Nothing Special   »   [go: up one dir, main page]

skip to main content
10.1145/3365109.3368769acmconferencesArticle/Chapter ViewAbstractPublication PagesbdcatConference Proceedingsconference-collections
short-paper

In-situ Data Analysis System for High Resolution Meteorological Large Eddy Simulation Model

Published: 02 December 2019 Publication History

Abstract

In meteorology, high-resolution simulations using large eddy simulation (LES) models have attracted strong attention. In these LES models, the output data become large, because the spatio-temporal resolution is higher than that of conventional meteorological simulations. Therefore, I/O requirements become much more demanding. In addition, it becomes challenging to analyze the results of these simulations, owing to a large data set size. To overcome these problems, it is necessary to consider hardware and software architectures for in-situ data analysis, for accommodating these I/O requirements. In this study, we propose a large-scale fluid analysis system combining a meteorological LES model and dynamic mode decomposition (DMD). We propose to use a burst buffer as a temporary storage space for storing large-scale output of LES models, and to read these data from DMD. The burst buffer is an all-flash storage system between compute nodes and a parallel file system. The I/O performance of the LES output and DMD input of this workflow is analyzed, and it is shown that the proposed burst buffer is an effective medium for in-situ data analysis.

References

[1]
J. Bent, G. Gibson, G. Grider, B. McClelland, P. Nowoczynski, J. Nunez, M. Polte, and M. Wingate. 2009. PLFS: a checkpoint filesystem for parallel applications. In Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis. 1--12. https://doi.org/10.1145/1654059.1654081
[2]
Wahid Bhimji, Debbie Bard, Melissa Romanus, David Paul, Andrey Ovsyan- nikov, Brian Friesen, Matt Bryson, Joaquin Correa, Glenn K Lockwood, Vakho Tsulaia, et al. 2016. Accelerating science with the NERSC burst buffer early user program. CUG2016 proceedings (2016), 1--15.
[3]
Jose J Camata, Vitor Silva, Patrick Valduriez, Marta Mattoso, and Alvaro LGA Coutinho. 2018. In situ visualization and data analysis for turbidity currents simulation. Computers & Geosciences 110 (2018), 23--31.
[4]
Cray [n. d.]. DataWarp User Guide. ([n. d.]). http://docs.cray.com/books/ S-2558--5204/S2558--5204.pdf
[5]
Rafael Ferreira da Silva, Scott Callaghan, and Ewa Deelman. 2017. On the Use of Burst Buffers for Accelerating Data-intensive Scientific Workflows. In Pro- ceedings of the 12th Workshop on Workflows in Support of Large-Scale Science (WORKS '17). ACM, New York, NY, USA, Article 2, 9 pages. https://doi.org/10. 1145/3150994.3151000
[6]
Christopher S Daley, Devarshi Ghoshal, Glenn K Lockwood, Sudip Dosanjh, La- vanya Ramakrishnan, and Nicholas J Wright. 2016. Performance characteriza- tion of scientificworkflows for the optimal use of burst buffers. In 11thWorkflows in Support of Large-Scale Science, WORKS'16. 69--73.
[7]
David Ellsworth, Bryan Green, Chris Henze, Patrick Moran, and Timothy Sand- strom. 2006. Concurrent visualization in a production supercomputing environ- ment. IEEE Transactions on Visualization and Computer Graphics 12, 5 (2006), 997--1004.
[8]
Ryosaku. Ikeda, Hiroyuki Kusaka, Satoru Iizuka, and Taisuke Boku. 2015. Devel- opment of Urban Meteorological LES model for Thermal Environment at City Scale. In 9th International Conference for Urban Climate. 5.
[9]
JCAHPC [n. d.]. Basic Specification of Oakforest-PACS. ([n. d.]). http://jcahpc. jp/files/OFP-basic.pdf
[10]
Ning Liu, Jason Cope, Philip Carns, Christopher Carothers, Robert Ross, Gary Grider, Adam Crume, and Carlos Maltzahn. 2012. On the role of burst buffers in leadership-class storage systems. In 2012 IEEE 28th Symposium on Mass Stor- age Systems and Technologies (MSST). 1--11. https://doi.org/10.1109/MSST.2012. 6232369
[11]
Lustre [n. d.]. Lustre File System. http://www.lustre.org. ([n. d.]).
[12]
Keigo Matsuda, Ryo Onishi, and Keiko Takahashi. 2018. Tree-crown-resolving large-eddy simulation coupled with three-dimensional radiative transfer model. Journal of Wind Engineering and Industrial Aerodynamics 173 (2018), 53--66.
[13]
Kento Sato, Kathryn Mohror, Adam Moody, Todd Gamblin, Bronis R De Supin- ski, Naoya Maruyama, and Satoshi Matsuoka. 2014. A User-Level InfiniBand- Based File System and Checkpoint Strategy for Burst Buffers. In 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing. 21-- 30. https://doi.org/10.1109/CCGrid.2014.24
[14]
Wolfram Schenck, Salem El Sayed, Maciej Foszczynski, Wilhelm Homberg, and Dirk Pleiter. 2017. Evaluation and Performance Modeling of a Burst Buffer So- lution. SIGOPS Oper. Syst. Rev. 50, 2 (Jan. 2017), 12--26. https://doi.org/10.1145/ 3041710.3041714
[15]
Peter J. Schmid. 2010. Dynamic mode decomposition of numerical and experi- mental data. Journal of Fluid Mechanics 656 (2010), 5--28.
[16]
Unidata [n. d.]. What is chunking? ([n. d.]). https://www.unidata.ucar.edu/ software/netcdf/workshops/2011/nc4chunking/WhatIsChunking.html
[17]
T. Wang, K. Mohror, A. Moody, K. Sato, and W. Yu. 2016. An Ephemeral Burst- Buffer File System for Scientific Applications. In SC '16: Proceedings of the Inter- national Conference for High Performance Computing, Networking, Storage and Analysis. 807--818. https://doi.org/10.1109/SC.2016.68
[18]
Hongfeng Yu, Chaoli Wang, Ray W Grout, Jacqueline H Chen, and Kwan-Liu Ma. 2010. In situ visualization for large-scale combustion simulations. IEEE computer graphics and applications 30, 3 (2010), 45--57.

