An open-source, cross-platform terminal for seamless workflows

An Open Source implementation of Notebook LM with more flexibility and features

🕸️ Web apps in pure Python 🐍

Nextflow pipeline for deep learning segmentation models

3D printer / slicing GUI built on top of the Uranium framework

Pydantic models for the TensorStore Spec

LabKey Community Edition docker quick start guide

LLM agents built for control. Designed for real-world use. Deployed in minutes.

Python nested loops as classes for improved readability and modularity

Configuration with Dataclasses+YAML+Argparse. Fork of Pyrallis

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

An Open-Source web application to plan and document cloning and genome engineering

The backend application for OpenCloning

Sample and Measurement Metadata Database

Main tasks for the Fractal analytics platform

Container runtimes on macOS (and Linux) with minimal setup

Fly through your shell history. Great Scott!

Allocates text labels in matplotlib

A high performance Python graph library implemented in Rust.

web development, streamlined

A spatial graph datastructure for python

A basis for a napari plugin for manually correcting cell segmentation in 3D (z, y, x) or 4D (t, z, y, x) (virtual) arrays.

Reference implementation of the Graph Exchange File Format

Read MRC format image files into napari using the mrcfile package from CCP-EM

A common data structure and basic tools for multi-object tracking.

Pure Python Micro-Manager GUI Application, built on pymmcore-plus

Repo for discussing a unified effort towards a pymmcore-plus gui.

Graph-based framework to manipulate and analyze cell lineages from cell tracking data

Cell tracking and segmentation software