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1. ilc-sb-screen ilc-sb-screen Public

   Jupyter notebooks and code accompanying our paper "Insertional mutagenesis identifies drivers of a novel oncogenic pathway in invasive lobular breast carcinoma" in Nature Genetics (2017).

   Jupyter Notebook

2. NKI-CCB/imfusion NKI-CCB/imfusion Public

   Tool for identifying transposon insertions and their effects from RNA-seq data.

   Python 5 1

3. pyim pyim Public

   Tool for identifying transposon insertions from targeted DNA-sequencing data.

   Python 1

4. pybiomart pybiomart Public

   A simple pythonic interface to biomart.

   Python 56 12

5. geneviz geneviz Public

   Library for visualising genomic features in Python.

   Python 15 3

6. airflow-fs airflow-fs Public

   Composable filesystem hooks and operators for Apache Airflow.

   Python 17 9