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A Deep Learning Approach to Phase-Space Analysis for Seizure Detection

Published: 04 September 2019 Publication History

Abstract

Many epileptic patients do not respond to medication or surgery. Recent technology has demonstrated that closed-loop responsive neurostimulation therapy is a realistic treatment for epileptic patients. However, ambulatory care of epileptic patients requires a highly accurate automated seizure detection algorithm. In this research, we implement a method for epileptic seizure detection based on nonlinear phase space analysis and deep convolutional neural networks (CNN). The underlying dynamics of scalp electroencephalography (sEEG) are extracted through time delay embedding and phase-space reconstruction. These features are used for training a CNN with a regression output to predict time until seizure. In experiments using EEG data collected in clinical environments from forty patients, our deep learning approach achieved high accuracy in predicting time until seizure onset, with a root mean squared error (RMSE) of 14.1 minutes and adjusted R-squared of .95 on out of sample testing data.

References

[1]
U Rajendra Acharya, Shu Lih Oh, Yuki Hagiwara, Jen Hong Tan, and Hojjat Adeli. 2017. Deep convolutional neural network for the automated detection and diagnosis of seizure using EEG signals. Computers in biology and medicine (2017).
[2]
Felix Achilles, Federico Tombari, Vasileios Belagiannis, Anna Mira Loesch, Soheyl Noachtar, and Nassir Navab. 2016. Convolutional neural networks for real-time epileptic seizure detection. Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization (2016), 1--6.
[3]
Ralph G Andrzejak, Klaus Lehnertz, Florian Mormann, Christoph Rieke, Peter David, and Christian E Elger. 2001. Indications of nonlinear deterministic and finite-dimensional structures in time series of brain electrical activity: Dependence on recording region and brain state. Physical Review E, Vol. 64, 6 (2001), 061907.
[4]
Andreas Antoniades, Loukianos Spyrou, Clive Cheong Took, and Saeid Sanei. 2016. Deep learning for epileptic intracranial EEG data. Machine Learning for Signal Processing (MLSP), 2016 IEEE 26th International Workshop on. IEEE, 1--6.
[5]
William S Ashbee, LM Hively, and JT McDonald. 2014. Nonlinear Epilepsy Forewarning by Support Vector Machines. Epilepsy Topics. InTech.
[6]
Gregory K Bergey, Martha J Morrell, Eli M Mizrahi, Alica Goldman, David King-Stephens, Dileep Nair, Shraddha Srinivasan, Barbara Jobst, Robert E Gross, Donald C Shields, and others. 2015. Long-term treatment with responsive brain stimulation in adults with refractory partial seizures. Neurology, Vol. 84, 8 (2015), 810--817.
[7]
Meir Bialer, Svein I Johannessen, René H Levy, Emilio Perucca, Torbjörn Tomson, H Steve White, and Matthias J Koepp. 2017. Seizure detection and neuromodulation: A summary of data presented at the XIII conference on new antiepileptic drug and devices (EILAT XIII). Epilepsy research, Vol. 130 (2017), 27--36.
[8]
Javad Birjandtalab, Mehrdad Heydarzadeh, and Mehrdad Nourani. 2017. Automated EEG-Based Epileptic Seizure Detection Using Deep Neural Networks. In Healthcare Informatics (ICHI), 2017 IEEE International Conference on. IEEE, 552--555.
[9]
Paul R Carney, Stephen Myers, and James D Geyer. 2011. Seizure prediction: methods. Epilepsy & Behavior, Vol. 22 (2011), S94--S101.
[10]
Mark J Cook, Terence J O'Brien, Samuel F Berkovic, Michael Murphy, Andrew Morokoff, Gavin Fabinyi, Wendyl D'Souza, Raju Yerra, John Archer, Lucas Litewka, and others. 2013. Prediction of seizure likelihood with a long-term, implanted seizure advisory system in patients with drug-resistant epilepsy: a first-in-man study. The Lancet Neurology, Vol. 12, 6 (2013), 563--571.
[11]
Epilepsy Foundation of Michigan. 2011. http://www.epilepsymichigan.org/. Website. (2011).
[12]
Meysam Golmohammadi, Saeedeh Ziyabari, Vinit Shah, Silvia Lopez de Diego, Iyad Obeid, and Joseph Picone. 2017. Deep Architectures for Automated Seizure Detection in Scalp EEGs. arXiv preprint arXiv:1712.09776 (2017).
[13]
Yongfu Hao, Hui Ming Khoo, Nicolas von Ellenrieder, Natalja Zazubovits, and Jean Gotman. 2018. DeepIED: An epileptic discharge detector for EEG-fMRI based on deep learning. NeuroImage: Clinical, Vol. 17 (2018), 962--975.
[14]
Kaiming He, Zhang Xiangyu, Ren Shaoqing, and Sun Jian. 2016. Deep residual learning for image recognition. In Proceedings of the IEEE conference on computer vision and pattern recognition, Vol. 770--778 (2016).
[15]
