I work with biological knowledge graphs, machine learning, and artificial intelligence to identify active molecules and to deconvolute their mechanisms of action.
๐งฐ My Projects
- ๐ฎ Bioregistry: an integrative registry of biological databases, ontologies, and nomenclatures.
- ๐งฌ Biological Expression Language (BEL): a domain specific language for representing molecular biology
- ๐ถ๏ธ PyBEL: the computational ecosystem for compiling, querying, and analyzing knowledge graphs encoded in BEL
- ๐ PyOBO: making ontologies and semantics accessible
- ๐ค PyKEEN: knowledge graph embedding models for humans
โ๏ธ My Core Scientific Values
- โป๏ธ Reproducibility: code is part of the scientific process. It should be documented and re-usable by anyone.
- ๐ Openness: science is best when people can build on each others' work. Sharing data, code, and ideas has benefitted everyone, and is also the responsiblity of a scientist to pay forward.
- ๐ฏ Thoroughness: quality is dependent on taking great care throughout all steps
๐ซ My Interblag
Besides my email and blog (on the left), I'm also in the internet in the following places: