Jan is an open source alternative to ChatGPT that runs 100% offline on your computer.

Pipeline to simulate HT-SGS datasets, from arbitrary RNA populations to CCS reads.

PBSIM3: a simulator for all types of PacBio and ONT long reads

Versatile open-source tool for microbiome analysis

Use a GenBank file to extract sequences for features and other information from another genome

Pipeline to provide high accuracy single molecule consensus sequences from PacBio data using unique molecular identifiers (UMIs).

Repository for suggesting new lineages that should be added to the current scheme

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

De novo assembler for single molecule sequencing reads using repeat graphs

Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

Mapping mutations to the SARS-CoV-2 B.1.351 RBD that reduce binding of polyclonal plasmas from B.1.351-convalescent individuals

Ahead of Time compiler for numeric kernels

Fold RNA transcripts in a FASTA-like file

A fast and sensitive gapped read aligner

Rapid mining of RNA structure motifs from profiling data.