Accelerating minimap2 for long-read sequencing on NUMA multi-core CPU
Abstract
References
Index Terms
- Accelerating minimap2 for long-read sequencing on NUMA multi-core CPU
Recommendations
Accelerating Long Read Alignment on Three Processors
ICPP '19: Proceedings of the 48th International Conference on Parallel ProcessingSequence alignment is a fundamental task in bioinformatics, because many downstream applications rely on it. The recent emergence of the third-generation sequencing technology requires new sequence alignment algorithms that handle longer read lengths as ...
Optimized HPL for AMD GPU and multi-core CPU usage
The installation of the LOEWE-CSC ( http://csc.uni-frankfurt.de/csc/__ __51 ) supercomputer at the Goethe University in Frankfurt lead to the development of a Linpack which can fully utilize the installed AMD Cypress GPUs. At its core, a fast DGEMM for ...
Evaluating multi-core and many-core architectures through accelerating the three-dimensional Lax-Wendroff correction stencil
Wave propagation forward modeling is a widely used computational method in oil and gas exploration. The iterative stencil loops in such problems have broad applications in scientific computing. However, executing such loops can be highly time-consuming, ...
Comments
Please enable JavaScript to view thecomments powered by Disqus.Information & Contributors
Information
Published In
Publisher
Association for Computing Machinery
New York, NY, United States
Publication History
Check for updates
Author Tags
Qualifiers
- Research-article
- Research
- Refereed limited
Conference
Acceptance Rates
Contributors
Other Metrics
Bibliometrics & Citations
Bibliometrics
Article Metrics
- 0Total Citations
- 91Total Downloads
- Downloads (Last 12 months)60
- Downloads (Last 6 weeks)3
Other Metrics
Citations
View Options
Get Access
Login options
Check if you have access through your login credentials or your institution to get full access on this article.
Sign inFull Access
View options
View or Download as a PDF file.
PDFeReader
View online with eReader.
eReaderHTML Format
View this article in HTML Format.
HTML Format