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@cvdlab-alumni @cvdlab-projects @galaxyproject @conda-forge @bioconda @BlankenbergLab @nf-core @iasi-cnr @SegataLab

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Showing results

A Slurm cluster using docker-compose

Dockerfile 318 186 Updated Sep 27, 2024

This repo collects the list of learning online resources related to microbiome computational science and tools.

77 12 Updated Nov 14, 2024

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Rust 193 7 Updated Nov 7, 2024

HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors

Rust 21 2 Updated Aug 26, 2024

All Algorithms implemented in Python

Python 194,724 45,824 Updated Nov 25, 2024

Simple Metagenomic Analysis in R

R 1 Updated Sep 6, 2024

A tool for drawing ANI clustermap between all-vs-all microbial genomes

Python 67 9 Updated Sep 14, 2024

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Python 776 49 Updated Sep 26, 2024

A network filesystem client to connect to SSH servers

C 6,040 495 Updated Nov 4, 2024

Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

Shell 48,729 2,720 Updated Nov 18, 2024

Introductions to key concepts in quantum programming, as well as tutorials and implementations from cutting-edge quantum computing research.

Python 558 187 Updated Nov 28, 2024

build-once run-anywhere c library

C 18,453 637 Updated Nov 24, 2024

Get up and running with Llama 3.2, Mistral, Gemma 2, and other large language models.

Go 99,858 7,953 Updated Nov 28, 2024

Interact with Biological Observation Matrix files.

R 11 Updated Oct 24, 2024

Small pipeline to cluster viral genomes based on their k-mer content. WiP

Nextflow 16 5 Updated Jun 18, 2024

Follow up to Grace Blackwell's 661k dataset, for 2023

Python 85 4 Updated Nov 21, 2024

Install kde-plasma-desktop and ubuntu on android (chroot)

35 6 Updated Aug 13, 2022

Linux Chroot Installer & Bootscript Magisk Module.

Shell 200 22 Updated Mar 20, 2024

AltServer-Linux Script python edition

Python 160 17 Updated Nov 28, 2023

fabric is an open-source framework for augmenting humans using AI. It provides a modular framework for solving specific problems using a crowdsourced set of AI prompts that can be used anywhere.

Go 25,655 2,731 Updated Nov 28, 2024

This list of writing prompts covers a range of topics and tasks, including brainstorming research ideas, improving language and style, conducting literature reviews, and developing research plans.

3,302 298 Updated Jan 25, 2024

Online R learning for applied statistics

499 101 Updated Oct 22, 2024

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

C 178 23 Updated Jul 12, 2024

Survival analysis in Python

Python 2,378 560 Updated Oct 29, 2024

whiteboard / infinite canvas SDK

TypeScript 35,987 2,224 Updated Nov 28, 2024

files for building docker image for qiskit in galaxy via jupyter notebooks

Python 2 2 Updated May 24, 2024

Implementation of the Hyperseed algorithm

Jupyter Notebook 10 1 Updated Oct 31, 2021

Unified Human Gut Virome Catalog

Python 27 1 Updated Jul 18, 2024

Platform to experiment with the AI Software Engineer. Terminal based. NOTE: Very different from https://gptengineer.app

Python 52,518 6,822 Updated Nov 17, 2024
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