_01_E09 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) AHNSSSWSF..............DY QQYDNLP.........LT 403248 318
CP_01_D12 Vh3_DP-46_(3-30.3) Vk1_L12 GGDTYGFL...............DN QQFNAYP.........LT 392753 298
CP_01_D10 Vh3_DP-49_(3-30.5) Vk1_DPK9_(O12,O2) GGGSFGAF...............DI QQYNSYP.........LT 370612 306
CP_01_C08 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) GYSSSWYL...............DY QQYDNLP.........LT 352814 426
CP_01_C11 Vh1_DP-8,75_(1-02) Vlambda6_6a GGAG...................WN QSHDSSN.........VV 349231 622
CP_01_F03 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) GYXASSWSQ..............GL QQYDNLP.........PT 335088 306
CP_01_E07 Vh3_DP-49_(3-30.5) Vk2_DPK12_(A2) DLGGSGGAF..............DI MQSIQL..........YT 332307 394
CP_01_D03 Vh3_DP-49_(3-30.5) Vk3_DPK21_(L2) NKQYGM.................DV QQYHRWP.........LT 327666 452
CP_01_F06 Vh3_DP-49_(3-30.5) Vk4_DPK24_(B3) DDGAM..................RY QQYYDSP.........YT 325058 286
CP_01_F02 Vh3_DP-46_(3-30.3) Vk1_A30 AGYSYA.................DY LQHNSYP.........LT 301955 508
CP_02_C03 Vh3_DP-49_(3-30.5) Vk4_DPK24_(B3) GGRYSSNYF..............DY QQYFGT..........PT 274905 374
CP_02_D10 Vh3_DP-50_(3-33) Vk3_L16 VGEGSAM................DV QQYNDWP.........LT 259096 517
CP_02_B01 Vh3_DP-46_(3-30.3) Vlambda6_6a VSSHYDSSGYYAGGF........DY QSFDTNSL........WV 258840 341
CP_02_D02 Vh3_DP-49_(3-30.5) Vk1_DPK1_(O18,O8) GRDSSSWSP..............AY QQYDNLP.........LT 256223 393
CP_02_A02 Vh3_DP-49_(3-30.5) Vlambda2_DPL11_(2a2) VTTYSGLDF..............DY SSYTSSST........VV 252590 385
CP_02_D04 Vh3_DP-46_(3-30.3) Vk1_DPK9_(O12,O2) KGAVVVPGAL.............DY QQYNSYP.........LT 252076 493
CP_01_E10 Vh3_DP-49_(3-30.5) Vk1_DPK9_(O12,O2) NSLYGGNSA..............DL QQTFTTP.........IT 238172 679
CP_01_H08 Vh3_DP-49_(3-30.5) Vk1_DPK1_(O18,O8) DGGGGRF................DY QQYDNLP.........LT 223591 381
CP_01_F11 Vh3_DP-46_(3-30.3) Vlambda6_6a GGGALGRGM..............DV QSYDTNN.........VV 222976 481
CP_01_F09 Vh5_DP-73_(5-51) Vk1_DPK9_(O12,O2) LLRSGGQSYAF............DI QQSYSTP.........LT 217934 308
CP_02_D05 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) GYSSSWSF...............DY QQYDNLP.........IT 212579 440
CP_02_A09 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) AGSSGWTL...............DY QQYDNLP.........LT 202054 336
CP_02_D03 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) DKGWGF.................DY QQYDNLP.........LT 199403 543
CP_02_C11 Vh5_DP-73_(5-51) Vlambda6_6a LGVVRGVMKGF............DY QSYDSSN.........VV 189481 392
CP_01_H10 Vh3_DP-49_(3-30.5) Vk1_DPK1_(O18,O8) SSYSSSWGM..............DV QQYDNLP.........LT 179830 424
CP_02_C04 Vh3_DP-49_(3-30.5) Vk1_DPK9_(O12,O2) ANSWSAGGM..............DV QQYDDLP.........LT 172937 722
CP_01_G03 Vh3_DP-46_(3-30.3) Vk2_DPK13_(O11,O1) ERGRGYSYM..............DV MQRIEFP.........LT 168169 360
CP_01_G06 Vh3_DP-46_(3-30.3) Vlambda6_6a VARGIHDAF..............DI QSYDNTRH........WV 166703 307
CP_01_D06 Vh1_DP-8,75_(1-02) Vlambda6_6a RHGM...................DV QSYDSSN.........VV 162783 287
CP_02_B03 Vh5_DP-73_(5-51) Vlambda6_6a FDSSGYYY...............DY QSYDSSN.........VV 158809 312
CP_02_A12 Vh3_DP-46_(3-30.3) Vk3_DPK21_(L2) DLVTTGAF...............DT QQHNDWP.........LT 152968 280
CP_01_H03 Vh3_DP-49_(3-30.5) Vlambda6_6a AIRVSGTPENGF...........DV QSYHSSNL........WV 151902 590
CP_01_G08 Vh6_DP-74_(6-1) Vk2_DPK16_(A23) VRITHGM................DV MQATHFP.........QT 137502 736
CP_01_A06 Vh3_DP-49_(3-30.5) Vk4_DPK24_(B3) GKLAF..................DI QQYYSTP.........YT 136525 354
CP_02_A04 Vh3_DP-49_(3-30.5) Vlambda6_6a NGDSSGYHTSPNWYF........XL QSYDDSNY........WV 130318 385
CP_01_E08 Vh3_DP-49_(3-30.5) Vlambda2_2c VSTDSSSM...............DV SSYAGSNTL.......FV 126690 545
CP_01_A08 Vh3_DP-49_(3-30.5) Vk1_DPK6_(L19) TSQDPGAF...............DI QQANSFP.........LT 117913 270
CP_01_D01 Vh3_DP-49_(3-30.5) Vlambda6_6a AESGVYSSNGM............DV QSYDSSI.........WV 116603 204
CP_02_A07 Vh3_DP-50_(3-33) Vlambda6_6a VDRVRSGM...............DV QSYDSIH.........WV 105730 496
CP_02_B08 Vh3_DP-49_(3-30.5) Vlambda6_6a IGQYCSSTSCYM...........DV QSYDSSTH........WV 96003 795
CP_01_D09 Vh3_DP-49_(3-30.5) Vk1_DPK1_(O18,O8) DLGGSGGAF..............DI QQYDNLP.........LT 92079 282
CP_01_G07 Vh3_DP-49_(3-30.5) Vlambda6_6a DSDAGYF................DL QSFTSSTL........YV 77222 313
CP_01_A05 Vh3_DP-49_(3-30.5) Vk3_DPK21_(L2) ASIVASGAF..............DI QQYNKWP.........LT 75698 705
CP_02_A08 Vh3_DP-49_(3-30.5) Vlambda6_6a AGGSNAF................DI QSYDDSNY........WV 73410 295
CP_02_D07 Vh3_DP-49_(3-30.5) Vlambda6_6a VSTDSYGRQNWF...........DP QSYDSSNH........WV 72274 367
CP_01_C04 Vh3_DP-49_(3-30.5) Vk1_DPK9_(O12,O2) QYTSGRLAYYYHYM.........DV QQSYSTP.........RT 65702 286
CP_01_A07 Vh1_DP-8,75_(1-02) Vlambda3_DPL16_(3l) GIRGAF.................DI NSRDSSGNPN......WV 63917 238
CP_01_H02 Vh3_DP-49_(3-30.5) Vlambda6_6a VGYSTTQL...............DY QSYDSSNL........WV 63410 266
CP_01_F10 Vh3_DP-49_(3-30.5) Vlambda6_6a MAGSYYAF...............DI QSYDSSNH........WV 58027 372
CP_02_C10 Vh3_DP-49_(3-30.5) Vlambda1_DPL2_(1c) VGDYYDSSGYLDWYF........DL AVWDDRLNG.......WV 53460 488
CP_02_B05 Vh3_DP-49_(3-30.5) Vk1_L12 GSDTTSFVS..............DY QQYDSYS.........LT 51480 315
CP_01_G04 Vh3_DP-49_(3-30.5) Vlambda3_3p AGHYYYYM...............DV QSADSSGTN.......MV 50811 354
CP_01_F08 Vh3_DP-49_(3-30.5) Vlambda6_6a VTGYPDYYDSSGF..........DY QSYDSSNH........WV 43115 562
CP_01_G05 Vh3_DP-49_(3-30.5) Vlambda6_6a VEGGPPYYF..............DH QSYDTRNQ........WV 42289 409
CP_02_A03 Vh3_DP-49_(3-30.5) Vk4_DPK24_(B3) NGLDNYGM...............DV QQYYSTP.........YT 39382 322
CP_01_B09 Vh5_DP-73_(5-51) Vk1_DPK9_(O12,O2) LGTTKRAF...............DI QQSYST..........RT 38766 803
CP_01_A10 Vh3_DP-49_(3-30.5) Vlambda1_DPL3_(1g) VYVDHEGM...............DV AAWDDSLF........WL 38613 298
CP_01_H04 Vh3_DP-49_(3-30.5) Vk2_DPK13_(O11,O1) WSGSGF.................DY MQRIEFP.........LT 34030 305
CP_02_B04 Vh3_DP-49_(3-30.5) Vk4_DPK24_(B3) DFGWGGAF...............DI QQYYNTP.........LI 30975 348
CP_02_A05 Vh5_DP-73_(5-51) Vlambda6_6a VVGGTQH................DY QSYDSSI.........VV 30140 309
CP_01_F07 Vh3_DP-49_(3-30.5) Vlambda6_6a NWLLYYGDPQQNAF.........DI QSYDSTNL........WV 29443 331
CP_01_H01 Vh5_DP-73_(5-51) Vk1_DPK9_(O12,O2) LYFDWFADSQNAF..........DI QQSYSTP.........LT 26847 349
CP_01_G10 Vh3_DP-49_(3-30.5) Vlambda3_DPL16_(3l) VGYQPLLYADYYF..........DY NSRDSSGNH.......LV 26520 360
CP_01_G11 Vh3_DP-49_(3-30.5) Vk1_DPK9_(O12,O2) GAMGL..................DY QQSYSTP.........FT 26087 292
CP_01_G01 Vh3_DP-49_(3-30.5) Vlambda3_DPL16_(3l) VYYLSGVHAF.............DV DSRDTRVNX.......WI 25464 423
CP_01_A12 Vh3_DP-46_(3-30.3) Vk1_DPK1_(O18,O8) TERWLQF................DY QQYDNL..........PS 23458 331
CP_01_H05 Vh3_DP-49_(3-30.5) Vk2_DPK15_(A19,A3) NGDYAF.................DY MQALQTP.........YT 20298 322
CP_02_B07 Vh3_DP-49_(3-30.5) Vlambda6_6a ASRYSGSYHF.............DY QSYDSSN.........VV 19598 217
CP_01_G09 Vh3_DP-46_(3-30.3) Vlambda2_DPL11_(2a2) HGSQGGF................DI SSYTSSST........LV 18725 449
CP_02_C02 Vh3_DP-49_(3-30.5) Vk2_DPK15_(A19,A3) VGYMGGM................DV MQALQTPP........YT 18320 468
CP_01_D05 Vh3_DP-49_(3-30.5) Vlambda6_6a NTPGIAAAGP.............DS QSYDSTNH........WV 17240 299
CP_01_D08 Vh3_DP-49_(3-30.5) Vlambda6_6a VGTTTVTSF..............DY QSYDSANL........WV 16499 291
CP_02_A11 Vh3_DP-46_(3-30.3) Vlambda6_6a VGGPLNDAF..............DI QSFDENIS........WV 13370 329
CP_02_D08 Vh3_DP-49_(3-30.5) Vk3_DPK22_(A27) HSSGGAF................DI HQSATSP.........LT 12277 560
Where the agent is a domain antibody it may comprise 3 CDRs, i.e. either VH CDR1-
CDR3 or VL CDR1-CDR3.
The agent may comprise an antibody of functional fragment thereof which comprises a
variable heavy chain (VH) having the amino acid sequence shown as SEQ ID No. 1
and a variable light chain (VL) having the amino acid sequence shown as SEQ ID No.
P104381PCT
SEQ_ID_1 Jovi-1 VH
EVRLQQSGPDLIKPGASVKMSCKASGYTFTGYVMHWVKQRPGQGLEWIGFINPYN
DDIQSNERFRGKATLTSDKSSTTAYMELSSLTSEDSAVYYCARGAGYNFDGAYRFF
DFWGQGTTLTVSS
SEQ_ID_2 Jovi-1 VL
DVVMTQSPLSLPVSLGDQASISCRSSQRLVHSNGNTYLHWYLQKPGQSPKLLIYRV
SNRFPGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQSTHVPYTFGGGTKLEIKR
The agent may comprise an ScFv having the amino acid sequence shown as SEQ ID
No. 3.
SEQ_ID_3 Jovi-1 scFv
EVRLQQSGPDLIKPGASVKMSCKASGYTFTGYVMHWVKQRPGQGLEWIGFINPYN
DDIQSNERFRGKATLTSDKSSTTAYMELSSLTSEDSAVYYCARGAGYNFDGAYRFF
DFWGQGTTLTVSSGGGGSGGGGSGGGGSDVVMTQSPLSLPVSLGDQASISCRSS
QRLVHSNGNTYLHWYLQKPGQSPKLLIYRVSNRFPGVPDRFSGSGSGTDFTLKISR
VEAEDLGIYFCSQSTHVPYTFGGGTKLEIKR
Alternatively, the agent may comprise an antibody or functional fragment thereof which
comprises:
(i) the heavy chain CDR3 and/or the light chain CDR3;
(ii) heavy chain CDR1, CDR2 and CDR3 and/or light chain CDR1, CDR2
and CDR3; or
(iii) the variable heavy chain (VH) and/or the variable light chain (VL);
from one of the scFvs shown as SEQ ID No. 13-22.
