METAREP DIRECTORIES

/app     web application files
/cake    cake framework files
/data    example dataset*
/scripts perl and R scripts
/doc     documentation
/mysql   mysql database dump
/solr    solr/lucene configuration files
/vendors 3rd-party php tools

Please visit the project's wiki page at http://wiki.github.com/jcvi/METAREP
for additional information

*De Long vertical ocean depth profile dataset (7 libraries)
http://www.scienceonline.org/cgi/content/full/311/5760/496
JCVI's metagenomics annotation pipeline has been used to annotate the raw reads
http://standardsingenomics.org/index.php/sigen/article/view/sigs.651139