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BioTRON: a biological workflow management system

Published: 21 March 2011 Publication History

Abstract

Bioinformatics tasks may become very complex and usually require to manually integrate both data and results from different knowledge sources and tools. In this scenario, an integrated environment for designing and executing complex biological workflows is a must. Even though several efforts are trying to cope with this aspects, they mostly focus on gene or protein sequence analysis underestimating more complex biological data such as molecular interaction data. The aim of this paper is to present the BioTRON system, which supports biologists in the various steps necessary to perform complex biological tasks such as biological network comparison. BioTRON also features a mechanism to automatically integrate even existing on-line Web services. We present the BioTRON architecture along with a real example, which shows the suitability of the tool.

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cover image ACM Conferences
SAC '11: Proceedings of the 2011 ACM Symposium on Applied Computing
March 2011
1868 pages
ISBN:9781450301138
DOI:10.1145/1982185
Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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Publication History

Published: 21 March 2011

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Author Tags

  1. bioinformatics
  2. data integration
  3. web services
  4. workflows

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SAC'11
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SAC'11: The 2011 ACM Symposium on Applied Computing
March 21 - 24, 2011
TaiChung, Taiwan

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Overall Acceptance Rate 1,650 of 6,669 submissions, 25%

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