In the sequences shown as SEQ ID No. 13-22, the VH and VL portions of the sequence
are shown in bold and the CDR1 and CDR2 sequences for the heavy and light chains
are underlined. The CDR3 sequences for VH and VL are given in Table 1.
SEQ ID No. 13_(CP_01_E09)
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARAHNSSSWSFDY
WGQGTLVTVSSGGGGSGGGGSGGGASDIQMTQSPSSLSASVGDRVTITCRASQSI
P104381PCT
SSYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATY
YCQQYDNLPLTFGGGTKVDIKRTAAA
SEQ ID No. 14 (CP_01_D12)
EVQLLESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGGDTYGFLDN
WGQGTMVTVSSGGGGSGGGGSGGGASDIQMTQSPSTLSASVGDRVTITCRASQS
ISSWLAWYQQKPGKAPKLLIYKASSLESGVPSRFSGSGSGTDFTLTISSLQPEDFA
TYYCQQFNAYPLTFGGGTKVEIKRTAAA
SEQ ID No. 15 (CP_01_D10)
QVQLVESGGGLVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSSKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKGGGSFGAFDIW
GQGTLVTVSSGGGGSGGGGSGGGASDIQMTQSPSSLSASVGDRVTITCRASQSIS
RYLNWYQQKPGKAPNLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDFATY
YCQQYNSYPLTFGGGTKLEIKRTAAA
SEQ ID No. 16 (CP_01_C08)
EVQLLESGGGAVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCASGYSSSWYLDY
WGQGTLVTVSSGGGGSGGGGSGGGASDIQMTQSPSSVSASVGDRVTITCQASQD
ISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIAT
YYCQQYDNLPLTFGGGTKVEIKRTAAA
SEQ ID No. 17 (CP_01_C11)
QVQLVESGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINP
NSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCASGGAGWNWG
QGTMVTVSSGGGGSGGGGSGGGASNFMLTQPHSVSESPGKTATISCTRSSGSIAS
NYVQWYQQRPGSAPTTVIYEDNQRPFGVPDRFSGSIDSSSNSASLTISGLKTEDEA
DYYCQSHDSSNVVFGGGTQLTVLGQPAA
SEQ ID No. 18 (CP_01_F03)
EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGY?ASSWSQG
LWGQGTLVTVSSGGGGSGGGGSGGGASDIQMTQSPSSLSASVRDRVTITCQASQ
DISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIA
TYYCQQYDNLPPTFGGGTKVEIKRTAAA
P104381PCT
SEQ ID No. 19 (CP_01_E07)
QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDLGGSGGAFDI
WGQGTLVTVSSGGGGSGGGGSGGGASDIVMTQTPHSLSVTPGQPASISCKSSQS
LLYSDGKTYLYWYLQKPGQPPQLLIYEVSNRFSGVPDRFSGSGSGTDFTLKISRVE
AEDVGVYYCMQSIQLYTFGQGTKVDIKRTAAA
SEQ ID No. 20 (CP_01_D03)
QVQLVESGGGVVQPGRSLRLSCAAPGFTFSSYGMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARNKQYGMDVWG
QGTLVTVSSGGGGSGGGGSGGGASDIVMTQSPATLSLAPGERATLSCRASQSVG
SNLAWYQQKPGQAPSLLIYDASTRATGIPARFSGSGSGTDFTLTISSLQSEDIAVYY
CQQYHRWPLTFGGGTKVEIKRTAAA
SEQ ID No. 21 (CP_01_F06)
EVQLLESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKDDGAMRYWGQ
GTMVTVSSGGGGSGGGGSGGGASDIQMTQSPDSLAVSLGERATINCKSSQSVLY
SSNNKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQA
EDVAVYYCQQYYDSPYTFGQGTKVDIKRTAAA
SEQ ID No. 22 (CP_01_F02)
QVQLVESGGGVVQPGRPLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARAGYSYADYWG
QGTMVTVSSGGGGSGGGGSGGGASDIQMTQSPSSLSASVGDRVTITCRASQGIR
NDLGWYQQKPGKAPKRLIYAASSLQSGVPSRFSGSGSGTEFTLTISSLQPEDFATY
YCLQHNSYPLTFGGGTKVDIKRTAAA
TRBC2-SPECIFIC
Using phage display, several antibody binding domains have been identified which are
highly selective for binding TRBC2 over TRBC1, as described in Example 12.
The agent may comprise an antibody or a functional fragment thereof having a variable
heavy chain (VH) and/or a variable light chain (VL) which comprises one or more of the
complementarity determining regions (CDR3s) shown in the Table 2.
P104381PCT
Table 2
Clone ID VH dp number VL dp number CDR3 groupHeavy CDR3 CDR3 groupLight CDR3 TRBC2 binding TRBC1 Binding
CP_03_E05 Vh3_DP-47_(3-23) Vlambda6_6a 38 TRSSGAF................DI 11 HSYDSNNH........SV 217270 1617
CP_03_D05 Vh1_DP-8,75_(1-02) Vlambda3_DPL23_(3r) 33 PRGRGSAF...............DI 27 QAWDTNLG........GV 212721 762
CP_03_H06 Vh3_DP-35_(3-11) Vlambda6_6a 20 ARVGGM.................DV 19 QSFDADNLH.......VV 167971 391
CP_03_C12 Vh1_DP-8,75_(1-02) Vk2_DPK12_(A2) 27 DTGPI..................DY 5 MQGIQLP.........PT 167371 789
CP_03_G02 Vh1_DP-7_(1-46) Vk1_DPK9_(O12,O2) 10 GVWNSGSYLGF............DY 30 QQSYSTP.........LT 151586 787
CP_03_D04 Vh3_DP-46_(3-30.3) Vlambda6_6a 28 GGFTVPGGAF.............DI 13 QSYDASN.........VI 143051 1210
CP_03_F10 Vh1_DP-8,75_(1-02) Vlambda2_2c 42 FGERYAF................DI 9 SAYTGSN.........YV 139767 1683
CP_03_G09 Vh6_DP-74_(6-1) Vlambda3_3j 34 DQWLANYYYYGM...........DV 34 QVWDSNS.........WV 138659 979
CP_03_F09 Vh1_DP-7_(1-46) Vlambda6_6a 8 NRGGSYKSVGM............DV 36 QSYDEVS.........VV 131852 889
CP_03_D09 Vh1_DP-15_(1-08) Vlambda6_6a 11 VSSYYGM................DV 28 QSYNSSNH........WV 128690 544
CP_03_F02 Vh1_DP-15_(1-08) Vlambda6_6a 3 APASSAH................DH 14 QSYDSSH.........VV 127081 1507
CP_02_E03 Vh3_DP-46_(3-30.3) Vk1_DPK9_(O12,O2) 16 QRGYYYGM...............DV 12 QQSRSTP.........LT 122650 1979
CP_03_H07 Vh3_DP-31_(3-09) Vlambda2_DPL11_(2a2) 14 SSVAAGAF...............DI 22 SSYTSSST........WV 120948 1233
CP_03_C02 Vh5_DP-73_(5-51) Vlambda2_DPL10_(2b2) 13 LSGRGLGF...............DY 10 SSYAGSSNL.......WV 100238 1904
CP_03_E09 Vh1_DP-8,75_(1-02) Vlambda2_DPL11_(2a2) 5 DHYF...................DY 21 NSYTRSST........LV 99580 1011
CP_03_D08 Vh3_DP-46_(3-30.3) Vlambda6_6a 19 SGRRVTAI...............DY 8 QSYDDTN.........VV 92074 453
CP_03_E11 Vh1_DP-8,75_(1-02) Vlambda3_3h 37 MGRYSSSW...............NI 3 QAWDTNIG........GV 91813 940
CP_03_B05 Vh5_DP-73_(5-51) Vlambda2_DPL10_(2b2) 12 HSRFGPAF...............DI 23 SSYAGSNN........YV 88004 815
CP_03_H02 Vh1_DP-8,75_(1-02) Vlambda3_DPL23_(3r) 25 DREAF..................DI 3 QAWDTNIG........GV 87576 1829
CP_03_D02 Vh5_DP-73_(5-51) Vlambda2_DPL10_(2b2) 7 LRGRYSYGYSDAF..........DI 17 SSYAGSST........FV 84907 1096
CP_03_E01 Vh1_DP-8,75_(1-02) Vlambda3_DPL16_(3l) 36 LLNAVTYAF..............DI 4 NSRDSSGF........PV 81606 498
CP_03_C11 Vh1_DP-8,75_(1-02) Vlambda2_DPL11_(2a2) 2 IGVIGGF................DY 18 SSYTSSS.........IL 78572 1079
CP_03_B12 Vh3_DP-47_(3-23) Vlambda6_6a 9 IEYSSSSPYF.............DY 16 QSYDSNNR........VL 70734 1120
CP_03_E03 Vh1_DP-7_(1-46) Vlambda3_DPL16_(3l) 18 DLLPTTVTTTGAF..........DI 7 SSRDSSGNH.......LV 69661 356
CP_03_F01 Vh1_DP-8,75_(1-02) Vlambda3_DPL23_(3r) 40 DSGSYS.................DY 3 QAWDTNIG........GV 66921 1633
CP_03_C01 Vh6_DP-74_(6-1) Vlambda3_3j 31 ASYPYYYYYYGM...........DV 29 QVWDSSTAN.......WV 58194 825
CP_03_G07 Vh6_DP-74_(6-1) Vlambda6_6a 41 ALGHF..................DF 32 QSYDSSNHH.......VV 57147 1278
CP_03_E02 Vh5_DP-73_(5-51) Vlambda2_DPL11_(2a2) 35 FTTGSAL................YM 26 SSYAGNSN........LV 52212 362
CP_03_C07 Vh1_DP-8,75_(1-02) Vlambda3_DPL23_(3r) 17 DASGY..................DY 3 QAWDTNIG........GV 43547 1074
CP_03_H04 Vh1_DP-8,75_(1-02) Vlambda1_DPL5_(1b) 1 DLGTYYYGSGD............DY 2 GTWDSSLSAG......QV 35180 1103
CP_03_E06 Vh1_DP-8,75_(1-02) Vlambda3_DPL16_(3l) 39 VGELLGAF...............DI 35 SSLDSNDNH.......PI 34777 917
CP_03_H03 Vh1_DP-5_(1-24) Vlambda1_DPL2_(1c) 15 GL.....................GV 37 AAWDDSLNG.......YV 33358 1405
CP_03_G11 Vh5_DP-73_(5-51) Vlambda2_DPL12_(2e) 23 HSGVGGLAF..............DI 31 SSYAGSST........YV 30854 836
CP_03_G01 Vh6_DP-74_(6-1) Vk1_L9 4 GGSIAAALAF.............DI 20 HQYDVYP.........PT 30762 1039
CP_03_H01 Vh1_DP-15_(1-08) Vlambda3_DPL16_(3l) 30 VEYSRNGM...............DV 6 NSRDSSGNH.......LV 29826 1203
CP_03_F11 Vh1_DP-15_(1-08) Vlambda6_6a 22 GRYN...................LI 15 QSYDSSN.........WV 24172 1152
CP_03_C06 Vh1_DP-14_(1-18) Vlambda6_6a 32 LDYYYGM................DV 33 QSYDSSN.........QV 23031 937
CP_03_D03 Vh1_DP-15_(1-08) Vlambda6_6a 26 GGLSSAF................DI 24 QSYDSSN.........VV 22905 1283
CP_03_G05 Vh5_DP-73_(5-51) Vlambda2_DPL12_(2e) 6 YGGGL..................DV 25 SSYAGSYT........LV 22037 813
CP_03_G12 Vh3_DP-47_(3-23) Vlambda2_DPL11_(2a2) 21 PDHLTVF................DY 1 SSYTPSS.........VL 20349 942
CP_03_C10 Vh1_DP-8,75_(1-02) Vlambda3_DPL23_(3r) 24 VGYYGM.................DV 3 QAWDTNIG........GV 18438 896
CP_03_F04 Vh1_DP-8,75_(1-02) Vlambda3_DPL23_(3r) 29 YEGYAGF................DY 3 QAWDTNIG........GV 13541 1047
The agent may comprise an antibody or functional fragment thereof which comprises:
(i) the heavy chain CDR3 and/or the light chain CDR3;
(ii) Heavy chain CDR1, CDR2 and CDR3 and/or light chain CDR1, CDR2 and
CDR3; or
(iii) the variable heavy chain (VH) and/or the variable light chain (VL);
from one of the scFvs shown as SEQ ID No. 23-32.
In the sequences shown as SEQ ID No. 23-32, the VH and VL portions of the sequence
are shown in bold and the CDR1 and CDR2 sequences for the heavy and light chains
are underlined. The CDR3 sequences for VH and VL are given in Table 2.
