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• Differential modulation of pattern and rate in a dopamine neuron model (Canavier and Landry 2006) [Model]

Chadderdon GL, Neymotin SA, Kerr CC, Lytton WW. (2012). Reinforcement learning of targeted movement in a spiking neuronal model of motor cortex. PloS one. 7 [PubMed]

• Reinforcement learning of targeted movement (Chadderdon et al. 2012) [Model]

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Dougalis AG, Matthews GAC, Liss B, Ungless MA. (2017). Ionic currents influencing spontaneous firing and pacemaker frequency in dopamine neurons of the ventrolateral periaqueductal gray and dorsal raphe nucleus (vlPAG/DRN): A voltage-clamp and computational modelling study. Journal of computational neuroscience. 42 [PubMed]

• Dopamine neuron of the vent. periaqu. gray and dors. raphe nucleus (vlPAG/DRN) (Dougalis et al 2017) [Model]

Durstewitz D. (2006). A few important points about dopamine's role in neural network dynamics. Pharmacopsychiatry. 39 Suppl 1 [PubMed]

Frank MJ. (2005). Dynamic dopamine modulation in the basal ganglia: a neurocomputational account of cognitive deficits in medicated and nonmedicated Parkinsonism. Journal of cognitive neuroscience. 17 [PubMed]

• Dynamic dopamine modulation in the basal ganglia: Learning in Parkinson (Frank et al 2004,2005) [Model]

Frank MJ, Samanta J, Moustafa AA, Sherman SJ. (2007). Hold your horses: impulsivity, deep brain stimulation, and medication in parkinsonism. Science (New York, N.Y.). 318 [PubMed]

• Roles of subthalamic nucleus and DBS in reinforcement conflict-based decision making (Frank 2006) [Model]

Gillies A, Willshaw D. (2004). Models of the subthalamic nucleus. The importance of intranuclear connectivity. Medical engineering & physics. 26 [PubMed]

Gruber AJ, Dayan P, Gutkin BS, Solla SA. (2006). Dopamine modulation in the basal ganglia locks the gate to working memory. Journal of computational neuroscience. 20 [PubMed]

Gruber AJ, Solla SA, Surmeier DJ, Houk JC. (2003). Modulation of striatal single units by expected reward: a spiny neuron model displaying dopamine-induced bistability. Journal of neurophysiology. 90 [PubMed]

• Spiny neuron model with dopamine-induced bistability (Gruber et al 2003) [Model]

Grüning A. (2007). Elman backpropagation as reinforcement for simple recurrent networks. Neural computation. 19 [PubMed]

Hazy TE, Frank MJ, O'reilly RC. (2007). Towards an executive without a homunculus: computational models of the prefrontal cortex/basal ganglia system. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 362 [PubMed]

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• Gap junction coupled network of striatal fast spiking interneurons (Hjorth et al. 2009) [Model]

Humphries MD, Stewart RD, Gurney KN. (2006). A physiologically plausible model of action selection and oscillatory activity in the basal ganglia. The Journal of neuroscience : the official journal of the Society for Neuroscience. 26 [PubMed]

• Spiking neuron model of the basal ganglia (Humphries et al 2006) [Model]

Izhikevich EM. (2007). Solving the distal reward problem through linkage of STDP and dopamine signaling. Cerebral cortex (New York, N.Y. : 1991). 17 [PubMed]

• Linking STDP and Dopamine action to solve the distal reward problem (Izhikevich 2007) [Model]

Keramati M, Dezfouli A, Piray P. (2011). Speed/accuracy trade-off between the habitual and the goal-directed processes. PLoS computational biology. 7 [PubMed]

• Speed/accuracy trade-off between the habitual and the goal-directed processes (Kermati et al. 2011) [Model]

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• Model for K-ATP mediated bursting in mSNc DA neurons (Knowlton et al 2018) [Model]

Komendantov AO, Komendantova OG, Johnson SW, Canavier CC. (2004). A modeling study suggests complementary roles for GABAA and NMDA receptors and the SK channel in regulating the firing pattern in midbrain dopamine neurons. Journal of neurophysiology. 91 [PubMed]

• Regulation of the firing pattern in dopamine neurons (Komendantov et al 2004) [Model]

Lindskog M, Kim M, Wikström MA, Blackwell KT, Kotaleski JH. (2006). Transient calcium and dopamine increase PKA activity and DARPP-32 phosphorylation. PLoS computational biology. 2 [PubMed]

• Model of DARPP-32 phosphorylation in striatal medium spiny neurons (Lindskog et al. 2006) [Model]

Morozova EO et al. (2016). Contribution of synchronized GABAergic neurons to dopaminergic neuron firing and bursting. Journal of neurophysiology. 116 [PubMed]

• Excitability of DA neurons and their regulation by synaptic input (Morozova et al. 2016a, 2016b) [Model]

Mozafari M, Kheradpisheh SR, Masquelier T, Nowzari-Dalini A, Ganjtabesh M. (2018). First-Spike-Based Visual Categorization Using Reward-Modulated STDP IEEE Transactions on Neural Networks and Learning Systems.

• First-Spike-Based Visual Categorization Using Reward-Modulated STDP (Mozafari et al. 2018) [Model]

O'Reilly RC, Frank MJ. (2006). Making working memory work: a computational model of learning in the prefrontal cortex and basal ganglia. Neural computation. 18 [PubMed]

O`Reilly RC, Frank MJ. (2005). Making Working Memory Work: A Computational Model of Learning in the Prefrontal Cortex and Basal Ganglia Neural Comput. 18

Porr B, Wörgötter F. (2007). Learning with "relevance": using a third factor to stabilize Hebbian learning. Neural computation. 19 [PubMed]

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• Control of oscillations and spontaneous firing in dopamine neurons (Rumbell & Kozloski 2019) [Model]

Wörgötter F, Porr B. (2005). Temporal sequence learning, prediction, and control: a review of different models and their relation to biological mechanisms. Neural computation. 17 [PubMed]

Yu N, Canavier CC. (2015). A Mathematical Model of a Midbrain Dopamine Neuron Identifies Two Slow Variables Likely Responsible for Bursts Evoked by SK Channel Antagonists and Terminated by Depolarization Block. Journal of mathematical neuroscience. 5 [PubMed]

• Phase plane reveals two slow variables in midbrain dopamine neuron bursts (Yu and Canavier, 2015) [Model]