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1. modified_yasara_scripts modified_yasara_scripts Public

   Modified YASARA macros for specific data analysis tasks

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2. Bending_Energy_Calculations Bending_Energy_Calculations Public

   Functions to calculate mean curvature energies of oblate spheroids, elliptical hyperboloids, and their various combinations, together with their surface area.

   Python 1

3. YASARA_Data_Analysis YASARA_Data_Analysis Public

   Reads raw YASARA simulation data for hbonds, and outputs the counts as a fraction of time for all interfacial hydrogen bonds. Also provides mean energy and distance for interfacial hbonds. Optional…

   Python 1

4. AndrewNG_NN_from_Scratch_in_Python AndrewNG_NN_from_Scratch_in_Python Public

   Implementing the feedforward/backpropagation algorithm and for a 2 later neural network and applying it to the MNIST dataset.

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5. Point-Spread-Function-Fitting-Test Point-Spread-Function-Fitting-Test Public

   Given a tab delimited text file having values of x, y ,z and f(x,y,z), hypothesize that the f(x,y,z) ~ 3D gaussian. Find of best parameters of the 3D gaussian using a steepest descent algorithm - t…

   Python