openslide
Here are 42 public repositories matching this topic...
Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.
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Jul 25, 2024 - Jupyter Notebook
Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay
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Jan 13, 2025 - JavaScript
Full package for applying deep learning to virtual slides.
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Sep 7, 2018 - Python
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
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Dec 10, 2024 - Python
🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
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Nov 22, 2022 - Python
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
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Sep 25, 2023 - Python
A pyqt5 widget for viewing whole-slide images with Openslide
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Feb 3, 2018 - Python
Preprocessing module for large histological images
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Jun 16, 2023 - Python
a toolbox for manipulation of digital pathology slides and annotations
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Aug 11, 2020 - Jupyter Notebook
European Computer Vision Library (ECVL). A general-purpose computer vision library developed to support healthcare use cases within the DeepHealth project, with the aim of facilitating the integration of existing state-of-the-art libraries.
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Apr 29, 2022 - C++
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
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Jun 28, 2021 - JavaScript
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
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Jun 23, 2025 - C#
An ITK ImageIO module for the OpenSlide library.
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Mar 26, 2025 - C++
🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.
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Oct 20, 2025 - Python
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