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Hidden Markov Random Field model and BFGS algorithm for Brain Image Segmentation

Published: 22 November 2016 Publication History

Abstract

Brain MR images segmentation has attracted a particular focus in medical imaging. The automatic image analysis and interpretation became a necessity. Segmentation is one of the key operations to provide a crucial decision support to physicians. Its goal is to simplify the representation of an image into items meaningful and easier to analyze. Hidden Markov Random Fields (HMRF) provide an elegant way to model the segmentation problem. This model leads to the minimization problem of a function. BFGS (Broyden-Fletcher-Goldfarb-Shanno algorithm) is one of the most powerful methods to solve unconstrained optimization problem. This paper presents how we combine HMRF and BFGS to achieve a good segmentation. Brain image segmentation results are evaluated on ground-truth images, using the Dice coefficient.

References

[1]
Samy Ait-Aoudia, El-Hachemi Guerrout, and Ramdane Mahiou. 2014. Medical Image Segmentation Using Particle Swarm Optimization. In 2014 18th International Conference on Information Visualisation. IEEE, 287--291.
[2]
Mohamed Mokhtar Bendib, Hayet Farida Merouani, and Fatma Diaba. 2015. Automatic segmentation of brain mri through stationary wavelet transform and random forests. Pattern Analysis and Applications 18, 4 (2015), 829--843.
[3]
CC Benson, VL Lajish, and Kumar Rajamani. 2015. Brain tumor extraction from MRI brain images using marker based watershed algorithm. In Advances in Computing, Communications and Informatics (ICACCI), 2015 International Conference on. IEEE, 318--323.
[4]
Stephen Boyd and Lieven Vandenberghe. 2004. Convex optimization. Cambridge university press.
[5]
Tony F Chan, Luminita Vese, and others. 2001. Active contours without edges. Image processing, IEEE transactions on 10, 2 (2001), 266--277.
[6]
Yunjie Chen, Hui Zhang, Yuhui Zheng, Byeungwoo Jeon, and QM Jonathan Wu. 2016. An improved anisotropic hierarchical fuzzy c-means method based on multivariate student t-distribution for brain MRI segmentation. Pattern Recognition 60 (2016), 778--792.
[7]
Chris A Cocosco, Vasken Kollokian, Remi K-S Kwan, G Bruce Pike, and Alan C Evans. 1997. Brainweb: Online interface to a 3D MRI simulated brain database. In NeuroImage. Citeseer.
[8]
Lee R Dice. 1945. Measures of the amount of ecologic association between species. Ecology 26, 3 (1945), 297--302.
[9]
David Eberly. 2003. Derivative approximation by finite differences. Magic Software, Inc (2003).
[10]
Stuart Geman and Donald Geman. 1984. Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. Pattern Analysis and Machine Intelligence, IEEE Transactions on 6 (1984), 721--741.
[11]
El-Hachemi Guerrout, Samy Ait-Aoudia, Dominique Michelucci, and Ramdane Mahiou. 2016. Hidden Markov Random Fields and Direct Search Methods for Medical Image Segmentation. In Proceedings of the 5th International Conference on Pattern Recognition Applications and Methods. 154--161.
[12]
El-Hachemi Guerrout, Ramdane Mahiou, and Samy Ait-Aoudia. 2014. Hidden Markov Random Fields and Swarm Particles: A Winning Combination in Image Segmentation. IERI Procedia 10 (2014), 19--24.
[13]
John M Hammersley and Peter Clifford. 1971. Markov fields on finite graphs and lattices. (1971).
[14]
Sean Ho, Lizabeth Bullitt, and Guido Gerig. 2002. Level-set evolution with region competition: automatic 3-D segmentation of brain tumors. In Pattern Recognition, 2002. Proceedings. 16th International Conference on, Vol. 1. IEEE, 532-535.
[15]
Shang-Ling Jui, Shichen Zhang, Weilun Xiong, Fangxiaoqi Yu, Mingjian Fu, Dongmei Wang, Aboul Ella Hassanien, and Kai Xiao. 2016. Brain MRI Tumor Segmentation with 3D Intracranial Structure Deformation Features. IEEE Intelligent Systems 31, 2 (2016), 66--76.
[16]
Sasi Kumar and others. 2007. Skull stripping and automatic segmentation of brain MRI using seed growth and threshold techniques. In 2007 International Conference on Intelligent and Advanced Systems. 422--426.
[17]
Geng-Cheng Lin, Wen-June Wang, Chung-Chia Kang, and Chuin-Mu Wang. 2012. Multispectral MR images segmentation based on fuzzy knowledge and modified seeded region growing. Magnetic resonance imaging 30, 2 (2012), 230--246.
[18]
Mengyuan Liu, Averi Kitsch, Steven Miller, Vann Chau, Kenneth Poskitt, Francois Rousseau, Dennis Shaw, and Colin Studholme. 2016. Patch-based augmentation of Expectation-Maximization for brain MRI tissue segmentation at arbitrary age after premature birth. NeuroImage 127 (2016), 387--408.
[19]
Hassan Masoumi, Alireza Behrad, Mohammad Ali Pourmina, and Alireza Roosta. 2012. Automatic liver segmentation in MRI images using an iterative watershed algorithm and artificial neural network. Biomedical Signal Processing and Control 7, 5 (2012), 429--437.
[20]
Tim McInerney and Demetri Terzopoulos. 1996. Deformable models in medical image analysis: a survey. Medical image analysis 1, 2 (1996), 91--108.
[21]
Prem Natarajan, Nikhil Krishnan, Natasha Sandeep Kenkre, Saldanha Nancy, and Bhanu Pratap Singh. 2012. Tumor detection using threshold operation in MRI brain images. In Computational Intelligence & Computing Research (ICCIC), 2012 IEEE International Conference on. IEEE, 1--4.
[22]
Eloy Roura, Arnau Oliver, Mariano Cabezas, Joan C Vilanova, Àlex Rovira, Lluís Ramió-Torrentà, and Xavier Lladó. 2014. MARGA: multispectral adaptive region growing algorithm for brain extraction on axial MRI. Computer methods and programs in biomedicine 113, 2 (2014), 655--673.
[23]
David F Shanno. 1985. On broyden-fletcher-goldfarb-shanno method. Journal of Optimization Theory and Applications 46, 1 (1985), 87--94.
[24]
Robert H Swendsen and Jian-Sheng Wang. 1987. Nonuniversal critical dynamics in Monte Carlo simulations. Physical review letters 58, 2 (1987), 86.
[25]
Richard Szeliski, Ramin Zabih, Daniel Scharstein, Olga Veksler, Vladimir Kolmogorov, Aseem Agarwala, Marshall Tappen, and Carsten Rother. 2008. A comparative study of energy minimization methods for markov random fields with smoothness-based priors. Pattern Analysis and Machine Intelligence, IEEE Transactions on 30, 6 (2008), 1068--1080.
[26]
Li Wang, Feng Shi, Gang Li, Yaozong Gao, Weili Lin, John H Gilmore, and Dinggang Shen. 2014. Segmentation of neonatal brain MR images using patch-driven level sets. NeuroImage 84 (2014), 141--158.
[27]
Paul P Wyatt and J Alison Noble. 2003. MAP MRF joint segmentation and registration of medical images. Medical Image Analysis 7, 4 (2003), 539--552.
[28]
Sahar Yousefi, Reza Azmi, and Morteza Zahedi. 2012. Brain tissue segmentation in MR images based on a hybrid of MRF and social algorithms. Medical image analysis 16, 4 (2012), 840--848.
[29]
Yongyue Zhang, Michael Brady, and Stephen Smith. 2001. Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm. Medical Imaging, IEEE Transactions on 20, 1 (2001), 45--57.
[30]
Ming Zhao, Hsiao-Yu Lin, Chih-Hung Yang, Chih-Yu Hsu, Jeng-Shyang Pan, and Meng-Ju Lin. 2015. Automatic threshold level set model applied on MRI image segmentation of brain tissue. Appl. Math 9, 4 (2015), 1971--1980.