Cited By

View all
  • (2022)CHFS: Parallel Consistent Hashing File System for Node-local Persistent MemoryInternational Conference on High Performance Computing in Asia-Pacific Region10.1145/3492805.3492807(115-124)Online publication date: 7-Jan-2022
  • (2020)Design of Direct Read from Sparse Segments in MPI-IO2020 IEEE 22nd International Conference on High Performance Computing and Communications; IEEE 18th International Conference on Smart City; IEEE 6th International Conference on Data Science and Systems (HPCC/SmartCity/DSS)10.1109/HPCC-SmartCity-DSS50907.2020.00168(1308-1315)Online publication date: Dec-2020

Index Terms

  1. In-situ Data Analysis System for High Resolution Meteorological Large Eddy Simulation Model

      Recommendations

      Comments

      Please enable JavaScript to view thecomments powered by Disqus.

      Information & Contributors

      Information

      Published In

      cover image ACM Conferences
      BDCAT '19: Proceedings of the 6th IEEE/ACM International Conference on Big Data Computing, Applications and Technologies
      December 2019
      174 pages
      ISBN:9781450370165
      DOI:10.1145/3365109
      Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

      Sponsors

      Publisher

      Association for Computing Machinery

      New York, NY, United States

      Publication History

      Published: 02 December 2019

      Permissions

      Request permissions for this article.

      Check for updates

      Author Tags

      1. burst buffer
      2. in-situ data analysis
      3. meteorology

      Qualifiers

      • Short-paper

      Funding Sources

      • New Energy and Industrial Technology Development Organization
      • Multidisciplinary Cooperative Research Program in CCS, University of Tsukuba
      • JSPS KAKENHI
      • JST CREST
      • Fujitsu Laboratories

      Conference

      UCC '19
      Sponsor:

      Acceptance Rates

      Overall Acceptance Rate 27 of 93 submissions, 29%

      Upcoming Conference

      BDCAT '24

      Contributors

      Other Metrics

      Bibliometrics & Citations

      Bibliometrics

      Article Metrics

      • Downloads (Last 12 months)7
      • Downloads (Last 6 weeks)0
      Reflects downloads up to 22 Sep 2024

      Other Metrics

      Citations

      Cited By

      View all
      • (2022)CHFS: Parallel Consistent Hashing File System for Node-local Persistent MemoryInternational Conference on High Performance Computing in Asia-Pacific Region10.1145/3492805.3492807(115-124)Online publication date: 7-Jan-2022
      • (2020)Design of Direct Read from Sparse Segments in MPI-IO2020 IEEE 22nd International Conference on High Performance Computing and Communications; IEEE 18th International Conference on Smart City; IEEE 6th International Conference on Data Science and Systems (HPCC/SmartCity/DSS)10.1109/HPCC-SmartCity-DSS50907.2020.00168(1308-1315)Online publication date: Dec-2020

      View Options

      Get Access

      Login options

      View options

      PDF

      View or Download as a PDF file.

      PDF

      eReader

      View online with eReader.

      eReader

      Media

      Figures

      Other

      Tables

      Share

      Share

      Share this Publication link

      Share on social media