Strader et al., 2013 - Google Patents
A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12Strader et al., 2013
View HTML- Document ID
- 8274837868393351929
- Author
- Strader M
- Hervey IV W
- Costantino N
- Fujigaki S
- Chen C
- Akal-Strader A
- Ihunnah C
- Makusky A
- Court D
- Markey S
- Kowalak J
- Publication year
- Publication venue
- Journal of proteome research
External Links
Snippet
The bacterial ribosomal protein S12 contains a universally conserved D88 residue on a loop region thought to be critically involved in translation due to its proximal location to the A site of the 30S subunit. While D88 mutants are lethal this residue has been found to be post …
- 102000004169 proteins and genes 0 title abstract description 321
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
- G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6842—Proteomic analysis of subsets of protein mixtures with reduced complexity, e.g. membrane proteins, phosphoproteins, organelle proteins
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
- G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/5005—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells
- G01N33/5008—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics
- G01N33/502—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving human or animal cells for testing or evaluating the effect of chemical or biological compounds, e.g. drugs, cosmetics for testing non-proliferative effects
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by the preceding groups
- G01N33/48—Investigating or analysing materials by specific methods not covered by the preceding groups biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay
- G01N33/5308—Immunoassay; Biospecific binding assay for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Shchepachev et al. | Defining the RNA interactome by total RNA‐associated protein purification | |
Matsuo et al. | Ubiquitination of stalled ribosome triggers ribosome-associated quality control | |
Dephoure et al. | Mapping and analysis of phosphorylation sites: a quick guide for cell biologists | |
Kramer et al. | Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins | |
Catherman et al. | Top down proteomics of human membrane proteins from enriched mitochondrial fractions | |
Matic et al. | Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif | |
Poulsen et al. | Using guanidine-hydrochloride for fast and efficient protein digestion and single-step affinity-purification mass spectrometry | |
Singh et al. | Characterization of protein cross-links via mass spectrometry and an open-modification search strategy | |
Rogawski et al. | Characterizing endogenous protein complexes with biological mass spectrometry | |
Cassidy et al. | Combination of bottom-up 2D-LC-MS and semi-top-down GelFree-LC-MS enhances coverage of proteome and low molecular weight short open reading frame encoded peptides of the archaeon Methanosarcina mazei | |
Jiang et al. | Identification of novel Escherichia coli ribosome-associated proteins using isobaric tags and multidimensional protein identification techniques | |
Yang et al. | Genetically encoded photocrosslinkers for identifying and mapping protein‐protein interactions in living cells | |
Hildebrandt et al. | The RNA-binding ubiquitin ligase MKRN1 functions in ribosome-associated quality control of poly (A) translation | |
Pulk et al. | Ribosome reactivation by replacement of damaged proteins | |
US9612246B2 (en) | Real-time analysis for cross-linked peptides | |
El Qaidi et al. | An intra-bacterial activity for a T3SS effector | |
Ho et al. | Efficient reassignment of a frequent serine codon in wild-type Escherichia coli | |
Strader et al. | A coordinated proteomic approach for identifying proteins that interact with the E. coli ribosomal protein S12 | |
Daniels et al. | Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics | |
Chodavarapu et al. | Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication | |
Yagoub et al. | Proteogenomic discovery of a small, novel protein in yeast reveals a strategy for the detection of unannotated short open reading frames | |
Strader et al. | A proteomic and transcriptomic approach reveals new insight into β-methylthiolation of Escherichia coli ribosomal protein S12 | |
Golghalyani et al. | ArgC-like digestion: Complementary or alternative to tryptic digestion? | |
Young et al. | His-tagged peptidiscs enable affinity purification of the membrane proteome for downstream mass spectrometry analysis | |
Emery-Corbin et al. | Eukaryote-conserved methylarginine is absent in diplomonads and functionally compensated in Giardia |