Bruce Henry, Nigel Lovell, and Fernando Camacho. 2012. Nonlinear dynamics time series analysis. Nonlinear Biomedical Signal Processing: Dynamic Analysis and Modeling, Volume 2 (2012), 1--39.
[16]
LM Hively. 2009. Prognostication of helicopter failure. ORNL/TM-2009, Vol. 244 (2009).
[17]
LM Hively, NE Clapp, CS Daw, WF Lawkins, and ML Eisenstadt. 1995. Nonlinear analysis of EEG for epileptic seizures. ORNL/TM-12961, Oak Ridge National Laboratory, Oak Ridge, TN (1995).
[18]
Lee M Hively, J Todd McDonald, Nancy Munro, and Emily Cornelius. 2013. Forewarning of epileptic events from scalp EEG . Biomedical Sciences and Engineering Conference (BSEC), 2013. IEEE, 1--4.
[19]
Lee M Hively and Esmond G Ng. 1998. Integrated method for chaotic time series analysis. (Sept. 29 1998). US Patent 5,815,413.
[20]
Ramy Hussein, Hamid Palangi, Rabab Ward, and Z Jane Wang. 2018. Epileptic Seizure Detection: A Deep Learning Approach. arXiv preprint arXiv:1803.09848 (2018).
[21]
N Kannathal, LC Min, UR Acharya, and PK Sadasivan. 2006. Erratum: Entropies for detection of epilepsy in EEG (Computer Methods and Programs in Biomedicine (2005) 80 (187--194)
[22]
Holger Kantz and Thomas Schreiber. 2004. Nonlinear time series analysis ., Vol. 7. Cambridge university press.
[23]
Yann LeCun, Yoshua Bengio, and Geoffrey Hinton. 2015. Deep learning. nature, Vol. 521, 7553 (2015), 436.
[24]
Ivars Namat=evs. 2017. Deep Convolutional Neural Networks: Structure, Feature Extraction and Training. Information Technology and Management Science, Vol. 20, 1 (2017), 40--47.
[25]
Hamidreza Namazi, Vladimir V Kulish, Jamal Hussaini, Jalal Hussaini, Ali Delaviz, Fatemeh Delaviz, Shaghayegh Habibi, and Sara Ramezanpoor. 2016. A signal processing based analysis and prediction of seizure onset in patients with epilepsy. Oncotarget, Vol. 7, 1 (2016), 342.
[26]
World Health Orginization. 2018. World Health Organization. http://www.who.int/mediacentre/factsheets/fs999/en/. Website. (2018).
[27]
Alison O'Shea, Gordon Lightbody, Geraldine Boylan, and Andriy Temko. 2017. Neonatal Seizure Detection using Convolutional Neural Networks. arXiv preprint arXiv:1709.05849 (2017).
[28]
Ivan Osorio, Hitten P Zaveri, Mark G Frei, and Susan Arthurs. 2016. Epilepsy: the intersection of neurosciences, biology, mathematics, engineering, and physics . CRC press.
[29]
Alberto Pauletti, Gaetano Terrone, Tawfeeq Shekh-Ahmad, Alessia Salamone, Teresa Ravizza, Massimo Rizzi, Anna Pastore, Rosaria Pascente, Li-Ping Liang, Bianca R Villa, and others. 2017. Targeting oxidative stress improves disease outcomes in a rat model of acquired epilepsy. Brain (2017).
[30]
J Chris Sackellares. 2008. Seizure prediction. Epilepsy Currents, Vol. 8, 3 (2008), 55--59.
[31]
Robin Tibor Schirrmeister, Jost Tobias Springenberg, Lukas Dominique Josef Fiederer, Martin Glasstetter, Katharina Eggensperger, Michael Tangermann, Frank Hutter, Wolfram Burgard, and Tonio Ball. 2017. Deep learning with convolutional neural networks for EEG decoding and visualization. Human brain mapping, Vol. 38, 11 (2017), 5391--5420.
[32]
Floris Takens. 1981. Detecting strange attractors in turbulence. Dynamical systems and turbulence, Warwick 1980. Springer, 366--381.
[33]
Pierre Thodoroff, Joelle Pineau, and Andrew Lim. 2016. Learning robust features using deep learning for automatic seizure detection. In Machine Learning for Healthcare Conference. 178--190.
[34]
Wilson Truccolo, Jacob A Donoghue, Leigh R Hochberg, Emad N Eskandar, Joseph R Madsen, William S Anderson, Emery N Brown, Eric Halgren, and Sydney S Cash. 2011. Single-neuron dynamics in human focal epilepsy. Nature neuroscience, Vol. 14, 5 (2011), 635--641.
[35]
JT Turner, Adam Page, Tinoosh Mohsenin, and Tim Oates. 2014. Deep belief networks used on high resolution multichannel electroencephalography data for seizure detection. In 2014 AAAI Spring Symposium Series .
[36]
Ihsan Ullah, Muhammad Hussain, Emad-ul-Haq Qazi, and Hatim Aboalsamh. 2018. An Automated System for Epilepsy Detection using EEG Brain Signals based on Deep Learning Approach. arXiv preprint arXiv:1801.05412 (2018).
[37]
Ye Yuan, Guangxu Xun, Kebin Jia, and Aidong Zhang. 2017. A multi-view deep learning method for epileptic seizure detection using short-time fourier transform. In Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. ACM, 213--222.
[38]
Filippo Zappasodi, Elzbieta Olejarczyk, Laura Marzetti, Giovanni Assenza, Vittorio Pizzella, and Franca Tecchio. 2014. Fractal dimension of EEG activity senses neuronal impairment in acute stroke. PLoS One, Vol. 9, 6 (2014), e100199.

