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A two-stage ILP-based droplet routing algorithm for pin-constrained digital microfluidic biochips

Published: 14 March 2010 Publication History

Abstract

With the increasing design complexities, the design of pin-constrained digital microfluidic biochips (PDMFBs) is of practical importance for the emerging marketplace. However, the solution of current pin-count aware technique is inevitably limited by simply adopting it after the droplet routing stage. In this paper, we propose the first droplet routing algorithm for PDMFBs that can integrate pin-count technique with droplet routing stage. Furthermore, our algorithm is capable of simultaneously minimizing the number of control pins, the number of used cells, and the latest arrival time. We first present a basic integer linear programming (ILP) formulation to optimally solve the droplet routing problem for PDMFBs with simultaneous multi-objective optimization. Due to the complexity of this ILP formulation, we also propose a two-stage technique of global routing followed by incremental ILP-based routing to reduce the solution space. To further reduce the runtime, we present a deterministic. ILP formulation that casts the original routing optimization problem into a decision problem, and solve it by a binary solution search method that searches in logarithmic time. Extensive experiments demonstrate that in terms of the number of the control pins, the number of the used cells, and the latest arrival time, we acquire much better achievement than all the state-of-the-art algorithms in any aspect.

References

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[3]
K. F. Böhringer, "Modeling and controlling parallel tasks in droplet based microfluidic systems," IEEE Trans. on CAD, vol. 25, no. 2, pp. 334--344, Feb. 2006.
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M. Cho and D. Z. Pan, "A high-performance droplet routing algorithm for digital microfluidic biochips," IEEE Trans. on CAD, vol. 27, no. 10, pp. 1714--1724, Oct. 2008.
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E. J. Griffith, S. Akella, and M. K. Goldberg, "Performance characterization of a reconfigurable planar-array digital microfluidic system," IEEE Trans. on CAD, vol. 25, no. 2, pp. 345--357, Feb. 2006.
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F. Su, W. Hwang, and K. Chakrabarty, "Droplet routing in the synthesis of digital microfluidic biochips," Proc. IEEE/ACM DATE, pp. 1--6, Mar. 2006.
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T. Xu and K. Chakrabarty, "Droplet-trace-based array partitioning and a pin assignment algorithm for the automated design of digital microfluidic biochips," Proc. IEEE/ACM CODES+ISSS, pp. 112--117, 2006.
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T. Xu and K. Chakrabarty, "Integrated droplet routing in the synthesis of microfluidic biochips," Proc. IEEE/ACM DAC, pp. 948--953, Jun. 2007.
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Cited By

View all
  • (2024)NR-Router+: Enhanced Non-Regular Electrode Routing With Optimal Pin Selection for Electrowetting-on-Dielectric ChipsIEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems10.1109/TCAD.2024.338107043:9(2606-2619)Online publication date: Sep-2024
  • (2022)NR-Router: Non-Regular Electrode Routing with Optimal Pin Selection for Electrowetting-on-Dielectric Chips2022 27th Asia and South Pacific Design Automation Conference (ASP-DAC)10.1109/ASP-DAC52403.2022.9712567(56-61)Online publication date: 17-Jan-2022
  • (2022)A design method based on Bayesian decision for routing-based digital microfluidic biochipsThe Analyst10.1039/D1AN02103F147:6(1076-1085)Online publication date: 2022
  • Show More Cited By

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  1. A two-stage ILP-based droplet routing algorithm for pin-constrained digital microfluidic biochips

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      cover image ACM Conferences
      ISPD '10: Proceedings of the 19th international symposium on Physical design
      March 2010
      220 pages
      ISBN:9781605589206
      DOI:10.1145/1735023
      Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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      Published: 14 March 2010

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      Author Tags

      1. biochip
      2. ilp
      3. microfluidic
      4. routing

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      March 14 - 17, 2010
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      ISPD '10 Paper Acceptance Rate 22 of 70 submissions, 31%;
      Overall Acceptance Rate 62 of 172 submissions, 36%

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      View all
      • (2024)NR-Router+: Enhanced Non-Regular Electrode Routing With Optimal Pin Selection for Electrowetting-on-Dielectric ChipsIEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems10.1109/TCAD.2024.338107043:9(2606-2619)Online publication date: Sep-2024
      • (2022)NR-Router: Non-Regular Electrode Routing with Optimal Pin Selection for Electrowetting-on-Dielectric Chips2022 27th Asia and South Pacific Design Automation Conference (ASP-DAC)10.1109/ASP-DAC52403.2022.9712567(56-61)Online publication date: 17-Jan-2022
      • (2022)A design method based on Bayesian decision for routing-based digital microfluidic biochipsThe Analyst10.1039/D1AN02103F147:6(1076-1085)Online publication date: 2022
      • (2022)An evolutionary algorithm with indirect representation for droplet routing in digital microfluidic biochipsEngineering Applications of Artificial Intelligence10.1016/j.engappai.2022.105305115:COnline publication date: 1-Oct-2022
      • (2021)Interference-Free Design Methodology for Paper-Based Digital Microfluidic BiochipsProceedings of the 26th Asia and South Pacific Design Automation Conference10.1145/3394885.3431609(79-84)Online publication date: 18-Jan-2021
      • (2020)Pin Addressing Method Based on an SVM With a Reliability Constraint in Digital Microfluidic BiochipsIEEE Access10.1109/ACCESS.2020.30349458(199792-199802)Online publication date: 2020
      • (2019)A Complete Routing Simulator for Digital Microfluidic BiochipInternational Journal of Information System Modeling and Design10.4018/IJISMD.201904010410:2(70-85)Online publication date: Apr-2019
      • (2018)Homogeneous droplet routing in DMFBIntegration, the VLSI Journal10.1016/j.vlsi.2017.08.00160:C(74-91)Online publication date: 1-Jan-2018
      • (2018)Pin-Aware Routing and ExtensionsExact Design of Digital Microfluidic Biochips10.1007/978-3-319-90936-3_5(55-85)Online publication date: 12-Jun-2018
      • (2017)BioViz: An Interactive Visualization Engine for the Design of Digital Microfluidic Biochips2017 IEEE Computer Society Annual Symposium on VLSI (ISVLSI)10.1109/ISVLSI.2017.38(170-175)Online publication date: Jul-2017
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