SEQ ID No. 23 (CP_03_E05)
P104381PCT
EVQLVESGGGVVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGS
GGSTYYADSVKGRFSISRDNSKNTLYLQMNSLRAEDTAVYYCARTRSSGAFDIWG
QGTLVTVSSGGGGSGGGGSGGGASNFMLTQPHSVSESPGKTVTISCTRSSGSIAS
KYVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDTSSNSASLTISGLRTEDEA
DYYCHSYDSNNHSVFGGGTKVTVLGQPAA
SEQ ID No. 24 (CP_03_D05)
QVQLVESGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINP
NSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCASPRGRGSAFDI
WGQGTLVTVSSGGGGSGGGGSGGGASSYELTQPPSVSVSPGQTATISCSGDQLG
GKYGHWYQKKPGQSPVLVLYQDRKRPAGIPERFSGSSSGNTITLTISGTQAVDEA
DYYCQAWDTNLGGVFGGGTKVTVLGQPAA
SEQ ID No. 25 (CP_03_H06)
QVQLVESGGGLVKPGGSLRLSCAASGFTFSDYYMSWIRQAPGKGLEWVSYISSS
GSTIYYADSVEGRFTISRDNAKNSLYLQMNSLRTEDTAVYYCARARVGGMDVWGQ
GTMVTVSSGGGGSGGGGSGGGASNFMLTQPHSVSESPGKTVTISCTRSSGSIASN
YVQWYQQRPGSSPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTEDEAD
YYCQSFDADNLHVVFGGGTKLTVLGQPAA
SEQ ID No. 26 (CP_03_C12)
EVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINP
NSGGTNYAQKFQGRVTMTRDTSISTAYMELSSLRSEDTAVYYCARDTGPIDYWGQ
GTMVTVSSGGGGSGGGGSGGGASDIVMTQTPLSLSVTPGQPASISCKSSQSLLHS
DGKTYLYWYLQKPGQPPQLLVYEVSNRFSGVPDKFSGSGSGTDFTLKISRVEAED
VGVYYCMQGIQLPPTFGGGTKVDIKRTAAA
SEQ ID No. 27 (CP_03_G02)
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGIINPSG
GSTSYAQKFQGRVTMTRDTSTSIVYMELSSLRSEDTAVYYCARGVWNSGSYLGFD
YWGQGTLVTVSSGGGGSGGGGSGGGASDIQMTQSPSSLSASVGDRVTITCQASQ
DISNYLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQPEDF
ATYYCQQSYSTPLTFGGGTKLEIKRTAAA
SEQ ID No. 28 (CP_03_D04)
EVQLVESGGGVVQPGRSLRLSCAASGFTFSSYAMHWVRQAPGKGLEWVAVISYD
GSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGGFTVPGGAFD
P104381PCT
IWGQGTLVTVSSGGGGSGGGGSGGGASNFMLTQPHSVSDSPGKTVTISCTRSSG
RIGSNFVQWYQQRPGSSPTTVIYEDDQRPSGVPARFSGSIDSSSNSASLTISGLTTA
DEAGYYCQSYDASNVIFGGGTKLTVLGQPAA
SEQ ID No. 29 (CP_03_F10)
EVQLVESGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGRINP
NSGGTNYAQKFQGRVTMTRDTSISTAYMELSSLRSEDTAVYYCARFGERYAFDIW
GQGTLVTVSSGGGGSGGGGSGGGASQSELTQPPSASGSPGQSVTISCTGTSTDV
GAFHFVSWYQHTPGKAPKLLISEVRKRASGVPDRFSGSRSGNTASLTVSGLQSED
EADYFCSAYTGSNYVFGSGTKLTVLGQPAA
SEQ ID No. 30 (CP_03_G09)
QVQLQQSGPGLVKPSQTLSLTCAISGDSVSSNSAAWNWIRQSPSRGLEWLGRTY
YRSKWYNDYAVSVKSRITINPDTSKNQFSLQLNSVTPEDTAVYYCARDQWLANYY
YYGMDVWGQGTLVTVSSGGGGSGGGGSGGGASSYELTQPLSVSVALGQTARITC
GGNNIGSKNV
AGDEADYYCQVWDSNSWVFGGGTKLTVLGQPAA
SEQ ID No. 31 (CP_03_F09)
QMQLVQSGAEVKKPGASVKVSCKASGYTFASYYMHWVRQAPGQGLEWMGIINP
SGGSTSYAQKFQGRVTMTRDTSTSTVYMELSRLRSDDTAVYYCASNRGGSYKSV
GMDVWGQGTTVTVSSGGGGSGGGGSGGGASNFMLTQPQSVSESPGKTVTISCT
RSSGNFASKYVQWYQQRPGSSPTTVIYENYQRPSGVPDRFSGSIDSSSNSATLTIS
GLKTEDEADYYCQSYDEVSVVFGGGTQLTVLGQPAA
SEQ ID No. 32 (CP_03_D09)
EVQLVQSGAEVKKPGSSVKVSCEASGYTFTSYAISWVRQAPGQGLEWMGWMNP
NSGNTGYAQKFQGRVTMTRNTSISTAYMELSSLRSEDTAVYYCARVSSYYGMDV
WGQGTLVTVSSGGGGSGGGGSGGGASNFMLTQPLSVSESPGKTVTISCTRSSGSI
ASNYVQWYQQRPGSAPTTVIYEDNQRPSGVPDRFSGSIDSSSNSASLTISGLKTED
EADYYCQSYNSSNHWVFGGGTKVTVLGQPAA
Variants of the above amino acid sequences may also be used in the present invention,
provided that the resulting antibody binds TRBC1 or TRBC2 and does not significantly
cross-react. Typically such variants have a high degree of sequence identity with one
of the sequences specified above.
P104381PCT
Methods of alignment of sequences for comparison are well known in the art.
The NCBI Basic Local Alignment Search Tool (BLAST) is available from several
sources, including the National Center for Biotechnology Information (NCBI, Bethesda,
Md.) and on the internet, for use in connection with the sequence analysis programs
blastp, blastn, blastx, tblastn and tblastx. A description of how to determine sequence
identity using this program is available on the NCBI website on the internet.
Variants of the VL or VH domain or scFv typically have at least about 75%, for example
at least about 80%, 90%, 95%, 96%, 97%, 98% or 99% sequence identity with the
sequences given as SEQ ID Nos 1-3, 13-32..
Typically variants may contain one or more conservative amino acid substitutions
compared to the original amino acid or nucleic acid sequence. Conservative
substitutions are those substitutions that do not substantially affect or decrease the
affinity of an antibody to bind TRBC1 or TRBC2. For example, a human antibody that
specifically binds TRBC1 or TRBC2 may include up to 1, up to 2, up to 5, up to 10, or
up to 15 conservative substitutions in either or both of the VH or VL compared to any
of the sequences given as SEQ ID No. 1-3 or 13-32 and retain specific binding to
TRBC1 or TRBC2.
Functionally similar amino acids which may be exchanged by way of conservative
substitution are well known to one of ordinary skill in the art. The following six groups
are examples of amino acids that are considered to be conservative substitutions for
one another: 1) Alanine (A), Serine (S), Threonine (T); 2) Aspartic acid (D), Glutamic
acid (E); 3) Asparagine (N), Glutamine (Q); 4) Arginine (R), Lysine (K); 5) Isoleucine
(I), Leucine (L), Methionine (M), Valine (V); and 6) Phenylalanine (F), Tyrosine (Y),
Tryptophan (W).
PREPARATION OF ANTIBODIES
Preparation of antibodies may be performed using standard laboratory techniques.
Antibodies may be obtained from animal serum, or, in the case of monoclonal
antibodies or fragments thereof, produced in cell culture. Recombinant DNA
technology may be used to produce the antibodies according to established procedure,
in bacterial or mammalian cell culture.
P104381PCT
Methods for the production of monoclonal antibodies are well known in the art. Briefly,
monoclonal antibodies are typically made by fusing myeloma cells with the spleen cells
from a mouse or rabbit that has been immunized with the desired antigen. Herein, the
desired antigen is TRBC1 or TRBC2 peptide, or a TCRβ chain comprising either
TRBC1 or TRBC2.
Alternatively, antibodies and related molecules, particularly scFvs, may be made
outside the immune system by combining libraries of VH and VL chains in a
recombinant manner. Such libraries may be constructed and screened using phage-
display technology as described in Example 12.
IDENTIFICATION OF TRBC1/TRBC2 SELECTIVE ANTIBODIES
Antibodies which are selective for either TRBC1 or TRBC2 may be identified using
methods which are standard in the art. Methods for determining the binding specificity
of an antibody include, but are not limited to, ELISA, western blot,
immunohistochemistry, flow cytometry, Förster resonance energy transfer (FRET),
phage display libraries, yeast two-hybrid screens, co-immunoprecipitation, bimolecular
fluorescence complementation and tandem affinity purification.
To identify an antibody which is selective for either TRBC1 or TRBC2 the binding of the
antibody to each of TRBC1 and TRBC2 is assessed. Typically, this is assessed by
determining the binding of the antibody to each TRBC separately. An antibody which
is selective binds to either TRBC1 or TRBC2 without significant binding to the other
TRBC.
ANTIBODY MIMETICS
The agent may alternatively be a molecule which is not derived from or based on an
immunoglobulin. A number of "antibody mimetic" designed repeat proteins (DRPs)
have been developed to exploit the binding abilities of non-antibody polypeptides.
Repeat proteins such as ankyrin or leucine-rich repeat proteins are ubiquitous binding
molecules which occur, unlike antibodies, intra- and extracellularly. Their unique
modular architecture features repeating structural units (repeats), which stack together
to form elongated repeat domains displaying variable and modular target-binding
surfaces. Based on this modularity, combinatorial libraries of polypeptides with highly
diversified binding specificities can be generated. DARPins (Designed Ankyrin Repeat
Proteins) are one example of an antibody mimetic based on this technology.
P104381PCT
For Anticalins, the binding specificity is derived from lipocalins, a family of proteins
which perform a range of functions in vivo associated with physiological transport and
storage of chemically sensitive or insoluble compounds. Lipocalins have a robust
intrinsic structure comprising a highly conserved β-barrel which supports four loops at
one terminus of the protein. These loops for the entrance to a binding pocket and
conformational differences in this part of the molecule account for the variation in
binding specificity between different lipocalins.
Avimers are evolved from a large family of human extracellular receptor domainsby in
vitro exon shuffling and phage display, generating multi-domain proteins with binding
and inhibitory properties.
Versabodies are small proteins of 3-5kDa with >15% cysteines which form a high
disulfide density scaffold, replacing the hydrophobic core present in most proteins. The
replacement of a large number of hydrophobic amino acids, comprising the
hydrophobic core, with a small number of disulphides results in a protein that is smaller,
more hydrophilic, more resistant to proteases and heat and has a lower density of T-
cell epitopes. All four of these properties result in a protein having considerably
reduced immunogenicity. They may also be manufactured in E. coli, and are highly
soluble and stable.
CONJUGATES
The antibody or mimetic may be a conjugate of the antibody or mimetic and another
agent or antibody, for example the conjugate may be a detectable entity or a
chemotherapeutic entity.
The detectable entity may be a fluorescent moiety, for example a fluorescent peptide.
A “fluorescent peptide” refers to a polypeptide which, following excitation, emits light at
a detectable wavelength. Examples of fluorescent proteins include, but are not limited
to, fluorescein isothiocyanate (FITC), phycoerythrin (PE), allophycocyanin (APC),
green fluorescent protein (GFP), enhanced GFP, red fluorescent protein (RFP), blue
fluorescent protein (BFP) and mCherry.
A selective TRBC1 or TRBC2 agent conjugated to a detectable entity may be used to
determine the TRBC of a malignant T cell.
P104381PCT
A chemotherapeutic entity as used herein refers to an entity which is destructive to a
cell, that is the entity reduces the viability of the cell. The chemotherapeutic entity may
be a cytotoxic drug. A chemotherapeutic agent contemplated includes, without
limitation, alkylating agents, nitrosoureas, ethylenimines/methylmelamine, alkyl
sulfonates, antimetabolites, pyrimidine analogs, epipodophylotoxins, enzymes such as
L-asparaginase; biological response modifiers such as IFNα, IL-2, G-CSF and GM-
CSF; platinium coordination complexes such as cisplatin and carboplatin,
anthracenediones, substituted urea such as hydroxyurea, methylhydrazine derivatives
including N-methylhydrazine (MIH) and procarbazine, adrenocortical suppressants
such as mitotane (o,p'-DDD) and aminoglutethimide; hormones and antagonists
including adrenocorticosteroid antagonists such as prednisone and equivalents,
dexamethasone and aminoglutethimide; progestin such as hydroxyprogesterone
caproate, medroxyprogesterone acetate and megestrol acetate; estrogen such as
diethylstilbestrol and ethinyl estradiol equivalents; antiestrogen such as tamoxifen;
androgens including testosterone propionate and fluoxymesterone/equivalents;
antiandrogens such as flutamide, gonadotropin-releasing hormone analogs and
leuprolide; and non-steroidal antiandrogens such as flutamide.
A TRBC selective agent conjugated to a chemotherapeutic entity enables the targeted
delivery of the chemotherapeutic entity to cells which express either TRBC1 or TRBC2.
BI-SPECIFIC T-CELL ENGAGERS
A wide variety of molecules have been developed which are based on the basic
concept of having two antibody-like binding domains.
Bispecific T-cell engaging molecules are a class of bispecific antibody-type molecules
that have been developed, primarily for the use as anti-cancer drugs. They direct a
host's immune system, more specifically the T cells' cytotoxic activity, against a target
cell, such as a cancer cell. In these molecules, one binding domain binds to a T cell
via the CD3 receptor, and the other to a target cells such as a tumor cell (via a tumor
specific molecule). Since the bispecific molecule binds both the target cell and the T
cell, it brings the target cell into proximity with the T cell, so that the T cell can exert its
effect, for example, a cytotoxic effect on a cancer cell. The formation of the T
cell:bispecific Ab:cancer cell complex induces signaling in the T cell leading to, for
example, the release of cytotoxic mediators. Ideally, the agent only induces the desired
signaling in the presence of the target cell, leading to selective killing.
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Bispecific T-cell engaging molecules have been developed in a number of different
formats, but one of the most common is a fusion consisting of two single-chain variable
fragments (scFvs) of different antibodies. These are sometimes known as BiTEs (Bi-
specific T-cell Engagers).
