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Scalable spectral transforms at petascale

Published: 22 July 2013 Publication History

Abstract

In this paper, I describe a framework for spectral transforms called P3DFFT, and its extended features and applications. I discuss the scaling seen on petascale platforms, and directions and some results of the ongoing work on improving performance, such as overlap of communication with computation and hybrid MPI/OpenMP implementation.

References

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J. Bodart. 2009. Large scale simulation of turbulence using a hybrid spectral/finite difference solver, Parallel Computational Fluid Dynamics: Recent Advances and Future Directions, 473--482.
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A. J. Chandy, S. H. Frankel. 2009. Regularization-based sub-grid scale (SGS)models for large eddy simulations (LES) of high-Re decaying isotropic turbulence, J. of Turbulence, 10, 25, p.1.
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D. A. Donzis, P. K. Yeung. 2010. Resolution effects and scaling in numerical simulations of passive scalar mixing in turbulence. Physica D 239, 1278--1287.
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H. Homann et al. 2010. DNS of Finite-Size Particles in Turbulent Flow. "John von Neumann Institute for Computing NIC Symposium 2010 Proceedings, 24 - 25 February 2010: Juelich, Germany", 357--364.
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S. Laizet et al. 2010. A numerical strategy to combine high-order schemes, complex geometry and parallel computing for high resolution DNS of fractal generated turbulence. Computers & Fluids, 39, 3, 471--484.
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N. Peters et al. 2010. Geometrical Properties of Small Scale Turbulence. "John von Neumann Institute for Computing NIC Symposium 2010 Proceedings, 24 - 25 February 2010: Juelich, Germany", 365--371.
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P. Schaeffer et al. 2010. Testing of Model Equations for the Mean Dissipation using Kolmogorov Flow. Flow, Turbulence and Combustion.
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J. Schumacher. 2009. Lagrangian studies in convective turbulence. Phys.Rev. E 79, 056301.
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D. Pekurovsky. 2012. P3DFFT: A Framework For Parallel Computations Of Fourier Transforms In Three Dimensions. SIAM J. for Scientific Computing, vol. 34, No. 4, pp. C192--C209.
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D. A. Donzis, P. K. Yeung, D. Pekurovsky. 2008. Turbulence simulations on O(104) Processors. TeraGrid'08 Conference, Las Vegas, NV, 2008.

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Published In

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XSEDE '13: Proceedings of the Conference on Extreme Science and Engineering Discovery Environment: Gateway to Discovery
July 2013
433 pages
ISBN:9781450321709
DOI:10.1145/2484762
Permission to make digital or hard copies of part or all of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for third-party components of this work must be honored. For all other uses, contact the Owner/Author.

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Association for Computing Machinery

New York, NY, United States

Publication History

Published: 22 July 2013

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Author Tags

  1. community applications
  2. high performance computing (HPC)
  3. numerical libraries
  4. open source software
  5. parallel performance
  6. petascale
  7. scalability
  8. two-dimensional decomposition

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  • Research-article

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XSEDE '13

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Overall Acceptance Rate 129 of 190 submissions, 68%

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