research-article

B-Fabric: the Swiss Army Knife for life sciences

Authors:

Simon Barkow-Oesterreicher,

Hubert Rehrauer,

Ralph SchlapbachAuthors Info & Claims

EDBT '10: Proceedings of the 13th International Conference on Extending Database Technology

Pages 717 - 720

https://doi.org/10.1145/1739041.1739135

Published: 22 March 2010 Publication History

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Abstract

This paper demonstrates B-Fabric, an all-in-one solution for two major purposes in life sciences. On the one hand, it is a system for the integrated management of experimental data and scientific annotations. On the other hand, it is a system infrastructure supporting on-the fly coupling of user applications, and thus serving as extensible platform for fast-paced, cutting-edge, collaborative research.

References

[1]

C. Türker, E. Stolte, D. Joho, and R. Schlapbach: B-Fabric: A Data and Application Integration Framework for Life Sciences Research. Data Integration in the Life Sciences, DILS 2007, LNCS 4544, pp. 37--47. Springer-Verlag, 2007.

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[2]

B-Fabric. http://www.bfabric.org/

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Morozova VPellegata DCharles RGertsch J(2025)Carboxylesterase 1-mediated endocannabinoid metabolism in skin: role in melanoma progression in BRafV600E/Pten−/− miceCancer & Metabolism10.1186/s40170-025-00378-213:1Online publication date: 11-Feb-2025
https://doi.org/10.1186/s40170-025-00378-2
Oborská-Oplová MGeiger AMichel EKlingauf-Nerurkar PDennerlein SBykov YAmodeo SSchneider ASchuldiner MRehling PPanse V(2025)An avoidance segment resolves a lethal nuclear–mitochondrial targeting conflict during ribosome assemblyNature Cell Biology10.1038/s41556-024-01588-427:2(336-346)Online publication date: 31-Jan-2025
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McIntyre ATschan AMeyer KWalser SRai AFujita KPelkmans L(2025)Phosphorylation of a nuclear condensate regulates cohesion and mRNA retentionNature Communications10.1038/s41467-024-55469-316:1Online publication date: 4-Jan-2025
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B-Fabric: the Swiss Army Knife for life sciences
1. Applied computing
  1. Life and medical sciences

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Information

Published In

EDBT '10: Proceedings of the 13th International Conference on Extending Database Technology

March 2010

741 pages

ISBN:9781605589459

DOI:10.1145/1739041

Editors:
Ioana Manolescu
INRIA, France
,
Stefano Spaccapietra
EPFL, Switzerland
,
Jens Teubner
ETH Zurich, Switzerland
,
Masaru Kitsuregawa
Tokyo University, Japan
,
Alain Leger
Orange - France Telecom R&D, France
,
Felix Naumann
Hasso Plattner Institute, Germany
,
Anastasia Ailamaki
EPFL, Switzerland
,
Fatma Ozcan
IBM Almaden Research Center

Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

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Association for Computing Machinery

New York, NY, United States

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Published: 22 March 2010

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EDBT/ICDT '10

EDBT/ICDT '10: EDBT/ICDT '10 joint conference

March 22 - 26, 2010

Lausanne, Switzerland

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Overall Acceptance Rate 7 of 10 submissions, 70%

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Morozova VPellegata DCharles RGertsch J(2025)Carboxylesterase 1-mediated endocannabinoid metabolism in skin: role in melanoma progression in BRafV600E/Pten−/− miceCancer & Metabolism10.1186/s40170-025-00378-213:1Online publication date: 11-Feb-2025
https://doi.org/10.1186/s40170-025-00378-2
Oborská-Oplová MGeiger AMichel EKlingauf-Nerurkar PDennerlein SBykov YAmodeo SSchneider ASchuldiner MRehling PPanse V(2025)An avoidance segment resolves a lethal nuclear–mitochondrial targeting conflict during ribosome assemblyNature Cell Biology10.1038/s41556-024-01588-427:2(336-346)Online publication date: 31-Jan-2025
https://doi.org/10.1038/s41556-024-01588-4
McIntyre ATschan AMeyer KWalser SRai AFujita KPelkmans L(2025)Phosphorylation of a nuclear condensate regulates cohesion and mRNA retentionNature Communications10.1038/s41467-024-55469-316:1Online publication date: 4-Jan-2025
https://doi.org/10.1038/s41467-024-55469-3
Miró-Vinyals CEmmert SGrammbitter GJud AKockmann TRivera-Fuentes P(2025)Characterization of the Glutathione Redox State in the Golgi ApparatusRedox Biology10.1016/j.redox.2025.103560(103560)Online publication date: Feb-2025
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Edelmann MCouperus SRodríguez-Robles ERivollier JRoberts TPanke SMarlière P(2024) Evolving Escherichia coli to use a tRNA with a non-canonical fold as an adaptor of the genetic code Nucleic Acids Research10.1093/nar/gkae80652:20(12650-12668)Online publication date: 24-Sep-2024
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Looser ZFaik ZRavotto LZanker HJung RWerner HRuhwedel TMöbius WBergles DBarros LNave KWeber BSaab A(2024)Oligodendrocyte–axon metabolic coupling is mediated by extracellular K+ and maintains axonal healthNature Neuroscience10.1038/s41593-023-01558-3Online publication date: 24-Jan-2024
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Pagella PLai CPirenne LCantù CSchwab MMitsiadis T(2024)An unexpected role of Nogo-A as regulator of tooth enamel formationInternational Journal of Oral Science10.1038/s41368-024-00323-x16:1Online publication date: 20-Oct-2024
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Car IDittmann AVasieva OBočkor LGrbčić PPiteša NKlobučar MKraljević Pavelić SSedić M(2023)Ezrin Inhibition Overcomes Acquired Resistance to Vemurafenib in BRAFV600E-Mutated Colon Cancer and Melanoma Cells In VitroInternational Journal of Molecular Sciences10.3390/ijms24161290624:16(12906)Online publication date: 17-Aug-2023
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Trilla-Fuertes LGámez-Pozo APrado-Vázquez GLópez-Vacas RSoriano VGaricano FLecumberri MRodríguez de la Borbolla MMajem MPérez-Ruiz EGonzález-Cao MOramas JMagdaleno AFra JMartín-Carnicero ACorral MPuértolas TRamos-Ruiz RDittmann ANanni PFresno Vara JEspinosa E(2023)Multi-omics Characterization of Response to PD-1 Inhibitors in Advanced MelanomaCancers10.3390/cancers1517440715:17(4407)Online publication date: 3-Sep-2023
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