Lubec et al., 2007 - Google Patents
Limitations and pitfalls in protein identification by mass spectrometryLubec et al., 2007
- Document ID
- 3241201579714751485
- Author
- Lubec G
- Afjehi-Sadat L
- Publication year
- Publication venue
- Chemical reviews
External Links
Snippet
The advent of proteomics techniques for protein identification (PrI) represented a major step forward in protein chemistry, 1, 2 and indeed, a legion of laboratories are now using different methods of mass spectrometry for peptide identification (PI). Many thousands of proteomics …
- 102000004169 proteins and genes 0 title abstract description 406
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
- G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6848—Methods of protein analysis involving mass spectrometry
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
- G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6842—Proteomic analysis of subsets of protein mixtures with reduced complexity, e.g. membrane proteins, phosphoproteins, organelle proteins
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electro-chemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electro-chemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING; COUNTING
- G06F—ELECTRICAL DIGITAL DATA PROCESSING
- G06F19/00—Digital computing or data processing equipment or methods, specially adapted for specific applications
- G06F19/10—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
- G06F19/22—Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Lubec et al. | Limitations and pitfalls in protein identification by mass spectrometry | |
Searle et al. | High-throughput identification of proteins and unanticipated sequence modifications using a mass-based alignment algorithm for MS/MS de novo sequencing results | |
Burke et al. | The hybrid search: a mass spectral library search method for discovery of modifications in proteomics | |
Hughes et al. | De novo sequencing methods in proteomics | |
Craig et al. | Using annotated peptide mass spectrum libraries for protein identification | |
Verrastro et al. | Mass spectrometry-based methods for identifying oxidized proteins in disease: advances and challenges | |
Bern et al. | Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry | |
Suckau et al. | T3-sequencing: targeted characterization of the N-and C-termini of undigested proteins by mass spectrometry | |
Kelleher et al. | Top down versus bottom up protein characterization by tandem high-resolution mass spectrometry | |
Liu et al. | Accurate mass measurements in proteomics | |
Garcia | What does the future hold for top down mass spectrometry? | |
Qin et al. | A strategy for rapid, high-confidence protein identification | |
Sun et al. | pTop 1.0: a high-accuracy and high-efficiency search engine for intact protein identification | |
Lantz et al. | ClipsMS: an algorithm for analyzing internal fragments resulting from top-down mass spectrometry | |
Li et al. | High-throughput peptide identification from protein digests using data-dependent multiplexed tandem FTICR mass spectrometry coupled with capillary liquid chromatography | |
Chalkley et al. | Statistical analysis of peptide electron transfer dissociation fragmentation mass spectrometry | |
Falkner et al. | A spectral clustering approach to MS/MS identification of post-translational modifications | |
Na et al. | Software eyes for protein post‐translational modifications | |
Tang et al. | Discovering known and unanticipated protein modifications using MS/MS database searching | |
Liu et al. | Identification of ultramodified proteins using top-down tandem mass spectra | |
Easterling et al. | Monitoring protein expression in whole bacterial cells with MALDI time-of-flight mass spectrometry | |
Rose et al. | Neutron encoded labeling for peptide identification | |
Melani et al. | It is time for top-down venomics | |
Yang et al. | Open-pNovo: de novo peptide sequencing with thousands of protein modifications | |
Lu et al. | Algorithms for de novo peptide sequencing using tandem mass spectrometry |