Materials of FutureTDM project

Arbovirus and dengue data from Puerto Rico

This repository includes the codes and data used in the study: "Spatio-temporal clusters and patterns of spread of dengue, chikungunya, and Zika in Colombia", by Laís Picinini Freitas, Mabel Carabali, Mengru Yuan, Gloria I. Jaramillo-Ramirez, Cesar Garcia Balaguera, Berta N. Restrepo, and Kate Zinszer.

I noticed that traditional methods to predict a disease outbreak was by performing sentiment analysis on Twitter posts and Google Search terms. Unfortunately, these methods were inadequate, as Twitter and Google is not popular in all countries. So, I created a system to model and predict outbreaks without the need for social media. The system wa…

Zika Phylogeography

Python package to optimize mosquito traps' positioning in field trials.

AedesWebview on examples. Interactive Brazilian map for some diseases

Nanopore base caller based on original Chiron adding Dropout and SRU

This repository includes the codes and data used for the study: "Identifying hidden Zika hotspots in Pernambuco, Brazil: A spatial analysis", by: Laís P Freitas, Rachel Lowe, Andrew E Koepp, Sandra A Valongueiro, Molly Dondero, Leticia J Marteleto.

Phylogeographic analyses of ZIKV

API NODE for improved J48 Classification Tree for the Prediction of Dengue, Chikungunya or Zika.

Base de dados estudo de sindrome congenita

Scripts to download and analyze the publicly available data on Dengue and Zika in Argentina, provided by the Argentinian Ministry of Health (work in progress).

R script used for the paper "Space-time dynamics of a triple epidemic: dengue, chikungunya and Zika clusters in the city of Rio de Janeiro", by Laís P. Freitas, Oswaldo G. Cruz, Rachel Lowe and Marilia S. Carvalho.

Dataviz around the Zika virus outbreaks in 2018/2019. Demo of web scraping using Python (lxml)

Zika Cases by Country

Windows of Susceptibility Analysis for Brain Diseases