Deprecated: Function get_magic_quotes_gpc() is deprecated in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 99

Deprecated: The each() function is deprecated. This message will be suppressed on further calls in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 619

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1169

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176

Warning: Cannot modify header information - headers already sent by (output started at /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php:99) in /hermes/walnacweb04/walnacweb04ab/b2791/pow.jasaeld/htdocs/De1337/nothing/index.php on line 1176
8000 Install current workdir version of tools in devcontainer by JulianFlesch · Pull Request #3840 · nf-core/tools · GitHub
Nothing Special   »   [go: up one dir, main page]

Skip to content

Conversation

JulianFlesch
Copy link
Contributor

Closes #3837

  • Always installs nf-core/tools based on current workdir (only in the devcontainer for this repository). This enables pre-viewing the tools version in PRs
  • Remove building the nfcore/devcontainer:dev image as it will be obsolete with these changes

PR checklist

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md is updated
  • If you've fixed a bug or added code that should be tested, add tests!
  • Documentation in docs is updated

Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

not sure about this one, we might still want to use the dev version in modules for example, where we lint based on that.

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

We are changing the tag in devcontainer.json now for every release, like we did before. Is this why we don't need this code anymore?

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

@mashehu : If we want the dev features somewhere let's keep it 👍

@mirpedrol : Not quite. If we change to installing whatever the current state (at a commit) is at devcontainer startup, this will automatically install the "dev" and "main" state if we run it from those branches ;) But it will also enable installing the state at a PR if you run codespaces from there.

Copy link
Contributor Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

We should actually remove that step from the Checklist, as it will now be obsolete! We can always use the latest tag

@github-project-automation github-project-automation bot moved this from Todo to In Progress in nf-core infrastructure projects Oct 17, 2025
@codecov
Copy link
codecov bot commented Oct 17, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 77.26%. Comparing base (656637e) to head (89a028d).
⚠️ Report is 10 commits behind head on dev.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

JulianFlesch and others added 3 commits October 19, 2025 17:14
Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
…ch/nf-core-tools into issues/3837-impr-devcontainer
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

Status: In Progress

Development

Successfully merging this pull request may close these issues.

3 participants

0