GitHub - danielelinaro/neuronopt: Neuron model optimization

Neuron model optimization

This repository contains my personal code for data-driven optimization of multi-compartment neuron models.

The code assumes a certain data structure and therefore might not be readily usable with other folder structures.

Please contact me at danielelinaro@gmail.com should you be interested in using the code.

Name		Name	Last commit message	Last commit date
Latest commit History 257 Commits
config		config
dlopt		dlopt
dlutils		dlutils
examples		examples
mechanisms		mechanisms
mechanisms_hbp		mechanisms_hbp
mechanisms_hpc		mechanisms_hpc
.gitignore		.gitignore
AP_backprop.py		AP_backprop.py
LICENSE		LICENSE
README.md		README.md
compare_simulations.py		compare_simulations.py
convert_params.py		convert_params.py
current_injection.py		current_injection.py
extract_final_population_pars.py		extract_final_population_pars.py
fI_curve.py		fI_curve.py
features_utils.py		features_utils.py
firing_rate_distr.py		firing_rate_distr.py
mask_fI_curves.py		mask_fI_curves.py
measure_Rin.py		measure_Rin.py
measure_spine_AR.py		measure_spine_AR.py
morpho_utils.py		morpho_utils.py
optimize_multi_compartment.py		optimize_multi_compartment.py
pick_cells.py		pick_cells.py
plot_optimization_results.py		plot_optimization_results.py
remove_files_from_npz.py		remove_files_from_npz.py
save_impedance_experiment_to_excel.py		save_impedance_experiment_to_excel.py
simulate_synaptic_activation.py		simulate_synaptic_activation.py
synaptic_cooperativity.py		synaptic_cooperativity.py
tune_PSPs.py		tune_PSPs.py
tune_synapses.py		tune_synapses.py