Python project example for Sentinel-1 calibration using CWL for the build/test development phase

CWL that generates a mock STAC item. Can be useful for testing the zoo-project-dru software.

PLANTOGEN-A, an automated genome assembly pipeline designed to assemble symbiont microorganisms genome from Oxford Nanopore (ONT) data.

Prototype implementation of LivePaper with GIS indices as the subject.

This workflow performs annotation on SNV and INDEL VCFs.

Growth Rate Index Calculater wrapped by CWL

Template for running Toil on LSF HPC with ELK stack logging

CWL examples with the OrfeoToolbox

The CWL workflow to execute the OxoG filter.

Wrapper tool of RaGOO by CWL and Docker

OGC API Processes with ZOO Project

CWL examples using GDAL

OGC EO Application Package Hands-on

Analysis workflow for novel gene search based on structural similarity search

Infrastructure as a code for reproducible data science pipelines using CWL and Airflow

A CWL implementation of a modular GATK Variant Calling pipeline

Generation Quality Controls Files for MSK-ACCESS

Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS

A list of subworkflows used for MSK-ACCESS data processing.