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proSQLite: Prolog File Based Databases via an SQLite Interface

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Practical Aspects of Declarative Languages (PADL 2013)

Part of the book series: Lecture Notes in Computer Science ((LNPSE,volume 7752))

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Abstract

We present a succinct yet powerful interface library to the SQLite database system. The single file, server-less approach of SQLite along with the natural integration of relational data within Prolog, render the library a useful addition to the existing database libraries in modern open-source engines. We detail the architecture and predicates of the library and provide example deployment scenarios. A simple bioinformatics example is presented throughout to illustrate proSQLitet’s main functions. Finally, this paper discusses the strengths of the system and highlights possible extensions.

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References

  1. Allen, G., Owens, M.: The Definitive Guide to SQLite (2010)

    Google Scholar 

  2. Angelopoulos, N., Costa, V.S., Camacho, R., Wielemaker, J., Azevedo, J., Wessels, L.: Integrative statistics for logical reasoning (2012), Conditional accept PADL 2013

    Google Scholar 

  3. Angelopoulos, N., Taylor, P.: An extensible web interface for databases and its application to storing biochemical data. In: WLPE 2010, Edinburgh, Scotland (July 2010)

    Google Scholar 

  4. Cabeza, D., Hermenegildo, M.: Distributed WWW programming using Ciao Prolog and the PiLLoW library. Theory and Practice of Logic Programming 1(3), 251–282 (2001)

    Article  Google Scholar 

  5. Costa, J., Rocha, R.: Global Storing Mechanisms for Tabled Evaluation. In: Garcia de la Banda, M., Pontelli, E. (eds.) ICLP 2008. LNCS, vol. 5366, pp. 708–712. Springer, Heidelberg (2008)

    Chapter  Google Scholar 

  6. Costa, V.S., Rocha, R., Damas, L.: The YAP Prolog system. Journal of Theory and Practice of Logic Programming 12, 5–34 (2012)

    Article  MathSciNet  MATH  Google Scholar 

  7. Draxler, C.: Accessing Relational and Higher Databases Through Database Set Predicates. PhD thesis, Zurich University (1991)

    Google Scholar 

  8. Gray, P.M.D., Lucas, R.J. (eds.): Prolog and Databases, Implementations and New Directions. Ellis Horwood Ltd., Chichester (1988)

    Google Scholar 

  9. Gray, P.M.D., Kemp, G.J.L., Rawlings, C.J., Brown, N.P., Sander, C., Thornton, J.M., Orengo, C.M., Wodak, S.J., Richelle, J.: Macromolecular structure information and databases. Trends in Biochemical Sciences 21, 251–256 (1996)

    Article  Google Scholar 

  10. Kemp, G.J.L., Iriarte, J.J., Gray, P.M.D.: Efficient Access to FDM Objects Stored in a Relational Database. In: Bowers, D.S. (ed.) BNCOD 1994. LNCS, vol. 826, pp. 170–186. Springer, Heidelberg (1994)

    Chapter  Google Scholar 

  11. Keshava Prasad, T.S., Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S.: Human protein reference database 2009 update. Nucleic Acids Research 37(suppl. 1), D767–D772 (2009)

    Google Scholar 

  12. Lucas, R., Keylink Computers Ltd: ProDBI: ODBC Interface for Quintus Prolog. Keylink Computers Ltd., Kenilworth (1997)

    Google Scholar 

  13. Mungall, C.: Experiences using logic programming in bioinformatics. In: Hill, P.M., Warren, D.S. (eds.) ICLP 2009. LNCS, vol. 5649, pp. 1–21. Springer, Heidelberg (2009)

    Chapter  Google Scholar 

  14. Szklarczyk, D., Franceschini, A., Kuhn, M., Simonovic, M., Roth, A., Minguez, P., Doerks, T.: The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Research 39(suppl. 1), D561–D568 (2011)

    Google Scholar 

  15. The UniProt Consortium. Reorganizing the protein space at the universal protein resource (uniprot). Nucleic Acids Res. 40, D71–D75 (2012)

    Google Scholar 

  16. Wielemaker, J., Costa, V.S.: On the portability of prolog applications. In: Rocha, R., Launchbury, J. (eds.) PADL 2011. LNCS, vol. 6539, pp. 69–83. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  17. Wielemaker, J., Huang, Z., van der Meij, L.: SWI-Prolog and the Web. Theory and Practice of Logic Programming 8(3), 363–392 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  18. Wielemaker, J., Schrijvers, T., Triska, M., Lager, T.: SWI-Prolog. Theory and Practice of Logic Programming 12(1-2), 67–96 (2012)

    Article  MathSciNet  MATH  Google Scholar 

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Canisius, S., Angelopoulos, N., Wessels, L. (2013). proSQLite: Prolog File Based Databases via an SQLite Interface. In: Sagonas, K. (eds) Practical Aspects of Declarative Languages. PADL 2013. Lecture Notes in Computer Science, vol 7752. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-45284-0_15

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  • DOI: https://doi.org/10.1007/978-3-642-45284-0_15

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-45283-3

  • Online ISBN: 978-3-642-45284-0

  • eBook Packages: Computer ScienceComputer Science (R0)

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