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some omevalidation checks are too strict or misapplied

bugSomething isn't workingSomething isn't working

Status: Open.

#121 In nf-core/mcmicro;

· jmuhlich opened on Oct 20, 2025

basicpy container problems with singularity/apptainer

bugSomething isn't workingSomething isn't working

Status: Open.

#118 In nf-core/mcmicro;

· jmuhlich opened on Oct 19, 2025

Registration processes are not launched until all illumination processes complete

bugSomething isn't workingSomething isn't working

Status: Open.

#105 In nf-core/mcmicro;

· jmuhlich opened on Oct 2, 2025

Add a test that multi-cycle samples produce the expected number of output files

Status: Open.

Task

#102 In nf-core/mcmicro;

· jmuhlich opened on Sep 24, 2025

Color heterogeneity

Status: Open.

#92 In nf-core/mcmicro;

· tkcaccia opened on Jun 18, 2025

Use $meta.id as basicpy output filename base

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#85 In nf-core/mcmicro;

· jmuhlich opened on Apr 23, 2025

Add CODEX to MCMICRO module

Status: Open.

#81 In nf-core/mcmicro;

· EfraMP opened on Mar 24, 2025

Resume not working from modules where markersheet is collected

bugSomething isn't workingSomething isn't working

Status: Open.

#80 In nf-core/mcmicro;

· kbestak opened on Mar 24, 2025

Add staging module for Imaging Mass Cytometry data

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#68 In nf-core/mcmicro;

· MargotCh opened on Nov 6, 2024

Add option to skip registration.

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#64 In nf-core/mcmicro;

· kbestak opened on Oct 25, 2024

Implement Roadie for channel extraction

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#62 In nf-core/mcmicro;

· kbestak opened on Oct 25, 2024

Create proper test dataset for background subtraction

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#59 In nf-core/mcmicro;

· RobJY opened on Oct 8, 2024