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1. B-UMMI/LMAS B-UMMI/LMAS Public

   LMAS - Last (Meta)Genomic Assembler Standing

   Python 10 2

2. B-UMMI/DEN-IM B-UMMI/DEN-IM Public

   Dengue virus genotyping from shotgun and targeted metagenomics​ - A nextflow pipeline

   Python 7 5

3. assemblerflow/flowcraft assemblerflow/flowcraft Public

   FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. 🐳📦

   Python 241 44

4. B-UMMI/INNUca B-UMMI/INNUca Public

   INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search

   Python 13 7

5. pha4ge/hAMRonization pha4ge/hAMRonization Public

   Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

   Python 142 30

6. pha4ge/SARS-CoV-2-Contextual-Data-Specification pha4ge/SARS-CoV-2-Contextual-Data-Specification Public

   Collection template and associated materials for SARS-CoV-2 metadata

   34 9