Cited By

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  • (2018)Conjugate Gradient Method for Brain Magnetic Resonance Images SegmentationComputational Intelligence and Its Applications10.1007/978-3-319-89743-1_48(561-572)Online publication date: 12-Apr-2018

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Information

Published In

cover image ACM Other conferences
MedPRAI-2016: Proceedings of the Mediterranean Conference on Pattern Recognition and Artificial Intelligence
November 2016
163 pages
ISBN:9781450348768
DOI:10.1145/3038884
  • General Chairs:
  • Chawki Djeddi,
  • Imran Siddiqi,
  • Akram Bennour,
  • Program Chairs:
  • Youcef Chibani,
  • Haikal El Abed
© 2016 Association for Computing Machinery. ACM acknowledges that this contribution was authored or co-authored by an employee, contractor or affiliate of a national government. As such, the Government retains a nonexclusive, royalty-free right to publish or reproduce this article, or to allow others to do so, for Government purposes only.

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Association for Computing Machinery

New York, NY, United States

Publication History

Published: 22 November 2016

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Author Tags

  1. Brain image segmentation
  2. Broyden-Fletcher-Goldfarb-Shanno algorithm
  3. Dice coefficient
  4. Hidden Markov Random Field

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Cited By

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  • (2018)Conjugate Gradient Method for Brain Magnetic Resonance Images SegmentationComputational Intelligence and Its Applications10.1007/978-3-319-89743-1_48(561-572)Online publication date: 12-Apr-2018

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