The agent used in the method of the present invention may be a bi-specific molecule
which selectively recognises TRBC1 or TRBC2 and is capable of activating a T cell.
For example the agent may be a BiTE. The agent used in the method may comprise:
(i) a first domain which binds either TRBC1 or TRBC2; and
(ii) a second domain capable of activating a T cell.
The bi-specific molecule may comprise a signal peptide to aid in its production. The
signal peptide may cause the bi-specific molecule to be secreted by a host cell, such
that the bi-specific molecule can be harvested from the host cell supernatant.
The signal peptide may be at the amino terminus of the molecule. The bi-specific
molecule may have the general formula: Signal peptide - first domain - second domain.
The bi-specific molecule may comprise a spacer sequence to connect the first domain
with the second domain and spatially separate the two domains.
The spacer sequence may, for example, comprise an IgG1 hinge or a CD8 stalk. The
linker may alternatively comprise an alternative linker sequence which has similar
length and/or domain spacing properties as an IgG1 hinge or a CD8 stalk.
The bi-specific molecule may comprise JOVI-1, or a functional fragment thereof, as
defined above.
CHIMERIC ANTIGEN RECEPTOR (CAR)
Chimeric antigen receptors (CARs), also known as chimeric T-cell receptors, artificial
T-cell receptors and chimeric immunoreceptors, are engineered receptors, which graft
an arbitrary specificity onto an immune effector cell. In a classical CAR, the specificity
of a monoclonal antibody is grafted on to a T-cell. CAR-encoding nucleic acids may
be transferred to T-cells using, for example, retroviral vectors. In this way, a large
number of cancer-specific T-cells can be generated for adoptive cell transfer. Phase I
clinical studies of this approach show efficacy.
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The target-antigen binding domain of a CAR is commonly fused via a spacer and
transmembrane domain to an endodomain, which comprises or associates with an
intrcellular T-cell signalling domain. When the CAR binds the target-antigen, this
results in the transmission of an activating signal to the T-cell it is expressed on.
The agent used in the method of the present invention may be a CAR which selectively
recognises TRBC1 or TRBC2. The agent may be a T-cell which expresses a CAR
which selectively recognises TRBC1 or TRBC2.
The CAR may also comprise a transmembrane domain which spans the membrane.
It may comprise a hydrophobic alpha helix. The transmembrane domain may be
derived from CD28, which gives good receptor stability.
The endodomain is the portion of the CAR involved in signal-transmission. The
endodomain either comprises or associates with an intracellular T-cell signalling
domain. After antigen recognition, receptors cluster and a signal is transmitted to the
cell. The most commonly used T-cell signalling component is that of CD3-zeta which
contains 3 ITAMs. This transmits an activation signal to the T-cell after antigen is
bound. CD3-zeta may not provide a fully competent activation signal and additional
co-stimulatory signaling may be needed. For example, chimeric CD28 and OX40 can
be used with CD3-Zeta to transmit a proliferative / survival signal, or all three can be
used together.
The endodomain of the CAR may comprise the CD28 endodomain and OX40 and CD3-
Zeta endodomain.
The CAR may comprise a signal peptide so that when the CAR is expressed inside a
cell, such as a T-cell, the nascent protein is directed to the endoplasmic reticulum and
subsequently to the cell surface, where it is expressed.
The CAR may comprise a spacer sequence to connect the TRBC-binding domain with
the transmembrane domain and spatially separate the TRBC-binding domain from the
endodomain. A flexible spacer allows to the TRBC-binding domain to orient in different
directions to enable TRBC binding.
The spacer sequence may, for example, comprise an IgG1 Fc region, an IgG1 hinge
or a CD8 stalk, or a combination thereof. The linker may alternatively comprise an
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alternative linker sequence which has similar length and/or domain spacing properties
as an IgG1 Fc region, an IgG1 hinge or a CD8 stalk.
It was found that CARs comprising a spacer based on an IgG1 hinge or a CD8 stalk
showed the best performance against Jurkat cells (Figure 15). The spacer may an
therefore comprise an IgG1 hinge or a CD8 stalk or a spacer which has a similar length
and/or domain spacing properties as an IgG1 hinge or a CD8 stalk.
A human IgG1 spacer may be altered to remove Fc binding motifs.
The CAR may comprise the JOVI-1 antibody, or a functional fragment thereof, as
defined above.
The CAR may comprise an amino acid sequence selected from the group consisting of
SEQ ID No. 33, 34 and 35.
>SEQ_ID_33 JOVI-1 CAR with CD8 stalk spacer
METDTLLLWVLLVWIPGSTGEVRLQQSGPDLIKPGASVKMSCKASGYTFTGYVMHW
VKQRPGQGLEWIGFINPYNDDIQSNERFRGKATLTSDKSSTTAYMELSSLTSEDSAV
YYCARGAGYNFDGAYRFFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDVVMTQS
PLSLPVSLGDQASISCRSSQRLVHSNGNTYLHWYLQKPGQSPKLLIYRVSNRFPGV
PDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQSTHVPYTFGGGTKLEIKRSDPTTTPA
PRPPTPAPTIASQPLSLRPEACRPAAGGAVHTRGLDFACDIFWVLVVVGGVLACYSL
LVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGPTRKHYQPYAPPRDFAAYRSRDQR
LPPDAHKPPGGGSFRTPIQEEQADAHSTLAKIRVKFSRSADAPAYQQGQNQLYNEL
NLGRREEYDVLDKRRGRDPEMGGKPRRKNPQEGLYNELQKDKMAEAYSEIGMKG
ERRRGKGHDGLYQGLSTATKDTYDALHMQALPPR
>SEQ_ID_34 JOVI-1 CAR with H-CH2-CH3pvaa spacer
METDTLLLWVLLVWIPGSTGEVRLQQSGPDLIKPGASVKMSCKASGYTFTGYVMHW
VKQRPGQGLEWIGFINPYNDDIQSNERFRGKATLTSDKSSTTAYMELSSLTSEDSAV
YYCARGAGYNFDGAYRFFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDVVMTQS
PLSLPVSLGDQASISCRSSQRLVHSNGNTYLHWYLQKPGQSPKLLIYRVSNRFPGV
PDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQSTHVPYTFGGGTKLEIKRSDPAEPK
SPDKTHTCPPCPAPPVAGPSVFLFPPKPKDTLMIARTPEVTCVVVDVSHEDPEVKFN
WYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI
EKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE
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NNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS
PGKKDPKFWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMNMTPRRPGP
TRKHYQPYAPPRDFAAYRSRDQRLPPDAHKPPGGGSFRTPIQEEQADAHSTLAKIR
VKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGGKPRRKNPQ
EGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQALP
>SEQ_ID_35 JOVI-1 CAR with IgG1 hinge spacer
METDTLLLWVLLVWIPGSTGEVRLQQSGPDLIKPGASVKMSCKASGYTFTGYVMHW
VKQRPGQGLEWIGFINPYNDDIQSNERFRGKATLTSDKSSTTAYMELSSLTSEDSAV
YYCARGAGYNFDGAYRFFDFWGQGTTLTVSSGGGGSGGGGSGGGGSDVVMTQS
PLSLPVSLGDQASISCRSSQRLVHSNGNTYLHWYLQKPGQSPKLLIYRVSNRFPGV
PDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQSTHVPYTFGGGTKLEIKRSDPAEPK
SPDKTHTCPPCPKDPKFWVLVVVGGVLACYSLLVTVAFIIFWVRSKRSRLLHSDYMN
MTPRRPGPTRKHYQPYAPPRDFAAYRSRDQRLPPDAHKPPGGGSFRTPIQEEQAD
AHSTLAKIRVKFSRSADAPAYQQGQNQLYNELNLGRREEYDVLDKRRGRDPEMGG
KPRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYD
ALHMQALPPR
In the CAR sequences given above, one or more of the 6 CDRs each independently
may or may not comprise one or more amino acid mutations (eg substitutions)
compared to the sequences given as SEQ ID No. 7 to 12, provided that the resultant
CAR retains the ability to bind to TRBC1.
Variants of the above amino acid sequences may also be used in the present invention,
provided that the resulting CAR binds TRBC1 or TRBC2 and does not significantly
cross-react. Typically such variants have a high degree of sequence identity with one
of the sequences given as SEQ ID No. 33, 34 or 35.
Variants of the CAR typically have at least about 75%, for example at least about 80%,
90%, 95%, 96%, 97%, 98% or 99% sequence identity with one of the sequences given
as SEQ ID Nos 33, 34 and 35.
NUCLEIC ACID
The present invention further provides a nucleic acid encoding an agent such as a BiTE
or CAR of the first aspect of the invention.
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The nucleic acid sequence may encode a CAR comprising one of the amino acid
sequences shown as SEQ ID No. 33, 34 and 35..
As used herein, the terms “polynucleotide”, “nucleotide”, and “nucleic acid” are
intended to be synonymous with each other.
It will be understood by a skilled person that numerous different polynucleotides and
nucleic acids can encode the same polypeptide as a result of the degeneracy of the
genetic code. In addition, it is to be understood that skilled persons may, using routine
techniques, make nucleotide substitutions that do not affect the polypeptide sequence
encoded by the polynucleotides described here to reflect the codon usage of any
particular host organism in which the polypeptides are to be expressed.
Nucleic acids according to the invention may comprise DNA or RNA. They may be
single-stranded or double-stranded. They may also be polynucleotides which include
within them synthetic or modified nucleotides. A number of different types of
modification to oligonucleotides are known in the art. These include
methylphosphonate and phosphorothioate backbones, addition of acridine or
polylysine chains at the 3' and/or 5' ends of the molecule. For the purposes of the use
as described herein, it is to be understood that the polynucleotides may be modified by
any method available in the art. Such modifications may be carried out in order to
enhance the in vivo activity or life span of polynucleotides of interest.
The terms “variant”, “homologue” or “derivative” in relation to a nucleotide sequence
include any substitution of, variation of, modification of, replacement of, deletion of or
addition of one (or more) nucleic acid from or to the sequence.
VECTOR
The present invention also provides a vector, or kit of vectors, which comprises one or
more nucleic acid sequence(s) of the invention. Such a vector may be used to
introduce the nucleic acid sequence(s) into a host cell so that it expresses a CAR
according to the first aspect of the invention.
The vector may, for example, be a plasmid or a viral vector, such as a retroviral vector
or a lentiviral vector, or a transposon based vector or synthetic mRNA.
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The vector may be capable of transfecting or transducing a T cell or a NK cell.
CELL
The present invention also relates to a cell, such as an immune cell, comprising a CAR
according to the first aspect of the invention.
The cell may comprise a nucleic acid or a vector of the present invention.
The cell may be a T-cell or a natural killer (NK) cell.
T cell may be T cells or T lymphocytes which are a type of lymphocyte that play a
central role in cell-mediated immunity. They can be distinguished from other
lymphocytes, such as B cells and natural killer cells (NK cells), by the presence of a T-
cell receptor (TCR) on the cell surface. There are various types of T cell, as
summarised below.
Helper T helper cells (TH cells) assist other white blood cells in immunologic processes,
including maturation of B cells into plasma cells and memory B cells, and activation of
cytotoxic T cells and macrophages. TH cells express CD4 on their surface. TH cells
become activated when they are presented with peptide antigens by MHC class II
molecules on the surface of antigen presenting cells (APCs). These cells can
differentiate into one of several subtypes, including TH1, TH2, TH3, TH17, Th9, or TFH,
which secrete different cytokines to facilitate different types of immune responses.
Cytolytic T cells (TC cells, or CTLs) destroy virally infected cells and tumor cells, and
are also implicated in transplant rejection. CTLs express the CD8 at their surface.
These cells recognize their targets by binding to antigen associated with MHC class I,
which is present on the surface of all nucleated cells. Through IL-10, adenosine and
other molecules secreted by regulatory T cells, the CD8+ cells can be inactivated to an
anergic state, which prevent autoimmune diseases such as experimental autoimmune
encephalomyelitis.
Memory T cells are a subset of antigen-specific T cells that persist long-term after an
infection has resolved. They quickly expand to large numbers of effector T cells upon
re-exposure to their cognate antigen, thus providing the immune system with "memory"
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against past infections. Memory T cells comprise three subtypes: central memory T
cells (TCM cells) and two types of effector memory T cells (TEM cells and TEMRA
cells). Memory cells may be either CD4+ or CD8+. Memory T cells typically express
the cell surface protein CD45RO.
Regulatory T cells (Treg cells), formerly known as suppressor T cells, are crucial for
the maintenance of immunological tolerance. Their major role is to shut down T cell-
mediated immunity toward the end of an immune reaction and to suppress auto-
reactive T cells that escaped the process of negative selection in the thymus.
Two major classes of CD4+ Treg cells have been described — naturally occurring Treg
cells and adaptive Treg cells.
Naturally occurring Treg cells (also known as CD4+CD25+FoxP3+ Treg cells) arise in
the thymus and have been linked to interactions between developing T cells with both
myeloid (CD11c+) and plasmacytoid (CD123+) dendritic cells that have been activated
with TSLP. Naturally occurring Treg cells can be distinguished from other T cells by
the presence of an intracellular molecule called FoxP3. Mutations of the FOXP3 gene
can prevent regulatory T cell development, causing the fatal autoimmune disease
IPEX.
Adaptive Treg cells (also known as Tr1 cells or Th3 cells) may originate during a normal
immune response.
The cell may be a Natural Killer cell (or NK cell). NK cells form part of the innate
immune system. NK cells provide rapid responses to innate signals from virally infected
cells in an MHC independent manner
NK cells (belonging to the group of innate lymphoid cells) are defined as large granular
lymphocytes (LGL) and constitute the third kind of cells differentiated from the common
lymphoid progenitor generating B and T lymphocytes. NK cells are known to
differentiate and mature in the bone marrow, lymph node, spleen, tonsils and thymus
where they then enter into the circulation.
