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@MDAnalysis

MDAnalysis

working with data in the computational molecular sciences

MDAnalysis

The MDAnalysis Community is interested in all facets of working with data in the computational molecular sciences. We welcome everyone. We all follow our Code of Conduct.

We maintain a number of projects related to the broader goal of processing and analyzing data in the computational molecular sciences. In particular, mdanalysis is a Python library for the analysis of computer simulations of many-body systems at the molecular scale, spanning use cases from interactions of drugs with proteins to novel materials. It is widely used in the scientific community and is written by scientists for scientists.

You can learn more about MDAnalysis on our home page https://www.mdanalysis.org/ and read regular updates in our blog. You can also follow us on LinkedIn: MDAnalysis and BlueSky @mdanalysis.bsky.social.

MDAnalysis is a fiscally sponsored project of NumFOCUS, a nonprofit dedicated to supporting the open source scientific computing community.

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  1. mdanalysis mdanalysis Public

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    Python 1.5k 732

  2. mdacli mdacli Public

    Command line interface for MDAnalysis

    Python 20 7

  3. MDAnalysisData MDAnalysisData Public

    Access to data for workshops and extended tests of MDAnalysis.

    Python 17 4

  4. GridDataFormats GridDataFormats Pu 10BC0 blic

    GridDataFormats is a pure Python library to handle data on a regular grid using commonly used file formats in molecular simulations.

    Python 30 18

  5. UserGuide UserGuide Public

    User Guide for MDAnalysis

    Python 27 42

  6. distopia distopia Public

    SIMD instructions for faster distance calculations.

    C++ 23 6

Repositories

Showing 10 of 74 repositories
  • UGM2025 Public

    Materials for the 2025 MDAnalysis User Group Meeting

    MDAnalysis/UGM2025’s past year of commit activity
    TeX 1 0 13 1 Updated Oct 22, 2025
  • MDAKits Public

    The MDAnalysis Toolkits Registry

    MDAnalysis/MDAKits’s past year of commit activity
    Python 19 31 41 8 Updated Oct 20, 2025
  • mdacli Public

    Command line interface for MDAnalysis

    MDAnalysis/mdacli’s past year of commit activity
    Python 20 GPL-3.0 7 9 (4 issues need help) 0 Updated Oct 20, 2025
  • MDAnalysis.github.io Public

    MDAnalysis home page mdanalysis.org as GitHub pages.

    MDAnalysis/MDAnalysis.github.io’s past year of commit activity
    CSS 15 47 21 (2 issues need help) 3 Updated Oct 20, 2025
  • mdanalysis Public

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    MDAnalysis/mdanalysis’s past year of commit activity
    Python 1,477 732 424 (35 issues need help) 62 Updated Oct 20, 2025
  • benchmarks Public

    Performance benchmarks of MDAnalysis provided by ASV.

    MDAnalysis/benchmarks’s past year of commit activity
    Shell 2 BSD-3-Clause 1 1 0 Updated Oct 14, 2025
  • pytng Public

    Python bindings for TNG file format

    MDAnalysis/pytng’s past year of commit activity
    C 13 BSD-3-Clause 5 11 1 Updated Oct 14, 2025
  • distopia Public

    SIMD instructions for faster distance calculations.

    MDAnalysis/distopia’s past year of commit activity
    C++ 23 MIT 6 11 1 Updated Oct 13, 2025
  • GridDataFormats Public

    GridDataFormats is a pure Python library to handle data on a regular grid using commonly used file formats in molecular simulations.

    MDAnalysis/GridDataFormats’s past year of commit activity
    Python 30 LGPL-3.0 18 4 1 Updated Oct 12, 2025
  • mdanalysis-sphinx-theme Public

    The official MDAnalysis Sphinx documentation theme.

    MDAnalysis/mdanalysis-sphinx-theme’s past year of commit activity
    Sass 1 1 6 5 Updated Oct 12, 2025
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