Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
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Aug 20, 2025 - TeX
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bioconductor-packages
Here are 23 public repositories matching this topic...
[DEPRECATED] An R package for Google Genomics API queries.
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Mar 15, 2023 - R
This is the ensembldb development repository.
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Aug 18, 2025 - R
This RNAseq data analysis tutorial is created for educational purpose
tutorial rna-seq r analysis ngs gene-expression pca-analysis rnaseq deseq2 bioconductor-packages enrichment-analysis edger ngs-analysis rnaseq-workshop reactome-pathway rnaseq-pipeline rna-seq-dge
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Sep 30, 2025 - R
R Package for Computing and Visualizing CRAN and Bioconductor Downloads
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Oct 15, 2025 - R
Package to calculate functional similarity between genes https://biocor.llrs.dev
bioinformatics gene gene-sets similarity similarity-measurement pathways bioconductor-packages pathway-analysis functional-similarity
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Oct 20, 2025 - R
📦 🔬 R/biotmle: Targeted Learning with Moderated Statistics for Biomarker Discovery
machine-learning bioinformatics r statistics computational-biology biostatistics bioconductor targeted-learning bioconductor-packages causal-inference biomarker-discovery bioconductor-package
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Oct 14, 2021 - R
HiCBricks offers user-friendly and efficient solutions for handling large high-resolution Hi-C datasets. The package provides a R/Bioconductor framework with the bricks to build more complex data analysis pipelines and algorithms.
hdf5 hi-c genome-sequencing bioconductor-packages bioconductor-package chromatin-structure chromatin-organisation
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Sep 5, 2023 - R
📦 🔬 R/methyvim: Targeted, Robust, and Model-free Differential Methylation Analysis
machine-learning bioinformatics r statistics variable-importance computational-biology biostatistics bioconductor dna-methylation targeted-learning bioconductor-packages methylation-microarrays causal-inference bioconductor-package
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Apr 28, 2020 - TeX
Source code for the Bioconductor workshop "Integrating gene expression and DNA-binding data using R/Bioconductor"
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Feb 27, 2021 - Dockerfile
Material for useR!2021 talk: Reviewing packages; how does it work?
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Nov 4, 2021 - HTML
Bio Statistics R Coding Using Dataset AntiProfilesData Genomics Data Structure Processing.
data-science biostatistics pca-analysis data-analysis r-language problem-solving bioconductor-packages r-programming biobase genomics-data biostatistical-computing bioinformtics
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Jan 30, 2023 - R
This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/ChIPsim.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=ChIPsim.
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Oct 16, 2015 - R
This is a version of topGO using roxygen2 and Rmd
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May 22, 2019 - R
Bioconductor code mirror ar https://github.com/bioc
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Aug 21, 2025 - R
LaTeX sources for dissertation
markov-chain dissertation bioconductor-packages bayesian-statistics statistical-models r-packages nascent-rna-seq
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Aug 6, 2025 - TeX
In this lab we will perform a differential expression analysis starting from scratch. Doxorubicin is a commonly prescribed cancer drug, but one of its side effects is cardiotoxicity. This drug damages heart cells by binding to the protein topoisomerase-II beta, or Top2b.
bioinformatics rstudio biostatistics bioconductor bioconductor-packages differential-expression differential-expression-analysis
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Jun 30, 2023 - HTML
Repository for bulk RNA-seq analyses (from undergrad 2nd-3rd year) – Reorganized
hisat2 salmon bioconductor-packages samtools edger limma cran-r fastqc rna-seq-pipeline bulk-rna-seq salmon-deseq2 sra-toolkit feature-counts deseq2-pipeline
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Oct 20, 2025 - R
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