The CAR cells of the invention may be any of the cell types mentioned above.
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T or NK cells expressing the a CAR according to the first aspect of the invention may
either be created ex vivo either from a patient’s own peripheral blood (1st party), or in
the setting of a haematopoietic stem cell transplant from donor peripheral blood (2nd
party), or peripheral blood from an unconnected donor (3rd party).
Alternatively, T or NK cells expressing a CAR according to the first aspect of the
invention may be derived from ex vivo differentiation of inducible progenitor cells or
embryonic progenitor cells to T or NK cells. Alternatively, an immortalized T-cell line
which retains its lytic function and could act as a therapeutic may be used.
In all these embodiments, CAR cells are generated by introducing DNA or RNA coding
for the CAR by one of many means including transduction with a viral vector,
transfection with DNA or RNA.
The CAR cell of the invention may be an ex vivo T or NK cell from a subject. The T or
NK cell may be from a peripheral blood mononuclear cell (PBMC) sample. T or NK
cells may be activated and/or expanded prior to being transduced with nucleic acid
encoding a CAR according to the first aspect of the invention, for example by treatment
with an anti-CD3 monoclonal antibody.
The T or NK cell of the invention may be made by:
(i) isolation of a T or NK cell-containing sample from a subject or other sources
listed above; and
(ii) transduction or transfection of the T or NK cells with a nucleic acid
sequence(s) encoding a CAR of the invention.
The T or NK cells may then by purified, for example, selected on the basis of expression
of the antigen-binding domain of the antigen-binding polypeptide.
The present invention also provides a kit which comprises a T or NK cell comprising a
CAR according to the first aspect of the invention.
PHARMACEUTICAL COMPOSITION
The present invention also relates to a pharmaceutical composition containing a
plurality of cells expressing a CAR of the first aspect of the invention. The
pharmaceutical composition may additionally comprise a pharmaceutically acceptable
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carrier, diluent or excipient. The pharmaceutical composition may optionally comprise
one or more further pharmaceutically active polypeptides and/or compounds. Such a
formulation may, for example, be in a form suitable for intravenous infusion.
T-CELL LYMPHOMA AND/OR LEUKAEMIA
The present invention relates to agents, cells and methods for treating a T-cell
lymphoma and/or leukaemia.
A method for treating a T-cell lymphoma and/or leukaemia relates to the therapeutic
use of an agent. Herein the agent may be administered to a subject having an existing
disease of T-cell lymphoma and/or leukaemia in order to lessen, reduce or improve at
least one symptom associated with the disease and/or to slow down, reduce or block
the progression of the disease.
The method of the present invention may be used for the treatment of any lymphoma
and/or leukaemia associated with the clonal expansion of a cell expressing a T-cell
receptor (TCR) comprising a β constant region. As such the present invention relates
to a method for treating a disease which involves malignant T cells which express a
TCR comprising a TRBC.
The method of the present invention may be used to treat a T-cell lymphoma in which
the malignant T-cell expresses a TCR comprising a TRBC. ‘Lymphoma’ is used herein
according to its standard meaning to refer to a cancer which typically develops in the
lymph nodes, but may also affect the spleen, bone marrow, blood and other organs.
Lymphoma typically presents as a solid tumour of lymphoid cells. The primary
symptom associated with lymphoma is lymphadenopathy, although secondary (B)
symptoms can include fever, night sweats, weight loss, loss of appetite, fatigue,
respiratory distress and itching.
The method of the present invention may be used to treat a T-cell leukaemia in which
the malignant T-cell expresses a TCR comprising a TRBC. ‘Leukaemia’ is used herein
according to its standard meaning to refer to a cancer of the blood or bone marrow.
The following is an illustrative, non-exhaustive list of diseases which may be treated by
the method of the present invention.
PERIPHERAL T-CELL LYMPHOMA
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Peripheral T-cell lymphomas are relatively uncommon lymphomas and account fewer
than 10% of all non-Hodgkin lymphomas (NHL). However, they are associated with an
aggressive clinical course and the causes and precise cellular origins of most T-cell
lymphomas are still not well defined.
Lymphoma usually first presents as swelling in the neck, underarm or groin. Additional
swelling may occur where other lymph nodes are located such as in the spleen. In
general, enlarged lymph nodes can encroach on the space of blood vessels, nerves,
or the stomach, leading to swollen arms and legs, to tingling and numbness, or to
feelings of being full, respectively. Lymphoma symptoms also include nonspecific
symptoms such as fever, chills, unexplained weight loss, night sweats, lethargy, and
itching.
The WHO classification utilizes morphologic and immunophenotypic features in
conjunction with clinical aspects and in some instances genetics to delineate a
prognostically and therapeutically meaningful categorization for peripheral T-cell
lymphomas (Swerdlow et al.; WHO classification of tumours of haematopoietic and
lymphoid tissues. 4th ed.; Lyon: IARC Press; 2008). The anatomic localization of
neoplastic T-cells parallels in part their proposed normal cellular counterparts and
functions and as such T-cell lymphomas are associated with lymph nodes and
peripheral blood. This approach allows for better understanding of some of the
manifestations of the T-cell lymphomas, including their cellular distribution, some
aspects of morphology and even associated clinical findings.
The most common of the T-cell lymphomas is peripheral T-cell lymphoma, not
otherwise specified (PTCL-NOS) comprising 25% overall, followed by
angioimmunoblastic T-cell lymphoma (AITL) (18.5%)
PERIPHERAL T-CELL LYMPHOMA, NOT OTHERWISE SPECIFIED (PTCL-NOS)
PTCL-NOS comprises over 25% of all peripheral T-cell lymphomas and NK/T-cell
lymphomas and is the most common subtype. It is determined by a diagnosis of
exclusion, not corresponding to any of the specific mature T-cell lymphoma entities
listed in the current WHO 2008. As such it is analogous to diffuse large B-cell
lymphoma, not otherwise specified (DLBCL-NOS).
Most patients are adults with a median age of 60 and a male to female ratio 2:1. The
majority of cases are nodal in origin, however, extranodal presentations occur in
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approximately 13% of patients and most commonly involve skin and gastrointestinal
tract.
The cytologic spectrum is very broad, ranging from polymorphous to monomorphous.
Three morphologically defined variants have been described, including
lymphoepithelioid (Lennert) variant, T-zone variant and follicular variant. The
lymphoepithelioid variant of PTCL contains abundant background epithelioid
histiocytes and is commonly positive for CD8. It has been associated with a better
prognosis. The follicular variant of PTCL-NOS is emerging as a potentially distinct
clinicopathologic entity.
The majority of PTCL-NOS have a mature T-cell phenotype and most cases are CD4-
positive. 75% of cases show variable loss of at least one pan T-cell marker (CD3, CD2,
CD5 or CD7), with CD7 and CD5 being most often downregulated. CD30 and rarely
CD15 can be expressed, with CD15 being an adverse prognostic feature. CD56
expression, although uncommon, also has negative prognostic impact. Additional
adverse pathologic prognostic factors include a proliferation rate greater than 25%
based on KI-67 expression, and presence of more than 70% transformed cells.
Immunophenotypic analysis of these lymphomas has offered little insight into their
biology.
ANGIOIMMUNOBLASTIC T-CELL LYMPHOMA (AITL)
AITL is a systemic disease characterized by a polymorphous infiltrate involving lymph
nodes, prominent high endothelial venules (HEV) and peri-vascular expansion of
follicular dendritic cell (FDC) meshworks. AITL is considered as a de-novo T-cell
lymphoma derived from αβ T-cells of follicular helper type (TFH), normally found in the
germinal centres.
AITL is the second most common entity among peripheral T-cell lymphoma and NK/T-
cell lymphomas, comprising about 18.5% of cases. It occurs in middle aged to elderly
adults, with a median age of 65 years old, and an approximately equal incidence in
males and females. Clinically, patients usually have advanced stage disease, with
generalized lymphadenopathy, hepatosplenomegaly and prominent constitutional
symptoms. Skin rash with associated pruritus is commonly present. There is often
polyclonal hypergammaglobulinemia, associated with autoimmune phenomena.
Three different morphologic patterns are described in AITL. The early lesion of AITL
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(Pattern I) usually shows preserved architecture with characteristic hyperplastic
follicles. The neoplastic proliferation is localized to the periphery of the follicles. In
Pattern II the nodal architecture is partially effaced with retention of few regressed
follicles. The subcapsular sinuses are preserved and even dilated. The paracortex
contains arborizing HEV and there is a proliferation of FDC beyond the B-cell follicle.
The neoplastic cells are small to medium in size, with minimal cytologic atypia. They
often have clear to pale cytoplasm, and may show distincT-cell membranes. A
polymorphous inflammatory background is usually evident.
Although AITL is a T-cell malignancy, there is a characteristic expansion of B-cells and
plasma cells, which likely reflects the function of the neoplastic cells as TFH cells. Both
EBV-positive and EBV-negative B-cells are present. Occasionally, the atypical B-cells
may resemble Hodgkin/Reed–Sternberg-like cells morphologically and
immunophenotypically, sometimes leading to a diagnostic confusion with that entity.
The B-cell proliferation in AITL may be extensive and some patients develop secondary
EBV-positive diffuse large B-cell lymphomas (DLBCL) or – more rarely – EBV-negative
B-cell tumors, often with plasmacytic differentiation.
The neoplastic CD4-positive T-cells of AITL show strong expression of CD10 and
CD279 (PD-1) and are positive for CXCL13. CXCL13 leads to an increased B-cell
recruitment to lymph nodes via adherence to the HEV, B-cell activation, plasmacytic
differentiation and expansion of the FDC meshworks, all contributing to the
morphologic and clinical features of AITL. Intense PDexpression in the perifollicular
tumor cells is particularly helpful in distinguishing AITL Pattern I from reactive follicular
and paracortical hyperplasia.
The follicular variant of PTCL-NOS is another entity with a TFH phenotype. In
contradistinction to AITL, it does not have prominent HEV or extra-follicular expansion
of FDC meshworks. The neoplastic cells may form intrafollicular aggregates, mimicking
B-cell follicular lymphoma, but also can have interfollicular growth pattern or involve
expanded mantle zones. Clinically, the follicular variant of PTCL-NOS is distinct from
AITL as patients more often present with early stage disease with partial lymph node
involvement and may lack the constitutional symptoms associated with AITL.
ANAPLASTIC LARGE CELL LYMPHOMA (ALCL)
ALCL may be subdivided as ALCL-‘anaplastic lymphoma kinase’ (ALK)+ or ALCL-
ALK-.
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ALCL-ALK+ is one of the best-defined entities within the peripheral T-cell lymphomas,
with characteristic “hallmark cells” bearing horseshoe-shaped nuclei and expressing
ALK and CD30. It accounts for about 7% of all peripheral T-cell and NK-cell lymphomas
and is most common in the first three decades of life. Patients often present with
lymphadenopathy, but the involvement of extranodal sites (skin, bone, soft tissues,
lung, liver) and B symptoms is common.
ALCL, ALK+ shows a wide morphologic spectrum, with 5 different patterns described,
but all variants contain some hallmark cells. Hallmark cells have eccentric horseshoe-
or kidney-shaped nuclei, and a prominent perinuclear eosinophilic Golgi region. The
tumour cells grow in a cohesive pattern with predilection for sinus involvement. Smaller
tumour cells predominate in the small cell variant, and in the lymphohistiocytic variant
abundant histiocytes mask the presence of tumour cells, many of which are small.
By definition, all cases show ALK and CD30 positivity, with expression usually weaker
in the smaller tumour cells. There is often loss of pan-T-cell markers, with 75% of cases
lacking surface expression of CD3.
ALK expression is a result of a characteristic recurrent genetic alteration consisting of
a rearrangement of ALK gene on chromosome 2p23 to one of the many partner genes,
resulting in an expression of chimeric protein. The most common partner gene,
occurring in 75% of cases, is Nucleophosmin (NPM1) on chromosome 5q35, resulting
in t(2;5)(p23;q35). The cellular distribution of ALK in different translocation variants
may vary depending on the partner gene.
ALCL-ALK− is included as a provisional category in the 2008 WHO classification. It is
defined as a CD30 positive T-cell lymphoma that is morphologically indistinguishable
from ALCL-ALK+ with a cohesive growth pattern and presence of hallmark cells, but
lacking ALK protein expression.
Patients are usually adults between the ages of 40 and 65, in contrast to ALCL-ALK+,
which is more common in children and young adults. ALCL-ALK− can involve both
lymph nodes and extranodal tissues, although the latter is seen less commonly than in
ALCL-ALK+. Most cases of ALCL-ALK− demonstrate effacement of lymph node
architecture by sheets of cohesive neoplastic cells with typical “hallmark” features. In
contrast to the ALCL-ALK+, the small cell morphologic variant is not recognized.
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Unlike its ALK+ counterpart, ALCL-ALK− shows a greater preservation of surface T-
cell marker expression, while the expression of cytotoxic markers and epithelial
membrane antigen (EMA) is less likely. Gene expression signatures and recurrent
chromosomal imbalances are different in ALCL-ALK− and ALCL-ALK+, confirming that
they are distinct entities at a molecular and genetic level.
ALCL-ALK− is clinically distinct from both ALCL-ALK+ and PTCL-NOS, with significant
differences in prognosis among these three different entities. The 5 year overall survival
of ALCL-ALK− is reported as 49% which is not as good as that of ALCL-ALK+ (at 70%),
but at the same time it is significantly better than that of PTCL- NOS (32%).
