Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Amplicon sequence processing workflow using QIIME 2 and Snakemake

Accurate sample inference from amplicon data with single nucleotide resolution

Workflow stages and data for Morando, Magasin et al. 2024

National workshop on microbiome informatics

DADA2 pipeline for nitrogenase (nifH) amplicon sequences (Illumina paired-end)

A repository with a general dada2 pipeline for amplicon processing

Amplicon sequencing workflow with snakemake and dada2

Code and repository links for Klein & Frühe et al. 2024

A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

Bioinformatic data analysis scripts and pipelines

Processing NEON soil microbe marker gene sequence data into ASV tables.

The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.

En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.

Dadaist2 🟨 Highway to R

Metabarcoding analysis pipeline, using DADA2 and qiime2

Here we discuss strategies and workflows to analyse metagenomics datasets

A pipeline to analyse marine fish amplicon data

A metabarcoding pipeline for analysing Illumina amplicon data.