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Nuno A. Fonseca
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- affiliation: University of Porto, Portugal
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2020 – today
- 2021
- [c27]Cindy Sarmento
, Sílvia Guimarães, Gülsah Merve Kilinç, Anders Götherström, Ana Elisabete Pires, Catarina Ginja, Nuno A. Fonseca
A Study on Burrows-Wheeler Aligner's Performance Optimization for Ancient DNA Mapping. PACBB 2021: 105-114 - 2020
- [j19]Irene Papatheodorou
Expression Atlas update: from tissues to single cells. Nucleic Acids Res. 48(Database-Issue): D77-D83 (2020) - [j18]Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020) - [j17]Claudia Calabrese
Genomic basis for RNA alterations in cancer. Nat. 578(7793): 129-136 (2020)
2010 – 2019
- 2019
- [j16]Awais Athar
ArrayExpress update - from bulk to single-cell expression data. Nucleic Acids Res. 47(Database-Issue): D711-D715 (2019) - 2018
- [j15]Marcela K. Tello-Ruiz, Sushma Naithani
Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Res. 46(Database-Issue): D1181-D1189 (2018) - [j14]Irene Papatheodorou
Expression Atlas: gene and protein expression across multiple studies and organisms. Nucleic Acids Res. 46(Database-Issue): D246-D251 (2018) - 2017
- [j13]Robert Petryszak
The RNASeq-er API - a gateway to systematically updated analysis of public RNA-seq data. Bioinform. 33(14): 2218-2220 (2017) - [c26]Bruno Cavadas
QmihR: Pipeline for Quantification of Microbiome in Human RNA-seq. PACBB 2017: 173-179 - 2016
- [j12]Robert Petryszak, Maria Keays
Expression Atlas update - an integrated database of gene and protein expression in humans, animals and plants. Nucleic Acids Res. 44(Database-Issue): 746-752 (2016) - [j11]Marcela K. Tello-Ruiz, Joshua C. Stein
Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Res. 44(Database-Issue): 1133-1140 (2016) - [p1]Rui Camacho
Parallel Algorithms for Multirelational Data Mining: Application to Life Science Problems. Resource Management for Big Data Platforms 2016: 339-363 - 2015
- [j10]Pedro Ferreira
Predicting malignancy from mammography findings and image-guided core biopsies. Int. J. Data Min. Bioinform. 11(3): 257-276 (2015) - 2014
- [j9]Robert Petryszak
Expression Atlas update - a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. Nucleic Acids Res. 42(Database-Issue): 926-932 (2014) - 2013
- [j8]Tiago Loureiro, Rui Camacho
Improving the performance of Transposable Elements detection tools. J. Integr. Bioinform. 10(3) (2013) - [c25]Rui Camacho
AND Parallelism for ILP: The APIS System. ILP 2013: 93-106 - [c24]Tiago Loureiro, Rui Camacho
Boosting the Detection of Transposable Elements Using Machine Learning. PACBB 2013: 85-91 - 2012
- [j7]Nuno A. Fonseca
Tools for mapping high-throughput sequencing data. Bioinform. 28(24): 3169-3177 (2012) - [j6]Rui Camacho
Predicting the secondary structure of proteins using machine learning algorithms. Int. J. Data Min. Bioinform. 6(6): 571-584 (2012) - [j5]David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola
ADOPS - Automatic Detection Of Positively Selected Sites. J. Integr. Bioinform. 9(3) (2012) - [c23]David Reboiro-Jato, Miguel Reboiro-Jato
On the Development of a Pipeline for the Automatic Detection of Positively Selected Sites. PACBB 2012: 225-229 - 2011
