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shiny_deploy Public
A deployment repo for a Shiny server
Dockerfile MIT License UpdatedJun 25, 2025 -
Bug bounty programme for TextAsData course
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glasgowcs_labtest Public
Testing framework for online labs
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Ab3P Public
Forked from ncbi-nlp/Ab3PAbbreviation definition dection library trained on PubMed abstracts
C UpdatedOct 11, 2024 -
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biotext Public
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
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corona-web Public
Website for viewing database of Coronavirus research at CoronaCentral.ai
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corona-ml Public
Machine learning to text-mine coronavirus research for CoronaCentral.ai
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bioc Public
Forked from bionlplab/biocData structures and code to read/write BioC XML and Json.
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mesh_extract Public
Tool for extracting MeSH tags from PubMed documents
Python MIT License UpdatedSep 26, 2023 -
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biowordlists Public
Biomedical wordlists (of drugs, genes, etc) for several text mining projects
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civicmine Public
Text mining cancer biomarkers for the CIVIC database
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text_classification_in_R Public
Demonstration of some text classification methods in R
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cancermine Public
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
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kindred Public
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
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pgxmine Public
Text mining for pharmacogenomic associations for PharmGKB
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python-base Public
Dockerfile with some useful dependencies installed
Dockerfile MIT License UpdatedJun 24, 2021 -
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bootstrap_lesson Public
Lesson materials for learning the bootstrap method
Jupyter Notebook MIT License UpdatedOct 27, 2020 -
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pubrunner Public
A framework for keeping biomedical text mining result up-to-date
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docstringtest Public
Little package to test if docstrings are up-to-date in Python code
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