ENTEROPATHY-ASSOCIATED T-CELL LYMPHOMA (EATL)
EATL is an aggressive neoplasm which thought to be derived from the intraepithelial
T-cells of the intestine. Two morphologically, immunohistochemically and genetically
distinct types of EATL are recognized in the 2008 WHO classification: Type I
(representing the majority of EATL) and Type II (comprising 10–20% of cases).
Type I EATL is usually associated with overt or clinically silent gluten-sensitive
enteropathy, and is more often seen in patients of Northern European extraction due
to high prevalence of celiac disease in this population.
Most commonly, the lesions of EATL are found in the jejunum or ileum (90% of cases),
with rare presentations in duodenum, colon, stomach, or areas outside of the
gastrointestinal tract. The intestinal lesions are usually multifocal with mucosal
ulceration. Clinical course of EATL is aggressive with most patients dying of disease
or complications of disease within 1 year.
The cytological spectrum of EATL type I is broad, and some cases may contain
anaplastic cells. There is a polymorphous inflammatory background, which may
obscure the neoplastic component in some cases. The intestinal mucosa in regions
adjacent to the tumour often shows features of celiac disease with blunting of the villi
and increased numbers of intraepithelial lymphocytes (IEL), which may represent
lesional precursor cells.
By immunohistochemistry, the neoplastic cells are often
CD3+CD4−CD8−CD7+CD5−CD56−βF1+, and contain cytotoxic granule-associated
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proteins (TIA-1, granzyme B, perforin). CD30 is partially expressed in almost all cases.
CD103, which is a mucosal homing receptor, can be expressed in EATL.
Type II EATL, also referred to as monomorphic CD56+ intestinal T-cell lymphoma, is
defined as an intestinal tumour composed of small- to medium-sized monomorphic T-
cells that express both CD8 and CD56. There is often a lateral spread of tumour within
the mucosa, and absence of an inflammatory background. The majority of cases
express the γδ TCR, however there are cases associated with the αβ TCR.
Type II EATL has a more world-wide distribution than Type I EATL and is often seen in
Asians or Hispanic populations, in whom celiac disease is rare. In individuals of
European descent EATL, II represents about 20% of intestinal T-cell lymphomas, with
a history of celiac disease in at least a subset of cases. The clinical course is
aggressive.
HEPATOSPLENIC T-CELL LYMPHOMA (HSTL)
HSTL is an aggressive systemic neoplasm generally derived from γδ cytotoxic T-cells
of the innate immune system, however, it may also be derived from αβ T-cells in rare
cases. It is one of the rarest T-cell lymphomas, and typically affects adolescents and
young adults (median age, 35 years) with a strong male predominance.
EXTRANODAL NK/T-CELL LYMPHOMA NASAL TYPE
Extranodal NK/T-cell lymphoma, nasal type, is an aggressive disease, often with
destructive midline lesions and necrosis. Most cases are of NK-cell derivation, but
some cases are derived from cytotoxic T-cells. It is universally associated with Epstein-
Barr Virus (EBV).
CUTANEOUS T-CELL LYMPHOMA
The method of the present invention may also be used to treat cutaneous T-cell
lymphoma.
Cutaneous T-cell lymphoma (CTCL) is characterised by migration of malignant T-cells
to the skin, which causes various lesions to appear. These lesions change shape as
the disease progresses, typically beginning as what appears to be a rash and
eventually forming plaques and tumours before metastasizing to other parts of the
body.
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Cutaneous T-cell lymphomas include those mentioned in the following illustrative, non-
exhaustive list; mycosis fungoides, pagetoid reticulosis, Sézary syndrome,
granulomatous slack skin, lymphomatoid papulosis, pityriasis lichenoides chronica,
CD30+ cutaneous T-cell lymphoma, secondary cutaneous CD30+ large cell lymphoma,
non-mycosis fungoides CD30- cutaneous large T-cell lymphoma, pleomorphic T-cell
lymphoma, Lennert lymphoma, subcutaneous T-cell lymphoma and angiocentric
lymphoma.
The signs and symptoms of CTCL vary depending on the specific disease, of which the
two most common types are mycosis fungoides and Sézary syndrome. Classic
mycosis fungoides is divided into three stages:
Patch (atrophic or nonatrophic): Nonspecific dermatitis, patches on lower trunk and
buttocks; minimal/absent pruritus;
Plaque: Intensely pruritic plaques, lymphadenopathy; and
Tumor: Prone to ulceration
Sézary syndrome is defined by erythroderma and leukemia. Signs and symptoms
include edematous skin, lymphadenopathy, palmar and/or plantar hyperkeratosis,
alopecia, nail dystrophy, ectropion and hepatosplenomegaly.
Of all primary cutaneous lymphomas, 65% are of the T-cell type. The most common
immunophenotype is CD4 positive. There is no common pathophysiology for these
diseases, as the term cutaneous T-cell lymphoma encompasses a wide variety of
disorders.
The primary etiologic mechanisms for the development of cutaneous T-cell lymphoma
(ie, mycosis fungoides) have not been elucidated. Mycosis fungoides may be preceded
by a T-cell–mediated chronic inflammatory skin disease, which may occasionally
progress to a fatal lymphoma.
PRIMARY CUTANEOUS ALCL (C-ALCL)
C-ALCL is often indistinguishable from ALC-ALK− by morphology. It is defined as a
cutaneous tumour of large cells with anaplastic, pleomorphic or immunoblastic
morphology with more than 75% of cells expressing CD30. Together with
lymphomatoid papulosis (LyP), C-ALCL belongs to the spectrum of primary cutaneous
CD30-positive T-cell lymphoproliferative disorders, which as a group comprise the
second most common group of cutaneous T-cell lymphoproliferations after mycosis
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fungoides.
The immunohistochemical staining profile is quite similar to ALCL-ALK−, with a greater
proportion of cases staining positive for cytotoxic markers. At least 75% of the tumour
cells should be positive for CD30. CD15 may also be expressed, and when lymph
node involvement occurs, the differential with classical Hodgkin lymphoma can be
difficult. Rare cases of ALCL-ALK+ may present with localized cutaneous lesions, and
may resemble C-ALCL.
T-CELL ACUTE LYMPHOBLASTIC LEUKAEMIA
T-cell acute lymphoblastic leukaemia (T-ALL) accounts for about 15% and 25% of ALL
in paediatric and adult cohorts respectively. Patients usually have high white blood cell
counts and may present with organomegaly, particularly mediastinal enlargement and
CNS involvement.
The method of the present invention may be used to treat T-ALL which is associated
with a malignant T cell which expresses a TCR comprising a TRBC.
T-CELL PROLYMPHOCYTIC LEUKAEMIA
T-cell-prolymphocytic leukemia (T-PLL) is a mature T-cell leukaemia with aggressive
behaviour and predilection for blood, bone marrow, lymph nodes, liver, spleen, and skin
involvement. T-PLL primarily affects adults over the age of 30. Other names include
T-cell chronic lymphocytic leukaemia, "knobby" type of T-cell leukaemia, and T-
prolymphocytic leukaemia/T-cell lymphocytic leukaemia.
In the peripheral blood, T-PLL consists of medium-sized lymphocytes with single
nucleoli and basophilic cytoplasm with occasional blebs or projections. The nuclei are
usually round to oval in shape, with occasional patients having cells with a more
irregular nuclear outline that is similar to the cerebriform nuclear shape seen in Sézary
syndrome. A small cell variant comprises 20% of all T-PLL cases, and the Sézary cell-
like (cerebriform) variant is seen in 5% of cases.
T-PLL has the immunophenotype of a mature (post-thymic) T-lymphocyte, and the
neoplastic cells are typically positive for pan-T antigens CD2, CD3, and CD7 and
negative for TdT and CD1a. The immunophenotype CD4+/CD8- is present in 60% of
cases, the CD4+/CD8+ immunophenotype is present in 25%, and the CD4-/CD8+
immunophenotype is present in 15% of cases
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PHARMACEUTICAL COMPOSITION
The method of the present invention may comprise the step of administering the agent
in the form of a pharmaceutical composition.
The agent may be administered with a pharmaceutically acceptable carrier, diluent,
excipient or adjuvant. The choice of pharmaceutical carrier, excipient or diluent can be
selected with regard to the intended route of administration and standard
pharmaceutical practice. The pharmaceutical compositions may comprise as (or in
addition to) the carrier, excipient or diluent, any suitable binder(s), lubricant(s),
suspending agent(s), coating agent(s), solubilising agent(s), and other carrier agents.
ADMINISTRATION
The administration of the agent can be accomplished using any of a variety of routes
that make the active ingredient bioavailable. For example, the agent can be
administered by oral and parenteral routes, intraperitoneally, intravenously,
subcutaneously, transcutaneously, intramuscularly, via local delivery for example by
catheter or stent.
Typically, a physician will determine the actual dosage which will be most suitable for
an individual subject and it will vary with the age, weight and response of the particular
patient. The dosage is such that it is sufficient to reduce or deplete the number of clonal
T-cells expressing either TRBC1 or TRBC2.
USE
The present invention also provides an agent for use in treating a T-cell lymphoma
according to the method of the first aspect. The agent may be any agent as defined
above.
The present invention also relates to the use of an agent as defined above in the
manufacture of a medicament for the treatment of a T-cell lymphoma according to the
method of the first aspect.
The present invention further provides a kit comprising an agent as defined above for
use in the treatment of a T-cell lymphoma according to the method of the first aspect.
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The kit may also comprise a reagent(s) suitable for determining the TRBC of a
malignant T-cell. For example the kit may comprise PCR primers or an antibody
(antibodies) which are specific for either TRBC1 or TRBC2.
METHOD FOR DETERMINING T-CELL LYMPHOMA AND/OR LEUKAEMIA
The present invention further relates to a method for determining the presence of a T-
cell lymphoma or leukaemia in a subject which comprises the step of determining the
proportion of T-cells in a sample from a subject which are either TRBC1 or TRBC2
positive.
T-cell lymphomas involve the clonal expansion of individual malignant T-cells. As such
the presence of a T-cell lymphoma in a subject may be identified by determining the
proportion of either TRBC1 or TRBC2 T-cells in a sample derived from a patient.
The sample may be a peripheral blood sample, a lymph sample or a sample taken
directly from a tumour e.g. a biopsy sample.
The proportion of total T-cells which are TRBC1 or TRBC2 positive which indicates the
presence of a T-cell lymphoma or leukaemia may be, for example 80, 85, 90, 95, 98 or
99% of a total population of cells.
The method may involve determining infiltration by a distinct population of T-cells in a
biopsy or a sample. Herein, the presence of a T-cell lymphoma or leukaemia is
indicated where 80, 85, 90, 95, 98 or 99% of a total population of T cells in the sample
are either TRBC1 or TRBC2.
The total T-cells in a sample may identified by determining the number of cells in the
sample which express CD3, CD4, CD8 and/or CD45. A combination of these markers
may also be used.
The proportion of total T cells in a sample which express either TRBC1 or TRBC2 may
be determined using methods which are known in the art, for example flow cytometry,
immunohistochemistry or fluorescent microscopy.
The invention will now be further described by way of Examples, which are meant to
serve to assist one of ordinary skill in the art in carrying out the invention and are not
intended in any way to limit the scope of the invention.
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EXAMPLES
Example 1 - Discrimination of TRBC1 and TRBC2-expressing cells
The JOVI-1 antibody has been previously disclosed by Viney et al. (Hybridoma; 1992;
11(6); 701- 713) and is available commercially (Abcam, ab5465). The present
inventors determined that JOVI-1 is able to discriminate cells based on specific
expression of TRBC1 or TRBC2.
The inventors generated two plasmid vectors supplying the complete variable and
constant regions of the TCR, differing only in expression of either TRBC1 or TRBC2.
These plasmids were used to generate retroviral supernatant by transient transfection
of 293T-cells. This supernatant was used to stably transduce Jurkats TCR-knockout
T-cells (a T-ALL cell line with a mutation at the TCR beta chain locus precluding
expression of this chain, and thereby the entire surface TCR/CD3 complex). This
resulted in the production of cell lines which were identical other than expression of
either TRBC1 or TRBC2. Staining of these cell lines revealed full expression of the
surface TCR/CD3 complex, and that only cells expressing TRBC1 stained with the
JOVI-1 antibody (Figure 4).
Example 2 – Normal donor CD4+ and CD8+ T-cells contain separate TRBC1-
positive and TRBC1-negative populations
The inventors tested the JOVI-1 antibody on primary human T-cells of normal donors.
These analyses revealed that all donors had a proportion of both CD4+ and CD8+ T
cells which expressed TRBC1 and a proportion of each which did not. Approximately
-50% of normal CD4+ and CD8+ T-cells are TRBC1 +ve (Figures 6 and 7).
Example 3 – Clonal T-cell lines expressing TCR are TRBC1 positive or negative
Cell lines are derived from an original clonal tumour population in a patient. Staining
of T-cell lines expressing TCR reveals that T-cells express either TRBC1 or TRBC2,
confirming this as a marker of clonality. Of three T-cell lines tested, Jurkats cells (known
to be TRBC1+) and not HPB-ALL or HD-Mar-2 (known to be TRBC2+) cells stain with
JOVI-1, supporting exclusive expression of either TRBC1 or 2 (Figure 8).
Example 4 – Primary clonal T-cell in patients with T-prolymphocyctic leukaemia
are TRBC1 positive or negative
Clonal T-cells extracted from peripheral blood of patients with T-prolymphocyctic
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leukaemia (T-PLL) are either uniformly TRBC1 positive or TRBC1 negative.
Example 5-The effect of mutation of the residues that are unique to TCBC1
Plasmid vectors, coding for TCRs which are identical, except for hybrid TRBC1/2
mutations in the TCR chain constant region, were generated. Analysis showed that
JOVI-1 recognizes differences in residues at positions 3 and 4 of TCR constant chain
indicating that these residues are accessible to antibody recognition and are likely the
best targets to generate agents discriminating TRBC1 from TRBC2 or TRBC2 from
TRBC1 (Figure 5).
