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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    Code Ocean pipeline for processing extracellula electrophysiology data

    Nextflow 7 2

  4. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  5. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  6. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 5

Repositories

Showing 10 of 288 repositories
  • lamf-analysis Public

    Place for scientists & engineers on ophys-mFish projects (Learning mFISH, omFISH) to put ophys data processing development code, especially as a place to ease transition from LIMS to Codeocean

    AllenNeuralDynamics/lamf-analysis’s past year of commit activity
    Jupyter Notebook 1 MIT 0 20 0 Updated Nov 28, 2024
  • aind-ephys-processing-qc Public

    CodeOcean Capsule for ephys quality control

    AllenNeuralDynamics/aind-ephys-processing-qc’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 28, 2024
  • aind-exaspim-soma-detection Public
    AllenNeuralDynamics/aind-exaspim-soma-detection’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 28, 2024
  • aind-behavior-video-transformation Public

    Library to manage compression and transformation of behavior videos

    AllenNeuralDynamics/aind-behavior-video-transformation’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Nov 28, 2024
  • foraging-behavior-browser Public

    Foraging behavior browser (streamlit)

    AllenNeuralDynamics/foraging-behavior-browser’s past year of commit activity
    Python 2 MIT 2 14 0 Updated Nov 28, 2024
  • aind-foraging-behavior-bonsai-trigger-pipeline Public
    AllenNeuralDynamics/aind-foraging-behavior-bonsai-trigger-pipeline’s past year of commit activity
    Python 1 MIT 0 1 0 Updated Nov 28, 2024
  • aind-dynamic-foraging-data-utils Public

    Tools for the analysis of behavior and neural data from the dynamic foraging task

    AllenNeuralDynamics/aind-dynamic-foraging-data-utils’s past year of commit activity
    Python 2 MIT 0 22 (3 issues need help) 0 Updated Nov 27, 2024
  • aind-metadata-entry-js Public

    Metadata entry using javascript

    AllenNeuralDynamics/aind-metadata-entry-js’s past year of commit activity
    JavaScript 1 MIT 2 8 0 Updated Nov 27, 2024
  • aind-multiplane-ophys-pipeline-without-splitting Public
    AllenNeuralDynamics/aind-multiplane-ophys-pipeline-without-splitting’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 27, 2024
  • metadata-chatbot Public

    LLM (Anthropic Claude) based chatbot that can query, ingest and summarize metadata in a conversational form

    AllenNeuralDynamics/metadata-chatbot’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Nov 27, 2024
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