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Bovreproseq
Bovreproseq PublicTargeted amplicon sequencing for Bovine Reproductive Pathogens
Nextflow
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InfluenzaA_Typing
InfluenzaA_Typing PublicPipeline for Influenza A Typing using Oxford Nanopore sequencing
Shell 1
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ONT_targseq
ONT_targseq PublicPipeline for reference based consensus generation for amplicon sequencing
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salmonella_serotyping
salmonella_serotyping PublicSalmonella enterica whole genome assembly and serotyping using SISTR
Nextflow 1
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strepsuis_typing
strepsuis_typing PublicWhole genome sequenicng and analysis of Streptocoocus suis isolates
Nextflow 1
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