Example 6 – Specific Lysis of TRBC1 but not TRBC2 TCR expressing T-cells.
Wild-type Jurkat T-cells (CD34-, TRBC1+) were mixed with TCRαβ knock-out Jurkat T-
cells transduced with TRBC2 co-expressed with the CD34 marker gene
(CD34+TRBC2+). These cells were incubated with JOVI-1 alone or incubated with
JOVI-1 and complement for 1 hour. Cells were washed and stained for CD34, Annexin
V and 7-AAD. Cells were analysed by flow-cytometry.
CD34 expression in the live population as defined by Annexin-V negative and 71AAD
dim population is shown in Figure 9. Selective killing of TRBC1 T-cells (CD34-) was
observed (Figure 9).
Wild-type Jurkat T-cells are naturally TRBC1+ and do not express the truncated CD34
marker gene. As described above the inventors derived a TRBC2+ Jurkat line by
transducing TCRαβ knock-out Jurkat T-cells with a retroviral vector which codes for a
TRBC2 TCR as well as the truncated CD34 marker gene. These T-cells were then
mixed together. Next, the inventors incubated the T cells with either JOVI-1 alone or
with JOVI-1 and complement for 1 hour. Conveniently, the inventors could discriminate
TRBC1 and 2 populations by staining for the CD34 marker gene and thus avoided
failing to detect TRBC1 TCRs due to TCR internalization after prolonged exposure to
anti-TCR mAb. Cells were washed and stained for CD34, Annexin V and 7-AAD. The
cells were analysed by flow-cytometry. By gating on live cells (i.e. cells which were
Annexin V negative and 7-AAD dim), the inventors could determine that TRBC1 T-cells
were selectively killed by JOVI-1 in the presence of complement (Figure 9).
Example 7 - Polyclonal Epstein Barr Virus (EBV) specific T-cells can be split into
two approximately equal TRBC1/2 populations.
Peripheral blood T-cells were drawn from a normal blood donor. Mononuclear cells
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were isolated and most of the cells were cryopreserved. A small number of cells were
infected with a laboratory strain of EBV (B95-8). Over some weeks, an immortalized
EBV infected cell line, known as a lymphoblastoid cell line (LCL) emerged. Such a cell
line is known to present a large collection of different EBV antigens. The previously
cryopreserved mononuclear cells were thawed and repeatedly stimulated with this LCL
line weekly for 4 weeks in the presence of IL2. This process selectively expands EBV
specific T-cells from the peripheral blood mononuclear population. It is also known that
such a process results in a polyclonal line where >90% of the T-cells are EBV specific
and represents the donor’s EBV immune system. The specificity of this line is checked
by showing a high degree of killing of autologous LCLs but not allogeneic LCLs or K562
cells (Figure 10a). This cell line was then stained with JOVI-1 and shown to contain an
approximately equal mixture of TRBC1 and TRBC2 T-cells (Figure 10b).
Thus, if a therapeutic agent was administered which depleted either the TRBC1 or
TRBC2 compartment, an adequate EBV immunity would remain. Since EBV immunity
is regarded as a model system for an immune response it is reasonable to postulate
that immunity to other pathogens would be equally conserved.
Example 8 - JOV1 staining of a circulating peripheral T-cell lymphoma.
The hypothesis was that T-cell lymphomas, being clonal, would express either TRB1
or TRBC2 T-cell receptors, while normal T-cells being polyclonal would comprise of a
population of T-cells which are a mixture of those that have TRBC1 or TRBC2. To
demonstrate this, a blood sample of a T-cell lymphoma from a patient whose lymphoma
was circulating in peripheral blood was obtained. Peripheral blood mononuclear cells
were isolated and stained with a panel of antibodies which included CD5 and JOVI1.
The total T-cell population (which contains both lymphoma and normal T-cells) was first
identified. This population was comprised of T-cells with normal (bright) CD5
expression and T-cells with intermediate/dim CD5 expression. The former represent
normal T-cells, while the latter represent the lymphoma. JOVI-1 binding was
investigated next and the results are shown in Figure 12.
The CD5 intermediate and dim populations (the tumour) were all TRBC2 positive.
Example 9 - Elucidation of the VH/VL sequences of JOVI-1
Using 5’ RACE with primers which anneal to the constant regions of mouse IgG CH1
and the constant region of mouse kappa, we isolated a single functional VH sequence
and a single functional VL sequence from the hybridoma JOVI-1. Sequences of the VH
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and VL are SEQ ID 1 and 2 respectively (see above). An annotated sequence of VH
and VL is shown in Figure 11.
These VH and VL sequences were cloned back in frame with mouse IgG heavy chain
and kappa light chain respectively. In addition, the VH and VL were fused to form a
single-chain variable fragment (scFv), this was fused to the hinge-CH2-CH3 region of
mouse IgG2a to create a scFv-Fv. The amino acid sequence of the scFv is given in
the Detailed Description as SEQ ID No. 3. Recombinant antibody and recombinant
scFv-Fc were generated by transfection into 293T cells. Along with JOVI-1 from the
hybridoma, the following cells were stained: Jurkats with TCR knocked out; wild-type
Jurkats; Jurkat TCR knock out transduced with TRBC1 co-expressed with eBFP2 and
Jurkat TCR knock-out transduced with TRBC2 co-expressed with eBFP2. Both
recombinant antibody and scFv-Fc derived from JOVI bound TRBC2 confirming that
we had identified the correct VH/VL, and that JOVI-1 VH/VL can fold as a scFv. This
binding data is shown in Figure 13.
Example 10 - Function of JOVI-1 based CAR
The JOVI-1 scFv was cloned into CAR formats. To elucidate which spacer length would
result in the optimal JOVI-1 based CAR, 3 generation CARs were generated with
either a human Fc spacer, a human CD8 stalk spacer or with a spacer derived from an
IgG1 hinge (Figure 4). Primary human T-cells from normal donors were transduced
with these CARs and killing of Jurkats and Jurkats with TCR knocked-out were
compared. CARs with JOVI-1 scFvs which had either an IgG1 hinge spacer or a CD8
stalk spacer killed Jurkats, but not Jurkats with TCR knockout (Figure 5), demonstrating
the expected specificity. Since the normal donor T-cells transduced with the CARs
should have a mixture of TRB1/2 T-cells, it was expected that the cultures would “self-
purge”. Indeed, this was observed. JOVI-1 staining of the CAR T-cell cultures which
become 100% TRBC2 negative in shown in Figure 6.
MATERIALS & METHODS
DEMONSTRATION OF SPECIFICITY OF JOVI-1
A tri-cistronic retroviral cassette was generated which coded for a well characterized
human TCR as well as a convenient marker gene. The coding sequences for the TCR
and chains were generated using de-novo gene synthesis from overlapping
oligonucleotides. These chains were connected in frame to a foot-and-mouth disease
2A peptide to allow co-expression. The truncated CD34 marker gene was cloned from
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cDNA by PCR and co-expressed with the TCR chains using an internal ribosome entry
sequence (IRES). This cassette was introduced into a retroviral vector. Variants of this
construct were generated by splice by over-lap PCR with primers which introduced the
desired mutations. The veracity of the constructs was confirmed by Sanger
sequencing. The Jurkat 76 line is a well characterized derivate of the Jurkat T-cell line
which has both TCR and chains knocked out. This Jurkat line was transduced with
the above retroviral vectors using standard techniques.
STAINING AND ANALYSIS OF JURKATS, PERIPHERAL BLOOD T-CELLS AND
CELL LINES
Jurkats were obtained from ECACC and engineered as detailed above. Other T-cell
lines were also obtained from ECACC. Peripheral blood was drawn by venopunture
from normal donors. Blood was ficolled to isolate mononuclear cells. Cells were stained
with JOVI-1 as well as commercially available monoclonal antibodes which recognize
all TCRs and CD3. In the case of engineered T-cells, cells were stained with antibodies
which recognize CD34. In case of peripheral blood mononuclear cells, cells were
stained with antibodies which recognize CD4 and CD8. The antibodies were purchased
conjugated with suitable fluorophores so that independent fluorescent signals could be
obtained while analyzing the cells with a flow-cytometer.
DEMONSTRATION OF SPECIFIC LYSIS OF TRBC1 T-CELLS
Wild-type Jurkat T-cells (TRBC1 – TCR), and Jurkat T-cells TCR KO with TRBC2 TCR
introduced were mixed together at a ratio of 1:1. This mixture of Jurkats was then
incubated with JOVI-1 monoclonal antibody at 1ug/ml in the absence or presence of
complement. Four hours later, cells were stained with Annexin-V and 7AAD and CD34.
Conveniently, the marker gene CD34 can distinguish between wild-type (TRBC1) and
transgenic (TRBC2) Jurkats. Cell populations were analysed by flow-cytometry. Live
cells were selectively studied by gating on flow cytometric events which are negative
for Annexin-V and dim for 7AAD. In this way, the survival of transgenic (TRBC2) vs
wild-type (TRBC1) T-cells was studied.
Example 11 – Investigating the clonality of T-cell lymphoproliferative disorders
Four patients: three with T-cell large granular lymphocyte lymphoproliferative disorder
(T-LGL); and one with peripheral T-cell lymphoma (PCTL) were tested to confirm that
malignant cells were uniformly either TRBC1 positive or negative.
Whole blood or bone marrow was collected from patients with T-lymphoproliferative
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orders. Peripheral blood mononuclear cells (PBMCs) were obtained by Ficoll gradient
centrifugation. Freshly obtained PBMCs were pelleted and stained for 20 minutes with
appropriate pre-conjugated antibodies. The cells were then washed and resuspended
in phosphate buffered saline for immediate flow cytometric analysis on BD LSR
Fortessa II. Live lymphocytes were identified by FSc/SSc properties and failure to
uptake a dead cell discriminating dye. T-cells were identified by staining with anti-TCR
alpha/beta antibody. Tumour and normal T-cell populations were identified using
appropriate cell surface stains for each sample, based upon immunophenotype
previously identified by clinical laboratory analysis.
The results are shown in Figures 18 to 21.
In patient A (T-LGL, Figure 18), normal T-cells were CD7bright and contained mixed
CD4/CD8 cells, and a mixed population of TRBC1 or TRBC1- cells. In contrast,
malignant cells were CD7- or CD7dim, were uniformly CD8+CD4-, and were uniformly
TRBC1-.
In patient B (T-LGL, Figure 19), malignant cells were identified by CD4-, CD8+, CD7+
CD57+ and were clonally TRBC1- (highlighted panel). Normal CD4+CD8- and CD4-
CD8+ T-cells contained TRBC1+ and TRBC1- populations.
In patient C (T-LGL, Figure 20), normal CD4+ and CD8+ T- cells populations were 30-
40% TRBC1+. Malignant cells were identified by CD4-, CD8+, CD7+ CD57+ and were
clonally TRBC1+ (highlighted panel, note 84% of cells are TRBC1 – remaining 16%
likely to be contaminating ‘normal’ T-cells). Normal CD4+CD8- and CD4-CD8+ T-cells
contained TRBC1+ and TRBC1- populations.
In patient D (PTCL-NOS, Figure 21), malignant cells in the bone marrow, identified on
the basis of FSChigh CD5dim CD4dim, were uniformly TRBC1+, whereas CD4+CD8-
and CD4-CD8+ T-cells contained both TRBC1+ and TRBC1- populations.
Example 12 - Generation of monoclonal human antibodies which distinguish
between the two isoforms of the T-cell receptor β chain constant domain using
phage display
In order to generate antibodies which distinguished between TRBC2 and TRBC1
peptide fragments covering the region of difference between the two TRBC isoforms
were synthesised. Of the four amino acid differences between TRBC2 and TRBC1, two
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are found at the beginning of the constant domains. Peptides (see below) representing
these regions were synthesised and used for antibody generation.
TRBC2 VLEDLKNVFPPEVAV (SEQ ID No. 36)
TRBC1 VLEDLNKVFPPEVAV (SEQ ID No. 37)
These peptides were prepared in biotinylated, non-biotinylated and cysteine modified
forms (by addition of a C terminal cysteine). The cysteine modified forms of TRBC1
and TRBC2 were subsequently conjugated to modified bovine serum albumin (Imm-
Link BSA, Innova 462-001) or ovalbumin (Imm-Link Ovalbumin, Innova 461-001)
according to manufacturers recommended conditions.
Results
Antibody phage display selections
A human phage display library was constructed and phage selections carried out as
described in as described in (Schofield et al., 2007 Genome Biol 8, R254). In order to
identify TRBC1 and TRBC2 specific antibodies from the antibody library, multiple
rounds of phage display selections were carried out. Two phage selection strategies
were used in parallel to maximise the chance of generating a large panel of specific
binders. These strategies are known as solid phase and solution phase selections
(Figure 21). In solid phase selections, phage antibodies are allowed to bind to the target
antigen immobilised on a solid surface (Schofield et al., 2007, as above). In solution
phase selections, phage antibodies binds to the biotinylated antigen in solution and the
phage antibody-antigen complex is then captured by streptavidin or neutravidin coated
paramagnetic beads. Within the solid phase selection strategy, two different
immobilisation or antigen presentation approaches were employed. Using the first
approach, TRBC peptides conjugated to bovine serum albumin (BSA) or ovalbumin
(OA) were immobilised on Maxisorp™ immunotubes via direct adsorption. Using the
second approach, biotinylated TRBC peptides were immobilised indirectly on
Maxisorp™ immunotubes tubes that were pre-coated with streptavidin or neutravidin.
