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Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM

Authors:

Lawrence A. Kelley,

Robert M. MacCallum,

Michael J. E. SternbergAuthors Info & Claims

RECOMB '99: Proceedings of the third annual international conference on Computational molecular biology

Pages 218 - 225

https://doi.org/10.1145/299432.299486

Published: 01 April 1999 Publication History

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Cited By

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Punetha ASarkar PNimkar SSharma HKNR YNagaraj S(2018)Structural Bioinformatics: Life Through The 3D GlassesBioinformatics: Sequences, Structures, Phylogeny10.1007/978-981-13-1562-6_10(191-253)Online publication date: 14-Oct-2018
https://doi.org/10.1007/978-981-13-1562-6_10
Wang YYou ZLi LHuang YYi H(2017)Detection of Interactions between Proteins by Using Legendre Moments Descriptor to Extract Discriminatory Information Embedded in PSSMMolecules10.3390/molecules2208136622:8(1366)Online publication date: 18-Aug-2017
https://doi.org/10.3390/molecules22081366
Das PBasu ABiswas APoddar DAndrews JBarik SKomar AMazumder B(2013)Insights into the Mechanism of Ribosomal Incorporation of Mammalian L13a Protein during Ribosome BiogenesisMolecular and Cellular Biology10.1128/MCB.00250-1333:15(2829-2842)Online publication date: 20-May-2013
https://doi.org/10.1128/MCB.00250-13
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Index Terms

Recognition of remote protein homologies using three-dimensional information to generate a position specific scoring matrix in the program 3D-PSSM
1. Applied computing
  1. Life and medical sciences
2. Information systems
  1. Information retrieval
    1. Information retrieval query processing
  2. Information systems applications

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Published In

RECOMB '99: Proceedings of the third annual international conference on Computational molecular biology

April 1999

332 pages

ISBN:1581130694

DOI:10.1145/299432

Chairmen:
Sorin Istrail
Sandia National Labs
,
Pavel Pevzner
Univ. of Southern California, Los Angeles
,
Michael Waterman
Univ. of Southern California, Los Angeles

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Publication History

Published: 01 April 1999

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RECOMB99: 3rd International Conference on Computational Molecular Biology

April 11 - 14, 1999

Lyon, France

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Cited By

View all

Punetha ASarkar PNimkar SSharma HKNR YNagaraj S(2018)Structural Bioinformatics: Life Through The 3D GlassesBioinformatics: Sequences, Structures, Phylogeny10.1007/978-981-13-1562-6_10(191-253)Online publication date: 14-Oct-2018
https://doi.org/10.1007/978-981-13-1562-6_10
Wang YYou ZLi LHuang YYi H(2017)Detection of Interactions between Proteins by Using Legendre Moments Descriptor to Extract Discriminatory Information Embedded in PSSMMolecules10.3390/molecules2208136622:8(1366)Online publication date: 18-Aug-2017
https://doi.org/10.3390/molecules22081366
Das PBasu ABiswas APoddar DAndrews JBarik SKomar AMazumder B(2013)Insights into the Mechanism of Ribosomal Incorporation of Mammalian L13a Protein during Ribosome BiogenesisMolecular and Cellular Biology10.1128/MCB.00250-1333:15(2829-2842)Online publication date: 20-May-2013
https://doi.org/10.1128/MCB.00250-13
Panchenko ABryant S(2009)A comparison of position‐specific score matrices based on sequence and structure alignmentsProtein Science10.1110/ps.1990211:2(361-370)Online publication date: 13-Apr-2009
https://doi.org/10.1110/ps.19902
Herve du Penhoat CAtreya HShen YLiu GActon TXiao RLi ZMurray DMontelione GSzyperski T(2009) The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold Protein Science10.1110/ps.0358920413:5(1407-1416)Online publication date: Jan-2009
https://doi.org/10.1110/ps.03589204
Davis AGuseva NBall BHeusel J(2008)Characterization of Murine Cytomegalovirus m157 from Infected Cells and Identification of Critical Residues Mediating Recognition by the NK Cell Receptor Ly49HThe Journal of Immunology10.4049/jimmunol.181.1.265181:1(265-275)Online publication date: 1-Jul-2008
https://doi.org/10.4049/jimmunol.181.1.265
Pons THernández LBatista FChinea G(2008)Prediction of a common β‐propeller catalytic domain for fructosyltransferases of different origin and substrate specificityProtein Science10.1110/ps.9.11.22859:11(2285-2291)Online publication date: 31-Dec-2008
https://doi.org/10.1110/ps.9.11.2285
Ellis KClough BSaldanha JWilson R(2008)Nifs and Sufs in malariaMolecular Microbiology10.1046/j.1365-2958.2001.02588.x41:5(973-981)Online publication date: 7-Jul-2008
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Datta SMcQuillin ARizig MBlaveri EThirumalai SKalsi GLawrence JBass NPuri VChoudhury KPimm JCrombie CFraser GWalker NCurtis DZvelebil MPereira AKandaswamy RSt Clair DGurling H(2008)A threonine to isoleucine missense mutation in the pericentriolar material 1 gene is strongly associated with schizophreniaMolecular Psychiatry10.1038/mp.2008.12815:6(615-628)Online publication date: 2-Dec-2008
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Frankenberg SSmith LGreenfield AZernicka-Goetz M(2007)Novel gene expression patterns along the proximo-distal axis of the mouse embryo before gastrulationBMC Developmental Biology10.1186/1471-213X-7-87:1Online publication date: 15-Feb-2007
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Ranking docked models of protein-protein complexes using predicted partner-specific protein-protein interfaces: a preliminary study

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