Repositories list

• EXWAS_pipeline

  Public
  Python

  •

  MIT License

  •0•2•3•0•Updated Oct 20, 2025Oct 20, 2025

• IntAct_Report

  Public
  Explore whether the molecular interactions can improve causal gene identifications by IntAct database

  R

  •1•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• ExWAS_using_AlphaMissense

  Public
  R

  •0•1•0•0•Updated Aug 18, 2024Aug 18, 2024

• EyeArt_Streamline

  Public
  Python

  •0•0•1•0•Updated Aug 9, 2024Aug 9, 2024

• BQC_Ancestry_Proteomics

  Public
  Using the BQC19 to observe how ancestry affects the circulating proteins of pateints with and without COVID-19

  R

  •0•0•0•0•Updated Mar 7, 2024Mar 7, 2024

• COVID19-sQTLMR

  Public
  R

  •0•1•0•0•Updated Feb 19, 2024Feb 19, 2024

• metabolomics_GWAS_CLSA

  Public
  R

  •2•19•1•0•Updated Jan 8, 2024Jan 8, 2024

• dynamic_QTL_COVID19

  Public
  R

  •0•1•0•1•Updated Jun 8, 2023Jun 8, 2023

• gtex-pipeline

  Public
  GTEx & TOPMed data production and analysis pipelines

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •185•0•0•2•Updated Mar 6, 2023Mar 6, 2023

• MRutils

  Public
  A repository that builds and defines the environment needed for doing MR, and a few utility methods to boot.

  R

  •

  Other

  •1•5•6•0•Updated Dec 29, 2022Dec 29, 2022

• slalomPublic

  SLALOM (suspicious loci analysis of meta-analysis summary statistics)

  Python

  •

  MIT License

  •5•0•0•0•Updated Nov 17, 2022Nov 17, 2022

• snappy

  Public
  Shell

  •0•2•0•0•Updated Nov 16, 2022Nov 16, 2022

• LDlinkR

  Public
  LDlinkR

  R

  •10•0•0•0•Updated Sep 15, 2022Sep 15, 2022

• Terra_synchronizer

  Public
  A python tool for synchronizing a local directory & json file with a Terra data-table

  Python

  •

  MIT License

  •1•0•3•0•Updated Jul 12, 2022Jul 12, 2022

• NPNT_COVID19

  Public
  0•0•0•0•Updated Jul 11, 2022Jul 11, 2022

• aFC

  Public
  Calculates allelic Fold Change (aFC) using standard input files for fastQTL.

  Python

  •11•0•0•0•Updated Jul 4, 2022Jul 4, 2022

• BQC19_genotype_pipeline

  Public
  R

  •0•1•0•0•Updated Jun 24, 2022Jun 24, 2022

• pyqtl

  Public
  Collection of analysis tools for quantitative trait loci

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •11•0•0•0•Updated Jun 18, 2022Jun 18, 2022

• COVID19-LongCOVID-epidemiology

  Public
  R

  •0•0•0•0•Updated Jun 13, 2022Jun 13, 2022

• wiki

  Public
  0•0•0•0•Updated Mar 15, 2022Mar 15, 2022

• kallisto

  Public
  WDL

  •0•0•0•0•Updated Feb 9, 2022Feb 9, 2022

• project_template

  Public template
  A template for a project with CI and a docker image

  Shell

  •

  MIT License

  •0•0•0•0•Updated Nov 23, 2021Nov 23, 2021

• OAS1_followup

  Public
  R

  •0•0•0•0•Updated Jun 30, 2021Jun 30, 2021

• VitaminD_COVID_MR

  Public
  An attempt to recreate Guillaummes V-D/COVID MR paper

  R

  •0•2•0•0•Updated May 3, 2021May 3, 2021

• RPackageTemplate

  Public template
  A Template for setting up an R project

  Dockerfile

  •0•0•0•1•Updated Apr 13, 2021Apr 13, 2021

• Ei

  Public
  Data and code for the Effector index

  R

  •1•14•4•0•Updated Oct 13, 2020Oct 13, 2020

• MR-VEGF-Osteoporosis

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jun 20, 2019Jun 20, 2019

• Mendelian-Randomization

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Jun 10, 2019Jun 10, 2019

• gefos.seq

  Public
  R

  •0•1•0•0•Updated Jun 19, 2015Jun 19, 2015