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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.5k 463

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 394 79

  3. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Python 247 24

  4. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 576 76

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 418 41

  6. MIL-Lab MIL-Lab Public

    Feather - Lightweight supervised slide foundation models (ICML 2025)

    Python 97 10

Repositories

Showing 10 of 34 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 394 79 25 (1 issue needs help) 11 Updated Sep 18, 2025
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST’s past year of commit activity
    Python 319 36 18 0 Updated Sep 1, 2025
  • KRONOS Public

    Foundation Model for Multiplex Spatial Proteomic Images

    mahmoodlab/KRONOS’s past year of commit activity
    Jupyter Notebook 158 25 3 1 Updated Aug 22, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 107 20 6 0 Updated Aug 6, 2025
  • MIL-Lab Public

    Feather - Lightweight supervised slide foundation models (ICML 2025)

    mahmoodlab/MIL-Lab’s past year of commit activity
    Python 97 10 0 0 Updated Jul 31, 2025
  • CLAM Public

    Open source tools for computational pathology - Nature BME

    mahmoodlab/CLAM’s past year of commit activity
    Python 1,469 GPL-3.0 462 32 10 Updated Apr 15, 2025
  • UNI Public

    Pathology Foundation Model - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 576 76 27 2 Updated Mar 26, 2025
  • CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 418 41 9 2 Updated Mar 26, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Python 247 24 1 0 Updated Mar 18, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 96 12 1 0 Updated Feb 23, 2025
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