- [j4]Rui Camacho
A Relational Learning Approach to Structure-Activity Relationships in Drug Design Toxicity Studies. J. Integr. Bioinform. 8(3) (2011) - [c22]Pedro Ferreira
Predicting Malignancy from Mammography Findings and Surgical Biopsies. BIBM 2011: 339-344 - [c21]Pedro Ferreira, Inês de Castro Dutra, Nuno A. Fonseca, Ryan W. Woods, Elizabeth S. Burnside:
Studying the Relevance of Breast Imaging Features. HEALTHINF 2011: 337-342 - [c20]Nuno A. Fonseca
Conceptual Clustering of Multi-Relational Data. ILP 2011: 145-159 - [c19]Rui Camacho
Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity Relationships Toxicity Studies in Drug Design. PACBB 2011: 355-363 - 2010
- [c18]Nuno A. Fonseca
Interactive Discriminative Mining of Chemical Fragments. ILP 2010: 59-66 - [c17]Rui Camacho
Predicting the Start of Protein alpha-Helices Using Machine Learning Algorithms. IWPACBB 2010: 33-41
2000 – 2009
- 2009
- [j3]Nuno A. Fonseca
Parallel ILP for distributed-memory architectures. Mach. Learn. 74(3): 257-279 (2009) - [j2]Nuno A. Fonseca
Improving the efficiency of inductive logic programming systems. Softw. Pract. Exp. 39(2): 189-219 (2009) - [c16]Nuno A. Fonseca
Partitional Clustering of Protein Sequences - An Inductive Logic Programming Approach. IWANN (2) 2009: 1001-1004 - [c15]Max Pereira, Vítor Santos Costa
Visually Guiding and Controlling the Search While Mining Chemical Structures. IWANN (2) 2009: 1043-1046 - [c14]Max Pereira, Vítor Santos Costa
Comparative Study of Classification Algorithms Using Molecular Descriptors in Toxicological DataBases. BSB 2009: 121-132 - 2008
- [j1]Nuno A. Fonseca, Rui Camacho, Ricardo Rocha, Vítor Santos Costa:
Compile the Hypothesis Space: Do it Once, Use it Often. Fundam. Informaticae 89(1): 45-67 (2008) - [c13]Vítor Santos Costa
LogCHEM: Interactive Discriminative Mining of Chemical Structure. BIBM 2008: 421-426 - [c12]Pedro Pereira Rodrigues, Fernando M. A. Silva
BIORED - A Genetic Algorithm for Pattern Detection in Biosequences. IWPACBB 2008: 156-165 - [c11]Nuno A. Fonseca
k-RNN: k-relational nearest neighbour algorithm. SAC 2008: 944-948 - 2007
- [c10]Rui Camacho
ILP : - Just Trie It. ILP 2007: 78-87 - 2006
- [c9]Michel Ferreira, Nuno A. Fonseca
Efficient and Scalable Induction of Logic Programs Using a Deductive Database System. ILP 2006: 184-198 - [c8]Nuno A. Fonseca
April - An Inductive Logic Programming System. JELIA 2006: 481-484 - 2005
- [c7]Nuno A. Fonseca
A pipelined data-parallel algorithm for ILP. CLUSTER 2005: 1-10 - [c6]Ricardo Rocha
On Applying Tabling to Inductive Logic Programming. ECML 2005: 707-714 - [c5]Nuno A. Fonseca
Strategies to Parallelize ILP Systems. ILP 2005: 136-153 - 2004
- [c4]Nuno A. Fonseca
On Avoiding Redundancy in Inductive Logic Programming. ILP 2004: 132-146 - 2003
- [c3]Nuno A. Fonseca
Experimental Evaluation of a Caching Technique for ILP. EPIA 2003: 151-155 - [c2]Nuno A. Fonseca
Efficient Data Structures for Inductive Logic Programming. ILP 2003: 130-145
1990 – 1999
- 1998
- [c1]Nuno A. Fonseca, Vítor Santos Costa, Inês de Castro Dutra:
VisAll: A Universal Tool to Visualise Parallel Execution of Logic Programs. IJCSLP 1998: 100-114
Coauthor Index
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