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    55 repositories

    • scCP

      Public
      PARAFAC2 for modeling multi-sample single-cell RNAseq.
      factorizationtensorstensorlyparafac
      Jupyter Notebook
      •
      MIT License
      •0•2•0•2•Updated Nov 24, 2024Nov 24, 2024

    • valentBind

      Public
      The multivalent binding model implemented in Python.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 24, 2024Nov 24, 2024

    • tensor-impute

      Public
      Explore imputation methods for tensor data
      Python
      •
      MIT License
      •0•1•0•4•Updated Nov 23, 2024Nov 23, 2024

    • tensordata

      Public
      A common repository for tensor structured datasets.
      Python
      •
      MIT License
      •0•0•1•0•Updated Nov 23, 2024Nov 23, 2024

    • mrsa-ca

      Public
      Python
      •0•0•0•4•Updated Nov 21, 2024Nov 21, 2024

    • bi-cytok

      Public
      Modeling bispecific cytokine fusions.
      Python
      •
      MIT License
      •1•0•0•4•Updated Nov 20, 2024Nov 20, 2024

    • asmlab.org

      Public
      Meyer lab website
      jekylllaboratorygithub-pageswebsiteacademic
      TeX
      •0•2•4•0•Updated Nov 20, 2024Nov 20, 2024

    • spatial-pf2

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 20, 2024Nov 20, 2024

    • barcoded-Pf2

      Public
      Pf2 exploration of cell-to-cell heterogeneity with barcoded cell lines.
      Jupyter Notebook
      •
      MIT License
      •0•0•0•3•Updated Nov 13, 2024Nov 13, 2024

    • BAL-Pf2

      Public
      Pf2 analysis of BAL samples
      Python
      •0•0•4•0•Updated Nov 6, 2024Nov 6, 2024

    • tensorly

      Public
      TensorLy: Tensor Learning in Python.
      Python
      •
      Other
      •289•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • mechanismSerology

      Public
      Inferring antibody species from systems serology with a mechanistic binding model.
      Python
      •0•0•0•5•Updated Oct 16, 2024Oct 16, 2024

    • parafac2

      Public
      A scalable implementation of PARAFAC2 with line search.
      tensorstensorlyparafac2
      Python
      •
      MIT License
      •1•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • Pf2-scRNAseq

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • fit-framework

      Public
      Framework for fitting least squares problem involving variable parameters that may be shared across multiple samples.
      Python
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • cetuximab-binding-model

      Public
      Modeling ADCC cytokine release assay with binding model.
      Jupyter Notebook
      •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

    • cmtf-pls

      Public
      A Partial Least Squares (PLS) implementation in CMTF.
      Python
      •
      MIT License
      •0•0•1•7•Updated Sep 9, 2024Sep 9, 2024

    • tensorpack

      Public
      A collection of tensor methods from the Meyer lab.
      Python
      •
      MIT License
      •2•2•1•0•Updated Sep 9, 2024Sep 9, 2024

    • tfac-CoH

      Public
      Decoding cytokine signaling networks in cancer patients
      Python
      •
      MIT License
      •0•0•2•1•Updated Sep 5, 2024Sep 5, 2024

    • tensor_review

      Public
      The structure is the message: preserving experimental context through tensor decomposition
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jul 12, 2024Jul 12, 2024

    • FcRn-trafficking

      Public archive
      Trafficking model of FcRn to explain the effects of failed release at the cell surface.
      scienceinferenceimmunologyacademic-project
      R
      •
      MIT License
      •0•1•0•0•Updated Jun 30, 2024Jun 30, 2024

    • Barney-Peyton

      Public archive
      Code for modeling performed in Barney et al.
      biosignaling-pathwaysregression
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • gc-valent

      Public archive
      Exploring what valency does to IL-2.
      immunologyacademic-projectuclamanuscriptcytokine-receptors
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Jun 30, 2024Jun 30, 2024

    • FcRegression.jl

      Public archive
      Study Fc antibody dynamics using a multivalent binding model
      Julia
      •0•2•6•0•Updated Jun 30, 2024Jun 30, 2024

    • IL4-model

      Public archive
      Jupyter Notebook
      •0•2•0•0•Updated Jun 30, 2024Jun 30, 2024

    • DDMC

      Public
      Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.
      canceracademic-projectphosphoproteomicsdrug-resistance
      Python
      •1•1•0•5•Updated Jun 18, 2024Jun 18, 2024

    • tfac-mrsa

      Public
      A multi-omic view of MRSA infection using tensor factorization
      Python
      •
      MIT License
      •1•0•0•3•Updated Jun 17, 2024Jun 17, 2024

    • tHMM

      Public
      A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
      inferencebioengineeringheterogeneitycell-biologydrug-response
      Python
      •
      MIT License
      •1•10•2•5•Updated Apr 12, 2024Apr 12, 2024

    • tHMMsim

      Public
      Python
      •
      MIT License
      •0•0•0•3•Updated Apr 3, 2024Apr 3, 2024

    • CPTAC-tensor

      Public
      Exploring the CPTAC dataset using coupled tensors.
      Python
      •
      MIT License
      •0•0•0•4•Updated Oct 4, 2023Oct 4, 2023