In order to select antibodies that are specific to the desired peptide, all selections were
carried out in presence of an excess of the opposing peptide. For example, all TRBC1
selections were carried out in the presence of a 10-fold molar excess of non-
biotinylated TRBC2. This method is known as ‘deselection’ and it was expected to
deplete antibodies that recognise shared epitopes on both TRBC peptides as these
preferentially bind to the excess TRBC2 in solution. In order to avoid enriching for
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antibody clones that bind to the carrier protein (BSA or OA) or the immobilisation
partner (streptavidin or neutravidin from Thermo fisher scientific) two strategies were
employed in combination.
The first strategy was to switch the conjugation or immobilisation partner between
rounds of selection. For directly immobilised peptides the first round of selections were
carried out on BSA-peptide and for round-2 OA-peptide conjugate was used. Similarly,
biotinylated TRBC peptides were immobilised on streptavidin for the round-1 and
neutravidin was used for immobilisation in round-2.
The second strategy was to deplete the phage library of any binders to the
conjugation/immobilisation partner by performing a ‘deselection’ in round-1. For directly
immobilised peptides, ‘deselection was performed by carrying out the phage-peptide
binding step in the presence of 10-fold molar excess of free BSA in solution. In the case
of biotinylated peptides immobilised on streptavidin, the phage library was pre-
incubated with streptavidin coated paramagnetic beads. The beads were removed prior
to the addition of the phage to antigen tubes thereby limiting the entry streptavidin
binders into the selection. The different selection conditions used are summarised in
figure 21. See Table 3 for detailed information on selection conditions.
Polyclonal phage prepared from round-2 selection output was tested in ELISA using
various presentations of the peptides or the support proteins. This included TRBC
peptides directly immobilised as either BSA or OA conjugates or biotinylated peptides
indirectly immobilised on streptavidin or neutravidin. Control proteins included were
streptavidin, neutravidin, BSA and an irrelevant antigen. Phage binding was detected
using a mouse anti-M13 antibody (GE healthcare) followed by an anti-mouse Fc
antibody labelled with Europium (Perkin Elmers) using time resolved fluorescence
(Figure 22). This result demonstrated the preferential binding of polyclonal phage
populations to the respective TRBC peptide (as compared to the opposing TRBC
peptide). For example, polyclonal phage prepared from TRBC1 selections showed
significantly higher binding signal to TRBC1 than TRBC2 and vice versa. There was
limited or no binding to the immobilisation or conjugation partners and the irrelevant
antigen.
Single chain antibody (scFv) sub-cloning and monoclonal screening
The scFv populations from round-2 and round-3 selection outputs were sub-cloned into
the pSANG10-3F expression vector and transformed into E.coli BL21 (DE3) cells..
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1128 individual transformants (564 clones/TRBC peptide) were picked into 12 x 96 well
culture plates (94 clones/plate) and antibody expression was induced using
autoinduction media.. Recombinant monoclonal antibodies secreted into culture
supernatant after overnight induction were tested for binding to biotinylated TRBC1 and
TRBC2 immobilised on neutravidin coated Nunc Maxisorp™ 96 well plates. Out of the
564 clones screened from the TRBC1 selections, 255 clones were found to be specific
for TRBC1 (>10000 TRF units for TRBC1 and <1000 TRF units for TRBC2). 138
TRBC2 specific binders (>10000 TRF units for TRBC2 and <2000 TRF units for
TRBC1) were identified from the 564 clones screened from the TRBC2 selections.
Figure 24 shows a representative binding profile from a single 96 well plate arising from
selection on either TRBC1 (fig 24A) or TRBC2 (figure 24B). The details of specific
binders generated using different selection conditions is summarised in Table 5.
142 and 138 specific binders were picked from the TRBC1 and TRBC2 selections
respectively for sequence analysis and further characterisation. Sequences of cherry-
picked clones were generated by Sanger sequencing using BigDye® terminator v3.1
cycle sequencing kit (Life technologies). DNA sequences were analysed to determine
protein sequence and the CDRs of the VH and VL domains were identified. Analysis of
the VH and VL CDR3 regions identified 74 unique TRBC1 and 42 unique TRBC2 clones
(where unique is defined as any combination of VH CDR3 and VL CDR3 sequence).
The TRBC1-specific clones and their VH CDR3 and VL CDR3 sequences are
summarised in Table 1 above. The TRBC2-specific clones and their VH CDR3 and VL
CDR3 sequences are summarised in Table 2 above.
Table 3A. Details of solid phase TRBC selections
Solid phase selections
Round 1 Round 2
Selection Antigen Immobilisatio deselection deselection
antigen No. of rounds concentration n antigens antigens
BSA TRBC1
(Round 1),
OA TRBC1 BSA (100 μg/ml), TRBC2 (30
(Round 2) 2 10 μg/ml Direct TRBC2 (30 μM) μM)
BSA TRBC2
(Round 1),
OA TRBC2 BSA (100 μg/ml), TRBC1 (30
(Round 2) 2 10 μg/ml Direct TRBC1 (30 μM) μM)
P104381PCT
Streptavidin Neutravidin
beads (Round Streptavidin beads,
Bio-TRBC1 1), Neutravidin beads, TRBC2 TRBC2
(Round 1&2) 2 3 μg/ml (Round 2) (30μg/ml) (30μg/ml)
Streptavidin Neutravidin
beads (Round Streptavidin beads,
Bio-TRBC2 1), Neutravidin beads, TRBC1 TRBC1
(Round 1&2) 2 3 μg/ml (Round 2) (30μg/ml) (30μg/ml)
Table 3B. Details of solution phase TRBC selections
Solution phase selections
Round 1 Round 2 Round 3
Selection No. of Antigen deselection deselection deselection
antigen rounds concentration antigens antigens antigens
Bio-TRBC1 Streptavidin Streptavidin Neutravidin
(Round beads, TRBC2 beads, TRBC2 beads, TRBC2
1,2&3) 3 500 nM (5 μM) (5 μM) (5 μM)
Bio-TRBC2 Streptavidin Streptavidin Neutravidin
(Round beads, TRBC1 beads, TRBC1 beads, TRBC1
1,2&3) 3 500 nM (5 μM) (5 μM) (5 μM)
Table 4: Selection output numbers
No. of No. of
plaque plaque
No. of plaque forming forming
No. of forming units units units
Selection type rounds Antigen (Round 1) (Round 2) (Round 3)
BSA/OA
Solid phase 2 TRBC1 1.0 x 10 6.0 x 10 N.D
BSA/OA
Solid phase 2 TRBC2 1.5 x 10 2.2 x 10 N.D
Solid phase 2 Bio-TRBC1 5.0 x 10 2.0 x 10 N.D
Solid phase 2 Bio-TRBC2 3.0 x 10 1.0 x 10 N.D
P104381PCT
6 8 8
Solution phase 3 Bio-TRBC1 1.5 x 10 >10 >10
8 8
Solution phase 3 Bio-TRBC2 2.7 x 10 >10 >10
Table 5: Details of monoclonal screening
Selectio Selectio No. of No. of
n n Selection clones specific
number Selection type antigen output screened binders
Solid-phase, indirect
262 immobilisation TRBC1 Round-2 186 93
Solid-phase, indirect
263 immobilisation TRBC2 Round-2 186 68
264 Solution-phase TRBC1 Round-2 186 83
265 Solution-phase TRBC2 Round-2 186 29
266 Solution-phase TRBC1 Round-3 94 47
267 Solution-phase TRBC2 Round-3 94 33
Solid-phase, direct
immobilisation
268 (BSA/OA) TRBC1 Round-2 94 32
Solid-phase, direct
immobilisation
269 (BSA/OA) TRBC2 Round-2 94 9
Example 13 – TRBC polyclonal antibody production via peptide immunisation of
rabbits
In order to generate antibodies which distinguish between TRBC2 and TRBC1, 2
peptides that cover the principle area of differentiation between the two TRBC isoforms
were synthesized and used for the immunization of rabbits. The following peptide
sequences were used:
TRBC1: VLEDLNKVFPPEVAVC (SEQ ID No. 38)
TRBC2: VLEDLKNVFPPEVAVC (SEQ ID No. 39).
mg of TRBC1 and TRBC2 peptides were synthesized. Keyhole Lympet Hemocyanin
was conjugated to TRBC1 and TRBC2 peptides via C terminal cysteines present on
P104381PCT
the peptides. For each peptide 2 New England rabbits were immunized a total of three
times with KLH conjugated TRBC1 or TRBC2 peptide. After the third immunization
rabbits were sacrificed and bled, and the serum collected for purification. The crude
serum obtained from the rabbits were passed through a crosslinked beaded agarose
resin column coupled with the peptide used for immunization to collect antibodies
specific for the common segments and the TRBC isoform specific epitope of the
peptide. The initially purified supernatant was then purified further through a column
with the alternative peptide immobilized, to remove the antibodies specific to common
segments of the peptide.
ELISA Setup
Coating Antigen(s): A :peptide TRBC1
B :peptide TRBC2
Coating Concentration: 4ug/ml, 100 μl/well
Coating Buffer: Phosphate Buffered Saline, pH7.4
Secondary Antibody: Anti-RABBIT IgG (H&L) (GOAT) Antibody Peroxidase
Conjugated
The results are shown in Figures 25 and 26. It is possible to make polyclonal serum
comprising TRBC1 or TRBC2-specific antibodies by this method.
Claims (15)
1. A bispecific T-cell engager which comprises: a) a first domain which selectively binds one of TRBC1 or TRBC2, and b) a second domain capable of activating a T cell.
2. The bispecific T-cell engager according to claim 1, wherein the first and the second domains are single-chain variable fragments (scFvs).
3. The bispecific T-cell engager according to any of claims 1 or 2, wherein the first domain selectively binds TRBC1.
4. The bispecific T-cell engager according to claim 3, wherein the first domain has a variable heavy chain (VH) and a variable light chain (VL) which comprise the following complementarity determining regions (CDRs): VH CDR1: SEQ ID No. 7; VH CDR2: SEQ ID No. 8; VH CDR3: SEQ ID No. 9; VL CDR1: SEQ ID No. 10; VL CDR2: SEQ ID No. 11; and VL CDR3: SEQ ID No. 12.
5. The bispecific T-cell engager according to claim 3, wherein the first domain comprises a variable heavy chain (VH) having the sequence shown as SEQ ID No. 1 and a variable light chain (VL) having the sequence shown as SEQ ID No. 2.
6. The bispecific T-cell engager according to claim 3, wherein the first domain comprises a scFv having the sequence shown as SEQ ID No. 3.
7. The bispecific T-cell engager according to any of claims 1 or 2, wherein the first domain selectively binds TRBC2.
8. A nucleic acid which encodes the bispecific T-cell engager according to any of claims 1 to 7.
9. A vector which comprises the nucleic acid according to claim 8.
10. The bispecific T-cell engager according to any of claims 1 to 7 for use in a method for treating a T-cell lymphoma or leukaemia in a subject which comprises the step of administrating the bispecific T-cell engager to the subject, to cause selective depletion of the malignant T-cells, together with normal T-cells expressing the same TRBC as the malignant T-cells, but not to cause depletion of normal T-cells expressing the TRBC not expressed by the malignant T-cells.
11. The bispecific T-cell engager for use according to claim 10, wherein the method also comprises the step of investigating the TCR beta constant region (TRBC) of a malignant T cell from the subject to determine whether it expresses TRBC1 or TRBC2.
12. The bispecific T-cell engager for use according to any of claims 10 or 11, wherein the T-cell lymphoma or leukaemia is selected from peripheral T-cell lymphoma, not otherwise specified (PTCL-NOS); angio-immunoblastic T-cell lymphoma (AITL), anaplastic large cell lymphoma (ALCL), enteropathy-associated T-cell lymphoma (EATL), hepatosplenic T-cell lymphoma (HSTL), extranodal NK/T-cell lymphoma nasal type, cutaneous T-cell lymphoma,primary cutaneous ALCL, T cell prolymphocytic leukaemia and T-cell acute lymphoblastic leukaemia.
13. A pharmaceutical composition which comprises a bispecific T-cell engager according to any of claims 1 to 7 and a pharmaceutically acceptable carrier, diluent, excipient or adjuvant.
14. A method for selecting a suitable therapy to treat a subject suffering from T-cell lymphoma or leukaemia which comprises: i) determining whether a malignant T cell in a sample isolated from the subject expresses the same TRBC1 or TRBC2; and ii) selecting the bispecific T-cell engager for use according to any of claims 10 to 12 based on the TRBC1 or TRBC2 expression of said malignant T cell.
15. A method for selecting a subject suffering from T-cell lymphoma or leukaemia to receive a therapy based on a bispecific T-cell engager for use according to any of claims 10 to 12, which comprises: i) determining whether a malignant T cell in a sample isolated from the subject expresses the same TRBC1 or TRBC2; and ii) selecting said subject to receive a therapy based on the bispecific T-cell engager for use according to any of claims 10 to 12 based on the TRBC1 or TRBC2 expression of said malignant T cell.
Applications Claiming Priority (5)
Application Number | Priority Date | Filing Date | Title |
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GB1403905.1 | 2014-03-05 | ||
GB201403905A GB201403905D0 (en) | 2014-03-05 | 2014-03-05 | Method |
GB201416908A GB201416908D0 (en) | 2014-09-25 | 2014-09-25 | Method |
GB1416908.0 | 2014-09-25 | ||
NZ723307A NZ723307B2 (en) | 2014-03-05 | 2015-03-05 | Chimeric antigen receptor (car) with antigen binding domains to the t cell receptor beta constant region |
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NZ761848A NZ761848A (en) | 2021-06-25 |
NZ761848B2 true NZ761848B2 (en) | 2021-09-28 |
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