Organic Chemistry/Overview of Functional Groups

==Introduction== MER!!!:3 The number of known organic compounds is quite large. In fact, there are many times more organic compounds known than all the other (inorganic) compounds discovered so far, about 7 million organic compounds in total. Fortunately, organic chemicals consist of a relatively few similar parts, combined in different ways, that allow us to predict how a compound we have never seen before may react, by comparing how other molecules containing the same types of parts are known to react.

These parts of organic molecules are called functional groups. The identification of functional groups and the ability to predict reactivity based on functional group properties is one of the cornerstones of organic chemistry.

Functional groups are specific atoms, ions, or groups of atoms having consistent properties. A functional group makes up part of a larger molecule.

For example, -OH, the hydroxyl group that characterizes alcohols, is an oxygen with a hydrogen attached. It could be found on any number of different molecules.

Just as elements have distinctive properties, functional groups have characteristic chemistries. An -OH group on one molecule will tend to react similarly, although perhaps not identically, to an -OH on another molecule.

Organic reactions usually take place at the functional group, so learning about the reactivities of functional groups will prepare you to understand many other things about organic chemistry.

Don't assume that you can simply skim over the functional groups and move on. As you proceed through the text, the writing will be in terms of functional groups. It will be assumed that the student is familiar with most of the ones in the tables below. It's simply impossible to discuss chemistry without knowing the "lingo". It's like trying to learn French without first learning the meaning of some of the words.

One of the easiest ways to learn functional groups is by making flash cards. Get a pack of index cards and write the name of the functional group on one side, and draw its chemical representation on the other.

For now, a list of the most important ones you should know is provided here. Your initial set of cards should include, at the very least: Alkene, Alkyne, Alkyl halide (or Haloalkane), Alcohol, Aldehyde, Ketone, Carboxylic Acid, Acyl Chloride (or Acid Chloride), Ester, Ether, Amine, Sulfide, and Thiol. After you've learned all these, add a couple more cards and learn those. Then add a few more and learn those. Every functional group below is eventually discussed at one point or another in the book. But the above list will give you what you need to continue on.

And don't just look at the cards. Say and write the names and draw the structures. To test yourself, try going through your cards and looking at the names and then drawing their structure on a sheet of paper. Then try going through and looking at the structures and naming them. Writing is a good technique to help you memorize, because it is more active than simply reading. Once you have the minimal list above memorized backwards and forwards, you're ready to move on. But don't stop learning the groups. If you choose to move on without learning the "lingo", then you're not going to understand the language of the chapters to come. Again, using the French analogy, it's like trying to ignore learning the vocabulary and then picking up a novel in French and expecting to be able to read it.

In organic chemistry functional groups are submolecular structural motifs, characterized by specific elemental composition and connectivity, that confer reactivity upon the molecule that contains them.

Common functional groups include:

Chemical class	Group	Formula	Graphical Formula	Prefix	Suffix	Example
Acyl halide	Haloformyl	RCOX		haloformyl-	-oyl halide	Acetyl chloride (Ethanoyl chloride)
Alcohol	Hydroxyl	OH		hydroxy-	-ol	Methanol
Aldehyde	Aldehyde	RCHO		oxo-	-al	:Acetaldehyde (Ethanal)
Alkane	Alkyl	RHn		alkyl-	-ane	Methane
Alkene	Alkenyl	R2C=CR2	Alkene	alkenyl-	-ene	ethylene Ethylene (Ethene)
Alkyne	Alkynyl	RC≡CR'		alkynyl-	-yne	Acetylene (Ethyne)
Amide	Carboxamide	RCONR2		carboxamido-	-amide	Acetamide (Ethanamide)
Amines	Primary amine	RNH2		amino-	-amine	Methylamine (Methanamine)
	Secondary amine	R2NH		amino-	-amine	Dimethylamine
	Tertiary amine	R3N		amino-	-amine	Trimethylamine
	4° ammonium ion	R4N+		ammonio-	-ammonium	Choline
Azo compound	Azo (Diimide)	RN2R'		azo-	-diazene	Methyl orange
Toluene derivative	Benzyl	RCH2C6H5 RBn		benzyl-	1-(substituent)toluene	Benzyl bromide (1-Bromotoluene)
Carbonate	Carbonate ester	ROCOOR			alkyl carbonate
Carboxylate	Carboxylate	RCOO−		carboxy-	-oate	Sodium acetate (Sodium ethanoate)
Carboxylic acid	Carboxyl	RCOOH		carboxy-	-oic acid	Acetic acid (Ethanoic acid)
Cyanates	Cyanate	ROCN		cyanato-	alkyl cyanate
	Thiocyanate	RSCN		thiocyanato-	alkyl thiocyanate
Ether	Ether	ROR'		alkoxy-	alkyl alkyl ether	Diethyl ether (Ethoxyethane)
Ester	Ester	RCOOR'			-oate	Ethyl butyrate (Ethyl butanoate)
Haloalkane	Halo	RX		halo-	alkyl halide	Chloroethane (Ethyl chloride)
Hydroperoxide (see organic peroxide)	Hydroperoxy	ROOH		hydroperoxy-	alkyl hydroperoxide	Methyl ethyl ketone peroxide
Imine	Primary ketimine	RC(=NH)R'		imino-	-imine
	Secondary ketimine	RC(=NR)R'		imino-	-imine
	Primary aldimine	RC(=NH)H		imino-	-imine
	Secondary aldimine	RC(=NR')H		imino-	-imine
Isocyanide	Isocyanide	RNC		isocyano-	alkyl isocyanide
Isocyanates	Isocyanate	RNCO		isocyanato-	alkyl isocyanate
	Isothiocyanate	RNCS		isothiocyanato-	alkyl isothiocyanate	Allyl isothiocyanate
Ketone	Ketone	RCOR'		keto-, oxo-	-one	Methyl ethyl ketone (Butanone)
Nitrile	Nitrile	RCN		cyano-	alkanenitrile alkyl cyanide	Benzonitrile (Phenyl cyanide)
Nitro compound	Nitro	RNO2		nitro-		Nitromethane
Nitroso compound	Nitroso	RNO		nitroso-		Nitrosobenzene
Peroxide	Peroxy	ROOR		peroxy-	alkyl peroxide	Di-tert-butyl peroxide
Benzene derivative	Phenyl	RC6H5		phenyl-	-benzene	Cumene (2-phenylpropane)
Phosphine	Phosphino	R3P		phosphino-	-phosphane	Methylpropylphosphane
Phosphodiester	Phosphate	HOPO(OR)2		phosphoric acid di(substituent) ester	di(substituent) hydrogenphosphate	DNA
Phosphonic acid	Phosphono	RP(=O)(OH)2		phosphono-	substituent phosphonic acid	Benzylphosphonic acid
Phosphate	Phosphate	ROP(=O)(OH)2		phospho-		Glyceraldehyde 3-phosphate
Pyridine derivative	Pyridyl	RC5H4N		4-pyridyl (pyridin-4-yl) 3-pyridyl (pyridin-3-yl) 2-pyridyl (pyridin-2-yl)	-pyridine	Nicotine
Sulfide		RSR'			di(substituent) sulfide	Dimethyl sulfide
Sulfone	Sulfonyl	RSO2R'		sulfonyl-	di(substituent) sulfone	Dimethyl sulfone (Methylsulfonylmethane)
Sulfonic acid	Sulfo	RSO3H		sulfo-	substituent sulfonic acid	Benzenesulfonic acid
Sulfoxide	Sulfinyl	RSOR'		sulfinyl-	di(substituent) sulfoxide	Diphenyl sulfoxide
Thiol	Sulfhydryl	RSH		mercapto-, sulfanyl-	-thiol	Ethanethiol (Ethyl mercaptan)

Note: The table above is adapted from the Functional Groups table on Wikipedia.

Combining the names of functional groups with the names of the parent alkanes generates a powerful systematic nomenclature for naming organic compounds.

The non-hydrogen atoms of functional groups are always associated with each by covalent bonds, as well as with the rest of the molecule. When the group of atoms is associated with the rest of the molecule primarily by ionic forces, the group is referred to more properly as a polyatomic ion or complex ion. And all of these are called radicals, by a meaning of the term radical that predates the free radical.

The first carbon after the carbon that attaches to the functional group is called the alpha carbon.

These are possible mnemonics for the common functional groups.

Vowels: The vowels "A", "E", and "Y" for Alkane, Alkene, and Alkyne. Remember there is no "I." "O" and "U" would result in awkward pronunciations.

Alcohol: Look for the "C-O-H" in "Alcohol."

Ether: Ethers were anesthetics used in the 1800s. Dr. Kellogg also lived at the same time. Corn Flakes are made by Kellogg's. A rooster or cock (C-O-C) is the cornflake mascot.

Amine: Remember the "N" stands for nitrogen.

Aldehyde: This sounds like "Adelaide," the Australian city. Australia is at the end of the Asian islands, and aldehydes are at the end of the hydrocarbon chain. The "Y" indicates a C=O double bond.

Ketone: Imagine the diagonal strokes of "K" forming the C=O double bond.

Carboxylic Acid: "Box" stands for boxed wine or C-O-H, alcohol. The "Y" indicates a C=O double bond.

Ester: This sounds like "Estelle" George Costanza's mother in the TV show Seinfeld. George's nickname was Koko or Coco. So think of O=C-O-C.

Amide: Amine with a "D". D for double.