Cited By

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  • (2024)A scheme combining feature fusion and hybrid deep learning models for epileptic seizure detection and predictionScientific Reports10.1038/s41598-024-67855-414:1Online publication date: 23-Jul-2024
  • (2022)A comprehensive survey of deep learning in the field of medical imaging and medical natural language processing: Challenges and research directionsJournal of King Saud University - Computer and Information Sciences10.1016/j.jksuci.2021.01.00734:8(5083-5099)Online publication date: Sep-2022
  • (2020)Effectiveness of gamification for the rehabilitation of neurodegenerative disordersChaos, Solitons & Fractals10.1016/j.chaos.2020.110192140(110192)Online publication date: Nov-2020

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    cover image ACM Conferences
    BCB '19: Proceedings of the 10th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics
    September 2019
    716 pages
    ISBN:9781450366663
    DOI:10.1145/3307339
    Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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    Published: 04 September 2019

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    Author Tags

    1. deep learning
    2. epilepsy
    3. phase-space
    4. seizure detection

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    View all
    • (2024)A scheme combining feature fusion and hybrid deep learning models for epileptic seizure detection and predictionScientific Reports10.1038/s41598-024-67855-414:1Online publication date: 23-Jul-2024
    • (2022)A comprehensive survey of deep learning in the field of medical imaging and medical natural language processing: Challenges and research directionsJournal of King Saud University - Computer and Information Sciences10.1016/j.jksuci.2021.01.00734:8(5083-5099)Online publication date: Sep-2022
    • (2020)Effectiveness of gamification for the rehabilitation of neurodegenerative disordersChaos, Solitons & Fractals10.1016/j.chaos.2020.110192140(110192)Online publication date: Nov-2020

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