The kfs program reads in multiline FASTA records, counts canonical kmers using Malte Skarupke's bytell_hash_map hash table, and measures time taken to read in and process records.

$ make kfs

Specify variables K (integer) and FASTA (path to FASTA sequences).

$ /usr/bin/time -l ./kfs -k ${K} -i ${FASTA}
...