modular API for genetic geolocation using deep neural networks (i.e. version 2 of locator)

A simple Snakemake profile for Slurm without --cluster-config

standardizing spatial simulation slim scripts with a template

torch-optimizer -- collection of optimizers for Pytorch

neural network for estimating demographic maps from SNPs

neural network for estimating demographic maps from SNPs

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

estimating dispersal distance from georeferenced polymorphisms

Domain adaptative deep learning for population genetics

🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

C library for parsing Demes demographic models

manuscript materials for the adding species paper

A list of resources and inititive to help the Ukraine

PyTorch3D is FAIR's library of reusable components for deep learning with 3D data

SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platf…

Analysis for the second consortium paper.

Publication describing msprime 1.0

Examples of canvas questions written in Markdown

Create quizzes in QTI format for Canvas from Markdown-based plain text

Graph grammar library

[mu]tation [s]pectrum [h]istory [i]nference

Forward-time simulation in Python using fwdpp

Recombination Landscape Estimation using Recurrent Neural Networks

deep learning prediction of geographic location from individual genome sequences