Open source datalogger for wireless closed-loop Ephys

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

DataJoint Element for Neuropixels analysis with Kilosort

Binding ID vectors

Codebase for testing whether hidden states of neural networks encode discrete structures.

A curated reading list of research in Sparse Autoencoders, Feature Extraction and related topics in Mechanistic Interpretability

Example DataJoint workflow for lab, subject and session management

pyqt5 dependent applications for IBL sessions

STATS320: Statistical Methods for Neural Data Analysis

Fast spike sorting with drift correction for up to a thousand channels

matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

Python-based module with spike sorter wrappers and a simple API for running them.

cell detection in calcium imaging recordings

Python implementation of Gaussian Process Factor Analysis

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

An interactive cropping widget for Jupyter notebooks